Query         gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 332
No_of_seqs    221 out of 1420
Neff          5.6 
Searched_HMMs 33803
Date          Wed Jun  1 13:23:20 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780474.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1cyx_A CYOA; electron transpo 100.0       0       0  414.4  17.5  201  117-326     1-203 (205)
  2 >1fft_B Ubiquinol oxidase; ele 100.0       0       0  410.9  10.6  192  135-326     2-195 (197)
  3 >3hb3_B Cytochrome C oxidase s 100.0 2.6E-43       0  327.3  14.8  127  138-264     1-151 (162)
  4 >2gsm_B Cytochrome C oxidase s 100.0 2.9E-42       0  319.8  14.9  120  138-257     3-160 (160)
  5 >1v54_B Cytochrome C oxidase p 100.0 4.6E-42       0  318.4  13.5  113  140-252     2-135 (136)
  6 >1xme_B Cytochrome C oxidase p 100.0 6.3E-34 1.9E-38  260.5   3.9   95  147-241     4-114 (114)
  7 >2cua_A Protein (CUA); CUA cen 100.0 9.8E-33 2.9E-37  252.1   1.3  105  137-241    15-135 (135)
  8 >1qni_A Nitrous-oxide reductas  99.9 2.9E-27 8.4E-32  213.2  11.3   98  144-241    27-128 (129)
  9 >1iby_A Nitrosocyanin; RED cop  99.9 1.6E-26 4.8E-31  207.9  10.2   98  140-238    12-111 (112)
 10 >1fwx_A Nitrous oxide reductas  99.9   5E-21 1.5E-25  168.8  11.0   98  137-244    69-170 (170)
 11 >3hb3_B Cytochrome C oxidase s  99.4 1.5E-12 4.5E-17  108.5   8.6   86   34-121    48-133 (136)
 12 >1paz_A Pseudoazurin precursor  98.6 2.6E-07 7.6E-12   71.4   9.6  101  141-252     2-105 (123)
 13 >1pmy_A Pseudoazurin; electron  98.5 5.9E-07 1.7E-11   68.8   8.4  105  141-256     2-109 (123)
 14 >3erx_A Pseudoazurin; copper p  98.4 2.5E-06 7.4E-11   64.4   9.4  103  142-255     3-108 (123)
 15 >3ef4_A Pseudoazurin, blue cop  98.2 4.4E-06 1.3E-10   62.7   6.6   85  165-254    21-108 (124)
 16 >1id2_A Amicyanin; beta barrel  97.7 0.00024   7E-09   50.3   8.3   88  138-240    16-106 (106)
 17 >1bxv_A Plastocyanin; copper p  97.2   0.002   6E-08   43.7   7.6   71  165-240    18-91  (91)
 18 >2ov0_A Amicyanin; beta-sandwi  97.1  0.0037 1.1E-07   41.8   8.5   87  137-240    14-105 (105)
 19 >1iuz_A Plastocyanin; electron  96.6   0.012 3.5E-07   38.2   7.7   73  165-240    17-98  (98)
 20 >3fsa_A Azurin; copper, cupred  96.4  0.0055 1.6E-07   40.6   4.7   72  164-240    16-125 (125)
 21 >2ux6_A Pseudoazurin; type-1 c  96.2   0.091 2.7E-06   31.9  10.2   89  142-243     3-94  (122)
 22 >1b3i_A PETE protein, protein   95.9   0.073 2.2E-06   32.6   8.6   86  142-240     3-97  (97)
 23 >2aan_A Auracyanin A; cupredox  95.9   0.037 1.1E-06   34.8   7.0   74  164-239    33-138 (139)
 24 >2dv6_A Nitrite reductase; ele  95.8    0.07 2.1E-06   32.8   8.1  101  142-243    29-134 (146)
 25 >3c75_A Amicyanin; copper prot  95.6   0.066   2E-06   32.9   7.3   69  165-240    59-132 (132)
 26 >1cuo_A Protein (azurin ISO-2)  95.5   0.079 2.3E-06   32.4   7.6   75  164-241    16-129 (129)
 27 >1qhq_A Protein (auracyanin);   94.8     0.2 6.1E-06   29.4   7.9   76  164-240    31-139 (140)
 28 >1kdj_A Plastocyanin; electron  94.8   0.093 2.7E-06   31.9   6.1   73  165-240    16-102 (102)
 29 >1byp_A Protein (plastocyanin)  94.7    0.18 5.3E-06   29.9   7.4   73  164-239    15-98  (99)
 30 >1plc_A Plastocyanin; electron  94.7    0.21 6.3E-06   29.3   7.7   70  165-239    16-98  (99)
 31 >1sdd_B Coagulation factor V;   93.4    0.38 1.1E-05   27.6   7.0   81  162-243    48-142 (149)
 32 >2j5w_A Ceruloplasmin, ferroxi  92.1    0.38 1.1E-05   27.6   5.5   79  164-243    57-146 (151)
 33 >2plt_A Plastocyanin; electron  91.9    0.62 1.8E-05   26.0   6.5   70  165-239    17-97  (98)
 34 >2gim_A Plastocyanin; beta she  91.7    0.76 2.2E-05   25.4   6.7   74  164-240    18-105 (106)
 35 >1mzy_A Copper-containing nitr  91.5    0.66   2E-05   25.8   6.2   79  164-242    64-160 (174)
 36 >1mzy_A Copper-containing nitr  91.3       1   3E-05   24.5   7.0   81  164-244    62-155 (159)
 37 >3cvb_A Plastocyanin; cupredox  90.4    0.75 2.2E-05   25.4   5.6   73  165-240    18-104 (105)
 38 >1zpu_A Iron transport multico  85.2     2.6 7.8E-05   21.6   7.4   78  165-243    72-186 (193)
 39 >1pcs_A Plastocyanin; electron  85.1     2.7 7.9E-05   21.5   7.8   71  164-239    17-97  (98)
 40 >1oe1_A Dissimilatory copper-c  83.8       3 8.9E-05   21.1   6.9   80  165-244    64-155 (159)
 41 >3g5w_A Multicopper oxidase ty  83.6     3.1   9E-05   21.1   7.1   75  166-241    48-140 (160)
 42 >2zwn_A Two-domain type laccas  81.8     3.6 0.00011   20.6   5.8   74  165-239    47-138 (159)
 43 >1kbv_A ANIA, major outer memb  80.0     4.1 0.00012   20.2   6.1   81  163-243    67-158 (160)
 44 >2ccw_A Azurin II, AZN-2; elec  79.8     4.1 0.00012   20.2   5.1   74  164-240    17-128 (129)
 45 >2j5w_A Ceruloplasmin, ferroxi  78.8     4.4 0.00013   20.0   5.3   79  165-244    63-155 (159)
 46 >1sdd_A Coagulation factor V;   77.8    0.37 1.1E-05   27.6  -0.8   79  165-244    34-123 (126)
 47 >1hfu_A Laccase 1; oxidoreduct  76.3     5.1 0.00015   19.5   6.4   65  165-229    48-131 (169)
