HHsearch alignment of GI: 254780474 and MMDB domain: 1cyx_A_
>1cyx_A (A:) CYOA; electron transport; 2.30A {Escherichia coli}
Probab=100.00 E-value=0 Score=414.41 Aligned_cols=201 Identities=38% Similarity=0.717 Sum_probs=190.5
Q ss_pred HHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCC
Q ss_conf 77513444200001244678888866899999843699996267877430689636982899998358101102201074
Q gi|254780474|r 117 THRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAG 196 (332)
Q Consensus 117 ~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~ 196 (332)
|+.|+|++|+ ..++++++|+|+|+||+|.|+||++++.++|+|+||+|+||+|+|||.|||||||||+|++
T Consensus 1 T~a~~~~~~~---------~~~~~~l~I~v~g~qW~W~f~Yp~~~~~~~n~l~iP~~~~V~~~ltS~DViHsF~iP~l~~ 71 (205)
T 1cyx_A 1 THALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGS 71 (205)
T ss_dssp -----------------------CCEEEEEEEETTEEEEEETTTTEEEESEEEEETTSCEEEEEEESSSCEEEEEGGGTE
T ss_pred CCCCCCCCCC---------CCCCCCEEEEEEEEECEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9778989988---------8899988999999944089880899964011388506976899997687411243432210
Q ss_pred EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCC
Q ss_conf 031169851489999427748966613326576113658999708-899999999986072456-989999976102126
Q gi|254780474|r 197 QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERD 274 (332)
Q Consensus 197 k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~ 274 (332)
|+|+||||.|++||+++++|+|+|+|+||||.|||.|+|+|+|++ +++|++|++++|+.+..+ +.++|+.++.|++.+
T Consensus 72 k~daiPG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs~M~~~v~vv~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (205)
T 1cyx_A 72 QIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYN 151 (205)
T ss_dssp EEEECTTCCEEEEECCSSSEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCSCCBCSHHHHHHHHSCCSSC
T ss_pred EECCCCCCCEEEEECCCCCCCEEEEEHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
T ss_conf 01006996047764047764306862112060223583699998999999999999763832354256899987776647
Q ss_pred CCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHHH
Q ss_conf 3217204783542687315244488566021024666885234401100112
Q gi|254780474|r 275 SVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIY 326 (332)
Q Consensus 275 ~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~~ 326 (332)
+.+|++++.|+||+.+++++++.|+.+.+..+..++.++.+|+++|+...+.
T Consensus 152 ~~~~~~~~~p~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~ 203 (205)
T 1cyx_A 152 QVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAES 203 (205)
T ss_dssp CCEEESCBCTTHHHHHHTTTC-------------------------------
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6126613581357789998753486655777412444468998736333334