HHsearch alignment for GI: 254780474 and conserved domain: pfam06481
>pfam06481 COX_ARM COX Aromatic Rich Motif. COX2 (Cytochrome O ubiquinol OXidase 2) is a major component of the respiratory complex during vegetative growth. It transfers electrons from a quinol to the binuclear centre of the catalytic subunit 1. The function of this region is not known.
Probab=98.97 E-value=2e-10 Score=94.02 Aligned_cols=47 Identities=43% Similarity=0.699 Sum_probs=44.6
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCC
Q ss_conf 60724569899999761021263217204783542687315244488
Q gi|254780474|r 253 KRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGK 299 (332)
Q Consensus 253 ka~~~~l~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~~~~~~~~ 299 (332)
T Consensus 1 kas~~~L~~~~Y~~La~PSe~~pV~yfssv~~~Lf~~Iv~~~~~~~~ 47 (47)
T pfam06481 1 KASPKTLDRATYLALAKPSENNPVEYFSSVDPGLFDDIVNKYMGGGK 47 (47)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf 98867489999999857764567335525883189999999864899