 48 >1nwp_A Azurin; electron trans  75.1     5.5 0.00016   19.3   8.1   73  164-239    17-127 (128)
 49 >2r7e_A Coagulation factor VII  74.7     1.8 5.2E-05   22.8   2.0   78  165-243    61-149 (178)
 50 >2r7e_A Coagulation factor VII  74.1     5.3 0.00016   19.4   4.4   77  166-243    56-143 (166)
 51 >2zoo_A Probable nitrite reduc  68.5     7.7 0.00023   18.3   7.2   80  164-243    58-148 (149)
 52 >1oe1_A Dissimilatory copper-c  68.4     7.7 0.00023   18.2   7.0   81  163-243    63-161 (177)
 53 >1gsk_A COTA, spore coat prote  67.3     8.1 0.00024   18.1   9.9   80  164-244    42-160 (160)
 54 >2cal_A Rusticyanin; iron resp  65.2     8.8 0.00026   17.8   8.7   73  166-239    61-153 (154)
 55 >2r7e_B Coagulation factor VII  64.8       3 8.9E-05   21.1   1.5   67  165-231    63-143 (154)
 56 >1jer_A Cucumber stellacyanin;  64.2       8 0.00024   18.1   3.5   90  164-256    26-123 (138)
 57 >1kbv_A ANIA, major outer memb  62.4     9.9 0.00029   17.5   6.2   78  164-241    52-147 (167)
 58 >2iaa_C Azurin; quinoprotein,   58.5      11 0.00034   17.0   7.6   73  165-240    17-127 (128)
 59 >2uxt_A Protein SUFI, SUFI; pe  58.4      11 0.00032   17.2   3.4   79  165-244    34-132 (139)
 60 >2j5w_A Ceruloplasmin, ferroxi  58.0      12 0.00035   17.0   5.2   76  164-240    72-158 (165)
 61 >2bw4_A Copper-containing nitr  55.2      13 0.00038   16.6  12.1   80  164-243    69-160 (165)
 62 >2dv6_A Nitrite reductase; ele  53.5      14 0.00041   16.5  12.3   83  161-243    44-137 (139)
 63 >1aoz_A Ascorbate oxidase; oxi  53.2      14 0.00041   16.4   4.7   64  166-229    76-159 (182)
 64 >2oa4_A SIR5; structure, struc  49.9      16 0.00046   16.1   3.8   35  239-273    61-96  (101)
 65 >2zoo_A Probable nitrite reduc  49.7      16 0.00046   16.1   6.8   77  165-241    54-148 (167)
 66 >2uxt_A Protein SUFI, SUFI; pe  49.5      16 0.00046   16.0   6.3   69  167-235    48-136 (167)
 67 >2jrt_A Uncharacterized protei  48.9      14 0.00041   16.4   2.7   34  239-272    60-94  (95)
 68 >1npb_A Fosfomycin-resistance   47.6      17  0.0005   15.8   3.7   31  229-259     2-32  (58)
 69 >1aoz_A Ascorbate oxidase; oxi  45.2      18 0.00054   15.6   3.3   50  193-243   168-217 (242)
 70 >2c1i_A Peptidoglycan glcnac d  44.8     7.6 0.00023   18.3   0.8   22  152-173    13-42  (48)
 71 >2rbb_A Glyoxalase/bleomycin r  41.5      21 0.00061   15.2   3.6   35  225-259     1-35  (73)
 72 >2bze_A KIAA0252 protein; huma  39.4      22 0.00066   15.0   5.5   78  175-261    55-137 (153)
 73 >1pgs_A Peptide-N(4)-(N-acetyl  39.3      19 0.00056   15.5   2.1   33  201-233    38-78  (177)
 74 >3cg8_A Laccase; oxidoreductas  39.1      22 0.00066   14.9   2.6   78  165-243    24-124 (159)
 75 >2q9o_A Laccase-1; multicopper  35.9      25 0.00074   14.6   6.1   60  166-225    55-133 (175)
 76 >3d7a_A UPF0201 protein PH1010  33.3     8.8 0.00026   17.8  -0.4  107  153-259    11-137 (138)
 77 >2auw_A Hypothetical protein N  30.6      26 0.00076   14.5   1.6   14  240-253     1-14  (81)
 78 >1poi_A Glutaconate coenzyme A  29.8      30 0.00087   14.1   1.9   14  238-251    23-36  (40)
 79 >2knc_A Integrin alpha-IIB; tr  28.0      33 0.00098   13.7   5.6   23   52-74     13-35  (54)
 80 >3c2u_A Xylosidase/arabinosida  27.6      28 0.00083   14.2   1.4   83  147-235    17-101 (214)
 81 >1waz_A MERF; protein structur  27.6      34   0.001   13.7   2.8   15   65-79     32-46  (46)
 82 >1zpu_A Iron transport multico  27.3      34   0.001   13.6   4.3   58  166-223    50-125 (169)
 83 >2jhp_A VP4 core protein; guan  26.6      32 0.00094   13.9   1.5   30   65-94    144-174 (187)
 84 >2qt6_A Laccase; beta barrel,   26.4      35   0.001   13.5   6.3   74  165-238    49-142 (166)
 85 >2cb8_A Acyl-COA-binding prote  26.2      36  0.0011   13.5   3.9   49  240-291     1-52  (87)
 86 >2fjl_A 1-phosphatidylinositol  25.2      37  0.0011   13.4   3.2   31  227-257    22-52  (54)
 87 >2qt6_A Laccase; beta barrel,   24.2      39  0.0011   13.3   4.1   55  189-244   117-171 (175)
 88 >2jdj_A HAPK, REDY-like protei  24.0      39  0.0012   13.2   1.6   14  240-253    14-27  (105)
 89 >2kjz_A ATC0852; protein of un  23.1      41  0.0012   13.1   4.0   31  230-260     4-34  (63)
 90 >2phl_A Phaseolin; plant SEED   21.7      43  0.0013   12.9   2.3   39  166-204   103-141 (202)
 91 >2q9o_A Laccase-1; multicopper  21.7      43  0.0013   12.9   3.9   49  194-243   140-188 (190)
 92 >2j5l_A Apical membrane antige  21.2      23 0.00069   14.8   0.0   23  168-190   311-335 (581)
 93 >1kv7_A CUEO, probable blue-co  21.1      44  0.0013   12.8   3.6   63  164-226    83-169 (181)
 94 >3bqx_A Glyoxalase-related enz  21.0      45  0.0013   12.8   2.3   29  231-259     3-31  (61)
 95 >1ws8_A Mavicyanin; oxidized f  20.7      45  0.0013   12.8   5.0   34  207-243    71-106 (109)
 96 >2bh9_A G6PD, glucose-6-phosph  20.4      46  0.0014   12.7   5.0   62  258-319    86-154 (178)

No 1  
>>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} (A:)
Probab=100.00  E-value=0  Score=414.41  Aligned_cols=201  Identities=38%  Similarity=0.717  Sum_probs=190.5

Q ss_pred             HHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCC
Q ss_conf             77513444200001244678888866899999843699996267877430689636982899998358101102201074
Q gi|254780474|r  117 THRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAG  196 (332)
Q Consensus       117 ~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~  196 (332)
                      |+.|+|++|+         ..++++++|+|+|+||+|.|+||++++.++|+|+||+|+||+|+|||.|||||||||+|++
T Consensus         1 T~a~~~~~~~---------~~~~~~l~I~v~g~qW~W~f~Yp~~~~~~~n~l~iP~~~~V~~~ltS~DViHsF~iP~l~~   71 (205)
T 1cyx_A            1 THALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGS   71 (205)
T ss_dssp             -----------------------CCEEEEEEEETTEEEEEETTTTEEEESEEEEETTSCEEEEEEESSSCEEEEEGGGTE
T ss_pred             CCCCCCCCCC---------CCCCCCEEEEEEEEECEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             9778989988---------8899988999999944089880899964011388506976899997687411243432210


Q ss_pred             EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCC
Q ss_conf             031169851489999427748966613326576113658999708-899999999986072456-989999976102126
Q gi|254780474|r  197 QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERD  274 (332)
Q Consensus       197 k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~  274 (332)
                      |+|+||||.|++||+++++|+|+|+|+||||.|||.|+|+|+|++ +++|++|++++|+.+..+ +.++|+.++.|++.+
T Consensus        72 k~daiPG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs~M~~~v~vv~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (205)
T 1cyx_A           72 QIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYN  151 (205)
T ss_dssp             EEEECTTCCEEEEECCSSSEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCSCCBCSHHHHHHHHSCCSSC
T ss_pred             EECCCCCCCEEEEECCCCCCCEEEEEHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
T ss_conf             01006996047764047764306862112060223583699998999999999999763832354256899987776647


Q ss_pred             CCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHHH
Q ss_conf             3217204783542687315244488566021024666885234401100112
Q gi|254780474|r  275 SVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIY  326 (332)
Q Consensus       275 ~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~~  326 (332)
                      +.+|++++.|+||+.+++++++.|+.+.+..+..++.++.+|+++|+...+.
T Consensus       152 ~~~~~~~~~p~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~  203 (205)
T 1cyx_A          152 QVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAES  203 (205)
T ss_dssp             CCEEESCBCTTHHHHHHTTTC-------------------------------
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             6126613581357789998753486655777412444468998736333334


No 2  
>>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} (B:119-315)
Probab=100.00  E-value=0  Score=410.95  Aligned_cols=192  Identities=40%  Similarity=0.741  Sum_probs=183.8

Q ss_pred             CCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECC
Q ss_conf             78888866899999843699996267877430689636982899998358101102201074031169851489999427
Q gi|254780474|r  135 IAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNK  214 (332)
Q Consensus       135 ~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~  214 (332)
                      .++++++++|+|+|+||+|+|+||+++++++|+|+||+|+||+|+|||+|||||||||+|++|+|+||||+|++|+++++
T Consensus         2 ~~~~~~~l~V~V~g~qW~W~f~Yp~~~~~t~n~l~iP~~~~v~~~ltS~DViHsF~vP~l~~k~daiPG~~~~~~~~~~~   81 (197)
T 1fft_B            2 LAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANE   81 (197)
T ss_dssp             CCCCSCCCEEEEECCTTSCEEECTTTCCEEESBCCCCSSSEEEEEECBSSSCEEEEEGGGTEEEEECBTSCEEEEEECCS
T ss_pred             CCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEEECCCHHHEEEEHHHCCEEECCCCEEEEEEEECCC
T ss_conf             77899986999999875689964888853023387304761699996597023042231086245169815899998289


Q ss_pred             CEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHC
Q ss_conf             748966613326576113658999708-899999999986072456-989999976102126321720478354268731
Q gi|254780474|r  215 KGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILN  292 (332)
Q Consensus       215 ~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~  292 (332)
                      +|+|+|+|+||||.|||.|+|+|+|+| +++|++|++++|+++..+ +.+.|+.++.|+..+++++++++.|+||+.+++
T Consensus        82 ~G~y~g~CaE~CG~~Hs~M~~~v~vvs~~~~f~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~~~~  161 (197)
T 1fft_B           82 PGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVIN  161 (197)
T ss_dssp             CBCCEEBCCSCCSTTTTTCCEECCBCSSTHHHHHHHHHHHHCSCCBCCHHHHHHHTSSCSSCCSEEESCBCTTHHHHHHH
T ss_pred             CEEEEEEEHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHH
T ss_conf             88999981100370603342479998588999999998660886666799999986776568843012679733899999


Q ss_pred             CCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHHH
Q ss_conf             5244488566021024666885234401100112
Q gi|254780474|r  293 LCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIY  326 (332)
Q Consensus       293 ~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~~  326 (332)
                      ++++.|..+.+..+..+..++.+|+++|+...+.
T Consensus       162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~  195 (197)
T 1fft_B          162 KFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAES  195 (197)
T ss_dssp             HTTC------------------------------
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9714887778876321113579999878774322


No 3  
>>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* (B:137-298)
Probab=100.00  E-value=2.6e-43  Score=327.32  Aligned_cols=127  Identities=23%  Similarity=0.432  Sum_probs=117.3

Q ss_pred             CCCCEEEEEEEEEEEEEEEECCC------------------------CCCCCEEEEEECCCEEEEEEEECCCCHHCCCHH
Q ss_conf             88866899999843699996267------------------------877430689636982899998358101102201
Q gi|254780474|r  138 NSKPLVVEVVALDWKWLFLLPEQ------------------------QVAIINELVVPIDRPLEFRITASSVMNSFYIPG  193 (332)
Q Consensus       138 ~~~~l~I~V~a~qW~W~F~YP~~------------------------giatvneL~lPv~~pV~f~ltS~DViHSF~IP~  193 (332)
                      ++++++|+|+|+||+|.|+||+.                        ...+.|+|+||+|+||+|++||.|||||||||+
T Consensus         1 ~~p~l~V~v~g~QW~W~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~lvlP~~~~v~~~ltS~DViHsf~vP~   80 (162)
T 3hb3_B            1 NDPDLVIKAIGHQWYWSYEYPNDGVAFDALMLEKEALADAGYSEDEYLLATDNPVVVPVGKKVLVQVTATDVIHAWTIPA   80 (162)
T ss_dssp             SSCSEEEEEEEETTEEEEEETTTTEEEEECBCCGGGHHHHTCCGGGTTTCBSSCEEEESSSEEEEEEEESSSCEEEEEGG
T ss_pred             CCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCHHHHHCCC
T ss_conf             99877999874142146765402245531135402202457667644446576499851546899998074012321141


Q ss_pred             HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             07403116985148999942774896661332657611365899970889999999998607245698999
Q gi|254780474|r  194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEY  264 (332)
Q Consensus       194 l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l~~~~y  264 (332)
                      ||+|+||||||.|++||+++++|+|+|+|+||||.|||.|+|+|+|+++++|++|++++|+.......+..
T Consensus        81 l~~K~DaiPG~~~~~~~~~~~~G~y~g~CaElCG~~Hs~M~~~v~vvs~~~f~~Wi~~~~~~~~~~~~~~~  151 (162)
T 3hb3_B           81 FAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWLAGAKEEFAADASDYL  151 (162)
T ss_dssp             GTEEEEECTTCCEEEEEECSSSEEEEECCCSCCSTTTTSCCEEEEEECHHHHHHHHHHHHHHTBC------
T ss_pred             CCCEEECCCCCCEEEEEEECCCEEEEEECHHHHCHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             15243336886258999958977899988776086366991699997899999999986765143740003


No 4  
>>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} (B:103-262)
Probab=100.00  E-value=2.9e-42  Score=319.80  Aligned_cols=120  Identities=19%  Similarity=0.427  Sum_probs=113.0

Q ss_pred             CCCCEEEEEEEEEEEEEEEECCC--------------------------------------CCCCCEEEEEECCCEEEEE
Q ss_conf             88866899999843699996267--------------------------------------8774306896369828999
Q gi|254780474|r  138 NSKPLVVEVVALDWKWLFLLPEQ--------------------------------------QVAIINELVVPIDRPLEFR  179 (332)
Q Consensus       138 ~~~~l~I~V~a~qW~W~F~YP~~--------------------------------------giatvneL~lPv~~pV~f~  179 (332)
                      .+++++|+|+|+||+|.|+||+.                                      .+.+.|+|+||+|+||+|+
T Consensus         3 ~~p~~tV~v~G~QW~W~f~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lP~~~~v~~~   82 (160)
T 2gsm_B            3 PEADVTVKVTGYQWYWGYEYPDEEISFESYMIGSPATGGDNRMSPEVEQQLIEAGYSRDEFLLATDTAMVVPVNKTVVVQ   82 (160)
T ss_dssp             CCCSEEEEEEEETTEEEEEETTTTEEEEECBTTSGGGTCCSSCCHHHHHHHHHTTCCGGGTTTCBSSCEEEETTSEEEEE
T ss_pred             CCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEE
T ss_conf             99976899888761342136644454333024775546543358402544300245565434155771898169878688


Q ss_pred             EEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf             983581011022010740311698514899994277489666133265761136589997088999999999860724
Q gi|254780474|r  180 ITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGT  257 (332)
Q Consensus       180 ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~  257 (332)
                      +||.|||||||||+||+|+||||||.|+++++++++|+|+|+|+||||.|||.|+|+|+|+++++|++|++++|+.++
T Consensus        83 itS~DViHsF~vP~l~~K~DaiPG~~~~~~~~~~~~G~y~g~C~E~CG~~Hs~M~~~V~vv~~~~f~~W~~~~~~~~~  160 (160)
T 2gsm_B           83 VTGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQHHHHHH  160 (160)
T ss_dssp             EEESSSCEEEEEGGGTEEEEECBTCCEEEEEECCSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHHHCCC--
T ss_pred             EECCCCCCCCCCCCCCCEEEEECCEEEEEEEEECCCEEEEEECHHHCCHHHCCCCEEEEEECHHHHHHHHHHHCCCCC
T ss_conf             861741343134535726762088069999994897679998667508636799169999889999999964543479


No 5  
>>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (B:92-227)
Probab=100.00  E-value=4.6e-42  Score=318.42  Aligned_cols=113  Identities=20%  Similarity=0.414  Sum_probs=108.1

Q ss_pred             CCEEEEEEEEEEEEEEEECCCCCC---------------------CCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEE
Q ss_conf             866899999843699996267877---------------------43068963698289999835810110220107403
Q gi|254780474|r  140 KPLVVEVVALDWKWLFLLPEQQVA---------------------IINELVVPIDRPLEFRITASSVMNSFYIPGLAGQI  198 (332)
Q Consensus       140 ~~l~I~V~a~qW~W~F~YP~~gia---------------------tvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~  198 (332)
                      ++++|+|+|+||+|.|+||+.++.                     +.|+|++|+|+||+|.+||+|||||||||+||+|+
T Consensus         2 p~~~I~v~g~Qw~W~f~Yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lP~~~~v~~~itS~DViHSf~vP~l~~K~   81 (136)
T 1v54_B            2 PSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKT   81 (136)
T ss_dssp             CSEEEEEEEETTEEEEEECSSSCEEEEECBCCGGGCCTTCCTTTCBSSCEEEETTSCEEEEEEESSSCEEEEEGGGTEEE
T ss_pred             CCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHCCEEE
T ss_conf             86437862105333346246666645566674300055865311256846984365899999847531014443065554


Q ss_pred             CCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf             116985148999942774896661332657611365899970889999999998
Q gi|254780474|r  199 YAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKV  252 (332)
Q Consensus       199 daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~  252 (332)
                      ||||||.|.+|++++++|+|+|+|+||||.|||.|+|+|+|+++++|++|++++
T Consensus        82 DaiPG~~~~~~~~~~~~G~y~g~C~ElCG~~Hs~M~~~V~vv~~~~f~~W~~~q  135 (136)
T 1v54_B           82 DAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASM  135 (136)
T ss_dssp             EECTTCCEEEEECCSSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHHT
T ss_pred             EHHCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf             410483666999907978999986765073035890799998899999999955


No 6  
>>1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} (B:55-168)
Probab=99.98  E-value=6.3e-34  Score=260.54  Aligned_cols=95  Identities=20%  Similarity=0.278  Sum_probs=88.1

Q ss_pred             EEEEEEEEEEECC----------------CCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEE
Q ss_conf             9984369999626----------------787743068963698289999835810110220107403116985148999
Q gi|254780474|r  147 VALDWKWLFLLPE----------------QQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHA  210 (332)
Q Consensus       147 ~a~qW~W~F~YP~----------------~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~  210 (332)
                      +|+||+|.|.||+                .+..+.|+|++|+|+||+|.+||+|||||||||+||+|+|||||++|++||
T Consensus         4 ig~qw~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~iP~g~~V~~~ltS~DViHsF~ip~~~~k~daiPG~~~~~~f   83 (114)
T 1xme_B            4 VRQEGPWADPAQAVVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEVLPGEVSTVRY   83 (114)
T ss_dssp             TTTSSTTTCGGGSEEECSSSEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEECBTBCEEEEE
T ss_pred             EEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCEEEEEEEECCCCCCEEECCCCCEEEECCCCEEEEEE
T ss_conf             86355023557764457898699999986045678889995899999999918754301011347214552786379999


Q ss_pred             EECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             9427748966613326576113658999708
Q gi|254780474|r  211 VMNKKGAYSGFSANYSGRGFSHMRFKFYGKS  241 (332)
Q Consensus       211 ~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s  241 (332)
                      +|+++|+|+|+|+||||+|||.|+++++|+|
T Consensus        84 ~~~~~G~y~~~C~e~CG~~H~~M~~~v~V~s  114 (114)
T 1xme_B           84 TFKRPGEYRIICNQYCGLGHQNMFGTIVVKE  114 (114)
T ss_dssp             ECCSCEEEEEECCSCCSTTGGGCEEEEEEEC
T ss_pred             EECCCEEEEEECHHHCCCCCCCCEEEEEEEC
T ss_conf             9599889999953543848036806999979


No 7  
>>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} (A:)
Probab=99.97  E-value=9.8e-33  Score=252.10  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=97.9

Q ss_pred             CCCCCEEEEEEEEEEEEEEEECCCCC----------------CCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECC
Q ss_conf             88886689999984369999626787----------------74306896369828999983581011022010740311
Q gi|254780474|r  137 KNSKPLVVEVVALDWKWLFLLPEQQV----------------AIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYA  200 (332)
Q Consensus       137 ~~~~~l~I~V~a~qW~W~F~YP~~gi----------------atvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~da  200 (332)
                      ...+++.|.+++.||+|.|.||+...                -+.|++++|+|+||+|++||.|||||||||+|++|+|+
T Consensus        15 ~~~~~~~v~~~~~qw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~lp~g~~V~~~ltS~DViHsF~ip~~~ik~d~   94 (135)
T 2cua_A           15 GKLERVDPTTVRQEGPWADPAQAVVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEV   94 (135)
T ss_dssp             CSCCBCCTTTTTTSSTTTCGGGCEEEEETTEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEE
T ss_pred             CCCCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCEEEEECCCEEEEEEEECCCEEECEECCCCCEEEE
T ss_conf             62014580130245887765567583699979999999962217878999689999999992871251355377832545


Q ss_pred             CCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             69851489999427748966613326576113658999708
Q gi|254780474|r  201 MAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS  241 (332)
Q Consensus       201 iPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s  241 (332)
                      |||++|+++|++++||+|+|+|+||||+||+.|+|+++|+|
T Consensus        95 iPG~~~~~~~~~~~pG~y~~~C~e~CG~gH~~M~~~v~v~s  135 (135)
T 2cua_A           95 LPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGTIVVKE  135 (135)
T ss_dssp             CBTBCEEEEEECCSCEEEEEECCSCCSTTSTTCEEEEEEEC
T ss_pred             ECCCEEEEEEECCCCEEEEEECHHHCCCCCCCCEEEEEEEC
T ss_conf             04431679986278879999941413968205807999979


No 8  
>>1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} (A:453-581)
Probab=99.95  E-value=2.9e-27  Score=213.25  Aligned_cols=98  Identities=9%  Similarity=0.039  Sum_probs=86.9

Q ss_pred             EEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEE----CCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEE
Q ss_conf             999998436999962678774306896369828999983----5810110220107403116985148999942774896
Q gi|254780474|r  144 VEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITA----SSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYS  219 (332)
Q Consensus       144 I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS----~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~  219 (332)
                      ..+....+.|.+.++..+..+.|++++|+|+||+|.+||    +|||||||||+||+|+||+||+.|++||+++++|+|.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~pv~~~vt~~~~s~DViHsf~vp~~~~k~daiPG~~~~~~f~~~~~G~y~  106 (129)
T 1qni_A           27 KVIRDGNKVRVYMTSVAPQYGMTDFKVKEGDEVTVYITNLDMVEDVTHGFCMVNHGVSMEISPQQTASVTFTAGKPGVYW  106 (129)
T ss_dssp             CEEEETTEEEEEEEEETTEESCSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEEEEECTTCEEEEEEECCSSEEEE
T ss_pred             CEEECCCEEEEEEEEECCCCCCCEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCCCH
T ss_conf             55978989999999956755787479889999999993577663577614655887866989997168999899995410


Q ss_pred             EECCCCCCCCCCCCEEEEEECC
Q ss_conf             6613326576113658999708
Q gi|254780474|r  220 GFSANYSGRGFSHMRFKFYGKS  241 (332)
Q Consensus       220 G~cae~cG~ghs~M~f~v~v~s  241 (332)
                      |+|+||||.||+.|+++++|++
T Consensus       107 ~~CaE~CG~~H~~M~~~v~VvP  128 (129)
T 1qni_A          107 YYCNWFCHALHMEMVGRMLVEA  128 (129)
T ss_dssp             EECCSCCSTTGGGCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHEEEEEEEC
T ss_conf             6631342688775425699841


No 9  
>>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} (A:)
Probab=99.94  E-value=1.6e-26  Score=207.89  Aligned_cols=98  Identities=12%  Similarity=0.054  Sum_probs=82.1

Q ss_pred             CCEEEEEEEEEEEEE-EEECCCCCCCCEEEEEECCCEEEEEEEEC-CCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEE
Q ss_conf             866899999843699-99626787743068963698289999835-8101102201074031169851489999427748
Q gi|254780474|r  140 KPLVVEVVALDWKWL-FLLPEQQVAIINELVVPIDRPLEFRITAS-SVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGA  217 (332)
Q Consensus       140 ~~l~I~V~a~qW~W~-F~YP~~giatvneL~lPv~~pV~f~ltS~-DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~  217 (332)
                      +...++..+.++.+. ..+ +....+.|+|++|+|+||+|.|||. |||||||||+|++|+||+||+.|+++++++++|+
T Consensus        12 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~l~vp~g~~V~~~lTs~~DViHsF~vp~~~ik~daiPG~~~~~~~~~~~~G~   90 (112)
T 1iby_A           12 DTTIPELNVEGVTVKNIRA-FNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKAGETKTISFTADKAGA   90 (112)
T ss_dssp             EEEEEEEEETTEEEEEEEE-EEEEEESCEEEEETTCEEEEEEEECSSSCEEEEEGGGTEEEEECTTCEEEEEEECCSCEE
T ss_pred             CCCCCCCCCCCCEEEEEEE-EEEEECCCEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCE
T ss_conf             5646532657705663797-663418998998799999999996998717789727565333369953268998145736


Q ss_pred             EEEECCCCCCCCCCCCEEEEE
Q ss_conf             966613326576113658999
Q gi|254780474|r  218 YSGFSANYSGRGFSHMRFKFY  238 (332)
Q Consensus       218 y~G~cae~cG~ghs~M~f~v~  238 (332)
                      |+|+|+||||.||..|.++|+
T Consensus        91 y~g~C~E~CG~~Hm~m~i~VV  111 (112)
T 1iby_A           91 FTIWCQLHPKNIHLPGTLNVV  111 (112)
T ss_dssp             EEEBCSSSCTTTBCCEEEEEE
T ss_pred             EEEECCCCCHHHCCEEEEEEE
T ss_conf             999885167441685899996


No 10 
>>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} (A:45-81,A:463-595)
Probab=99.85  E-value=5e-21  Score=168.83  Aligned_cols=98  Identities=11%  Similarity=0.138  Sum_probs=86.9

Q ss_pred             CCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC----CCHHCCCHHHCCEECCCCCCCEEEEEEE
Q ss_conf             888866899999843699996267877430689636982899998358----1011022010740311698514899994
Q gi|254780474|r  137 KNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS----VMNSFYIPGLAGQIYAMAGMETKLHAVM  212 (332)
Q Consensus       137 ~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D----ViHSF~IP~l~~k~daiPG~~t~l~~~a  212 (332)
                      .+.+...|.+++.+|.|          ..+++++|+|.+|.|.|||.|    |+|+|+||++++|+|++||++++++|+|
T Consensus        69 ~~~~~~~V~~~~~~~~~----------~~~~i~V~~Gd~V~i~ltN~d~~~dv~Hgf~Ip~~~v~~di~PG~~~~~~F~a  138 (170)
T 1fwx_A           69 RDGNKVRVYMSSVAPSF----------SIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVA  138 (170)
T ss_dssp             EETTEEEEEEEEETTEE----------SCSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEEEEECTTCEEEEEEEC
T ss_pred             ECCCEEEEEEEEECCCC----------CCEEEEECCCCEEEEEECCCCHHHHCCCCEEEECCCEEEEECCCCEEEEEEEC
T ss_conf             55856899999504656----------83478874698899998141032201252366235243576688444699973


Q ss_pred             CCCEEEEEECCCCCCCCCCCCEEEEEECCHHH
Q ss_conf             27748966613326576113658999708899
Q gi|254780474|r  213 NKKGAYSGFSANYSGRGFSHMRFKFYGKSEKG  244 (332)
Q Consensus       213 ~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~  244 (332)
                      +++|+|.++|+||||.+|+.|++.++|++++.
T Consensus       139 ~~pG~y~~~C~e~Cg~~H~~M~G~iiV~p~ea  170 (170)
T 1fwx_A          139 ANPGVYWYYCQWFCHALHMEMRGRMLVEPKEA  170 (170)
T ss_dssp             CSCEEEEEECCSCCSTTCTTCEEEEEEECC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCEEEECCCCC
T ss_conf             68862101777888898897624153044779


No 11 
>>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* (B:1-136)
Probab=99.39  E-value=1.5e-12  Score=108.52  Aligned_cols=86  Identities=15%  Similarity=0.223  Sum_probs=78.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH
Q ss_conf             32689898999999999999999999999999999999885304677777787534566125530227899999999999
Q gi|254780474|r   34 IVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVIT  113 (332)
Q Consensus        34 ~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~t  113 (332)
                      ...||.+|+++++..++..+..++.+|++.|..+++|+.++||++++  ..+.+..||+.+|++||++|++|+++|++++
T Consensus        48 ~fqd~~Sp~me~i~~fHd~~m~i~~~I~~~V~~~~~~~~~~~~~~~~--~~~~~~~~n~~lEiiWTiiP~lILi~la~PS  125 (136)
T 3hb3_B           48 NFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRAN--PVPARFTHNTPIEVIWTLVPVLILVAIGAFS  125 (136)
T ss_dssp             SCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTS--SSCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             89898898999999999999999999999999999999999826688--8753235775267899999999999999988


Q ss_pred             HHHHHHHC
Q ss_conf             98877513
Q gi|254780474|r  114 WDATHRMD  121 (332)
Q Consensus       114 ~~~~~~ld  121 (332)
                      .+..+.+|
T Consensus       126 l~lLYlmd  133 (136)
T 3hb3_B          126 LPILFRSQ  133 (136)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHC
T ss_conf             76554312


No 12 
>>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} (A:)
Probab=98.65  E-value=2.6e-07  Score=71.40  Aligned_cols=101  Identities=12%  Similarity=-0.008  Sum_probs=89.7

Q ss_pred             CEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC---CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEE
Q ss_conf             66899999843699996267877430689636982899998358---101102201074031169851489999427748
Q gi|254780474|r  141 PLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS---VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGA  217 (332)
Q Consensus       141 ~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D---ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~  217 (332)
                      .++|++++..|.+.+.||.      +.|.++.|..|+|++++.+   +.|+|.+|..+.+....||..  ..++++++|+
T Consensus         2 ~~~v~~~~~~~~~~~~f~p------~~i~v~~Gd~V~~~~~n~~htvh~hg~~~~~~~~~~~~~~g~t--~~~~f~~~G~   73 (123)
T 1paz_A            2 NIEVHMLNKGAEGAMVFEP------AYIKANPGDTVTFIPVDKGHNVESIKDMIPEGAEKFKSKINEN--YVLTVTQPGA   73 (123)
T ss_dssp             EEEEEEEEEETTEEEEEES------SEEEECTTCEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCC--EEEECCSCEE
T ss_pred             CEEEEEEECCCCCCEEEEC------CEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCC--EEEECCCCEE
T ss_conf             6899998779997579857------8899889998999989997237741675766532222246863--3796068806


Q ss_pred             EEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf             96661332657611365899970889999999998
Q gi|254780474|r  218 YSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKV  252 (332)
Q Consensus       218 y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~  252 (332)
                      |...|...|+.|   |...++|.++++...+..+.
T Consensus        74 ~~y~C~~h~~~G---M~G~i~V~~~~~~~~~~~~~  105 (123)
T 1paz_A           74 YLVKCTPHYAMG---MIALIAVGDSPANLDQIVSA  105 (123)
T ss_dssp             EEEECTTTGGGT---CEEEEEESSSCTTHHHHHHS
T ss_pred             EEEECCCCCCCC---CEEEEEECCCCCCHHHHHHH
T ss_conf             999815686789---78999999999898998753


No 13 
>>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} (A:)
Probab=98.52  E-value=5.9e-07  Score=68.85  Aligned_cols=105  Identities=13%  Similarity=0.049  Sum_probs=93.0

Q ss_pred             CEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC---CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEE
Q ss_conf             66899999843699996267877430689636982899998358---101102201074031169851489999427748
Q gi|254780474|r  141 PLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS---VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGA  217 (332)
Q Consensus       141 ~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D---ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~  217 (332)
                      .++|++++..|...+.||.      ..|.+++|..|+|.+++++   +.|+|.+|..+.+....||..  ..++.+++|+
T Consensus         2 ~~~v~~~~~~~~~~~~f~p------p~i~v~~Gd~V~~~~~n~~h~ih~hg~~~~~~~~~~~~~pg~t--~~~~f~~~G~   73 (123)
T 1pmy_A            2 EVAVKMLNSGPGGMMVFDP------ALVRLKPGDSIKFLPTDKGHNVETIKGMAPDGADYVKTTVGQE--AVVKFDKEGV   73 (123)
T ss_dssp             EEEEEEEEEETTEEEEEES------SEEEECTTCEEEEECSSSSCCCEECTTSSCTTCCCCBCCTTSC--EEEECCSCEE
T ss_pred             CEEEEEEECCCCCCEEEEC------CEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCC--EEEECCCCCE
T ss_conf             6999998648997479968------8899969998999878988633742567765444322353211--0475368817


Q ss_pred             EEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf             966613326576113658999708899999999986072
Q gi|254780474|r  218 YSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQG  256 (332)
Q Consensus       218 y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~  256 (332)
                      |...|...|..|   |...++|.++.+...+..++..+.
T Consensus        74 ~~y~C~~h~~~G---M~G~i~V~~~~~~~~~~~~~~~~~  109 (123)
T 1pmy_A           74 YGFKCAPHYMMG---MVALVVVGDKRDNLEAAKSVQHNK  109 (123)
T ss_dssp             EEEECSTTTTTT---CEEEEEESSCCTTHHHHHTCCCCH
T ss_pred             EEEEECCCCCCC---CEEEEEECCCCCCHHHHHHHHCCH
T ss_conf             999957786788---679999899987889997640332


No 14 
>>3erx_A Pseudoazurin; copper protein, high-resolution,, copper, electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A (A:)
Probab=98.41  E-value=2.5e-06  Score=64.37  Aligned_cols=103  Identities=12%  Similarity=-0.045  Sum_probs=86.8

Q ss_pred             EEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC---CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEE
Q ss_conf             6899999843699996267877430689636982899998358---1011022010740311698514899994277489
Q gi|254780474|r  142 LVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS---VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAY  218 (332)
Q Consensus       142 l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D---ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y  218 (332)
                      .+|+++...-.+.+.|+.      ++|.+++|.+|+|++++.+   ++|++..|.....+...||...  .++.+++|+|
T Consensus         3 ~~v~v~~~~~~~~~~f~p------~~i~v~~Gd~V~~~~~n~~h~~~~~~~~~~~~~~~~~~~pg~t~--~~~~~~~G~y   74 (123)
T 3erx_A            3 HEVHMLNKGESGAMVFEP------AFVRAEPGDVINFVPTDKSHNVEAIKEILPEGVESFKSKINESY--TLTVTEPGLY   74 (123)
T ss_dssp             EEEEEEEEETTEEEEEES------SEEEECTTEEEEEEESSTTCCCEECTTSSCTTCCCCBCCTTCCE--EEEECSCEEE
T ss_pred             EEEEEEECCCCCCEEEEC------CEEEECCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCE--EEECCCCCEE
T ss_conf             899987658997679837------98998799999983688875223256753334211023577406--8753689549


Q ss_pred             EEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             6661332657611365899970889999999998607
Q gi|254780474|r  219 SGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQ  255 (332)
Q Consensus       219 ~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~  255 (332)
                      ...|...|+.|   |...++|.+++....+..+....
T Consensus        75 ~y~C~~H~~~G---M~G~i~V~~~~~~~~~~~~~~~~  108 (123)
T 3erx_A           75 GVKCTPHFGMG---MVGLVQVGDAPENLDAAKTAKMP  108 (123)
T ss_dssp             EEECGGGTTTT---CEEEEEESSSCTTHHHHHHCCCC
T ss_pred             EEEECCCCCCC---CEEEEEECCCCCCHHHHHHCCCC
T ss_conf             99955278889---78999989999898898653460


No 15 
>>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} (A:)
Probab=98.19  E-value=4.4e-06  Score=62.65  Aligned_cols=85  Identities=15%  Similarity=-0.012  Sum_probs=75.8

Q ss_pred             CEEEEEECCCEEEEEEEECC---CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             30689636982899998358---101102201074031169851489999427748966613326576113658999708
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS---VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS  241 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D---ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s  241 (332)
                      -+.|.+++|.+|+|.+++.+   +.|+|.+|..+.+....||...  .++++++|+|...|+..|..|   |...++|.+
T Consensus        21 p~~i~v~~Gd~V~~~~~~~~h~v~~hg~~~~~~~~~~~~~pg~t~--~~~f~~~G~~~y~C~~H~~~G---M~g~i~V~~   95 (124)
T 3ef4_A           21 PGFVKVEAGDTVKFVPTDKSHNAESVREVWPEGVAPVKGGFSKEV--VFNAEKEGLYVLKCAPHYGMG---MVVLVQVGK   95 (124)
T ss_dssp             SSEEEECTTCEEEEECSSSSCCCEECTTTSCTTSCCCBCCTTCCE--EEECCSSEEEEEECTTTGGGT---CEEEEEESS
T ss_pred             CCEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCE--EEECCCCEEEEEEECCCCCCC---CEEEEEECC
T ss_conf             887998899989997789887437415766666554455545002--344147747999802174689---789999999


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             8999999999860
Q gi|254780474|r  242 EKGFEDWISKVKR  254 (332)
Q Consensus       242 ~~~f~~Wv~~~ka  254 (332)
                      ++++++|..+...
T Consensus        96 ~~~~~~~~~~~~~  108 (124)
T 3ef4_A           96 PVNLDQIKEYKAT  108 (124)
T ss_dssp             CTTHHHHHHSCCC
T ss_pred             CCCHHHHHHCCCC
T ss_conf             8998999755351


No 16 
>>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} (A:)
Probab=97.70  E-value=0.00024  Score=50.34  Aligned_cols=88  Identities=17%  Similarity=0.092  Sum_probs=73.7

Q ss_pred             CCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEEC---CCCHHCCCHHHCCEECCCCCCCEEEEEEECC
Q ss_conf             8886689999984369999626787743068963698289999835---8101102201074031169851489999427
Q gi|254780474|r  138 NSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITAS---SVMNSFYIPGLAGQIYAMAGMETKLHAVMNK  214 (332)
Q Consensus       138 ~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~---DViHSF~IP~l~~k~daiPG~~t~l~~~a~~  214 (332)
                      .....++++++.+..    |      .-++|.+++|.+|+|..++.   +|.|.+.+...+...+..||......+++++
T Consensus        16 ~~~~~~v~i~~~~~~----f------~p~~i~v~~G~~V~~~n~~~~~h~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~~   85 (106)
T 1id2_A           16 DVPADAVVVGIEKMK----Y------LTPEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNE   85 (106)
T ss_dssp             GSCTTCEEEEEETTE----E------SSSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECS
T ss_pred             CCCCCCEEEECCCCE----E------ECCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             688734798466798----9------799989899999999989999747998478887653333545899668897368


Q ss_pred             CEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             74896661332657611365899970
Q gi|254780474|r  215 KGAYSGFSANYSGRGFSHMRFKFYGK  240 (332)
Q Consensus       215 ~G~y~G~cae~cG~ghs~M~f~v~v~  240 (332)
                      +|+|.-.|.     .|..|+.+++|.
T Consensus        86 ~G~y~~~C~-----~h~~M~G~iiV~  106 (106)
T 1id2_A           86 AGSYDYFCT-----PHPFMRGKVIVE  106 (106)
T ss_dssp             CEEEEEECS-----SCTTCEEEEEEC
T ss_pred             CCEEEEEEC-----CCCCCEEEEEEC
T ss_conf             838999824-----899974999989


No 17 
>>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus SP} (A:)
Probab=97.18  E-value=0.002  Score=43.66  Aligned_cols=71  Identities=13%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             CEEEEEECCCEEEEEEEEC---CCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             3068963698289999835---810110220107403116985148999942774896661332657611365899970
Q gi|254780474|r  165 INELVVPIDRPLEFRITAS---SVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK  240 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~---DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~  240 (332)
                      -.+|.+++|..|+|..++.   ++.|.+..+........-||..  ..++.+++|+|...|+..|+.|   |...+.|.
T Consensus        18 p~~i~v~~Gd~V~~~n~~~~~h~v~~~~~~~~~~~~~~~~~g~~--~~~tf~~~G~y~y~C~~H~~~g---M~g~i~Ve   91 (91)
T 1bxv_A           18 PSTIEIQAGDTVQWVNNKLAPHNVVVEGQPELSHKDLAFSPGET--FEATFSEPGTYTYYCEPHRGAG---MVGKIVVQ   91 (91)
T ss_dssp             SSEEEECTTCEEEEEECSSCCEEEEETTCGGGCEEEEECSTTCE--EEEECCSCEEEEEECTTTGGGT---CEEEEEEC
T ss_pred             CCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC--EEEEEECCCEEEEEECCCCCCC---CEEEEEEC
T ss_conf             99999989999999989857702872365433234446379984--7999603976999957789999---88999989


No 18 
>>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} (A:)
Probab=97.12  E-value=0.0037  Score=41.83  Aligned_cols=87  Identities=11%  Similarity=0.032  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC----CC-HHCCCHHHCCEECCCCCCCEEEEEE
Q ss_conf             888866899999843699996267877430689636982899998358----10-1102201074031169851489999
Q gi|254780474|r  137 KNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS----VM-NSFYIPGLAGQIYAMAGMETKLHAV  211 (332)
Q Consensus       137 ~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D----Vi-HSF~IP~l~~k~daiPG~~t~l~~~  211 (332)
                      .+....+|.|...+|.|          .-++|.+|+|+.|+|..++..    +. |.+..+....+...-||  ....++
T Consensus        14 ~~~~~~~v~v~~~~~~f----------~p~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~g--~~~~~t   81 (105)
T 2ov0_A           14 AEVADGAIVVDIAKMKY----------ETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKE--QAYSLT   81 (105)
T ss_dssp             GGCCTTCEEEEEETTEE----------SSSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTT--EEEEEE
T ss_pred             CCCCCCCEEEECCCCEE----------ECCEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCC--CEEEEE
T ss_conf             54566215997124788----------499999889999999889989811898210267653456653689--617998


Q ss_pred             ECCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             42774896661332657611365899970
Q gi|254780474|r  212 MNKKGAYSGFSANYSGRGFSHMRFKFYGK  240 (332)
Q Consensus       212 a~~~G~y~G~cae~cG~ghs~M~f~v~v~  240 (332)
                      ++++|+|.-.|.     .|..|+..++|.
T Consensus        82 f~~pG~y~~~C~-----~h~~M~G~ivV~  105 (105)
T 2ov0_A           82 FTEAGTYDYHCT-----PHPFMRGKVVVE  105 (105)
T ss_dssp             ECSCEEEEEECS-----SCTTCEEEEEEC
T ss_pred             ECCCCEEEEEEC-----CCCCCEEEEEEC
T ss_conf             406808999856-----889987999989


No 19 
>>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} (A:)
Probab=96.61  E-value=0.012  Score=38.23  Aligned_cols=73  Identities=14%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             CEEEEEECCCEEEEEEEECC----CCHHCC-----CHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEE
Q ss_conf             30689636982899998358----101102-----201074031169851489999427748966613326576113658
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS----VMNSFY-----IPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRF  235 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D----ViHSF~-----IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f  235 (332)
                      -..|.+.+|..|+|.+++..    ..|++.     .+.-+......||-...+.++++++|+|.-.|...|+.|   |..
T Consensus        17 ~~~i~v~~Gd~V~~~n~~~~~h~~h~hg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~G~~~yhC~~H~~~G---M~G   93 (98)
T 1iuz_A           17 PSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPGVYGVYCEPHAGAG---MKM   93 (98)
T ss_dssp             SSEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSCEEEEEECTTTGGGT---CEE
T ss_pred             CCEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCC---CEE
T ss_conf             89999999999999999998620687067666676555545556556898569998889987999943675689---769


Q ss_pred             EEEEC
Q ss_conf             99970
Q gi|254780474|r  236 KFYGK  240 (332)
Q Consensus       236 ~v~v~  240 (332)
                      .++|.
T Consensus        94 ~i~Ve   98 (98)
T 1iuz_A           94 TITVQ   98 (98)
T ss_dssp             EEEEC
T ss_pred             EEEEC
T ss_conf             99989


No 20 
>>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ... (A:)
Probab=96.36  E-value=0.0055  Score=40.59  Aligned_cols=72  Identities=11%  Similarity=0.112  Sum_probs=56.4

Q ss_pred             CCEEEEEE-CCCEEEEEEEECC------CCHHCCCHHHCC----------------------------EECCCCCCCEEE
Q ss_conf             43068963-6982899998358------101102201074----------------------------031169851489
Q gi|254780474|r  164 IINELVVP-IDRPLEFRITASS------VMNSFYIPGLAG----------------------------QIYAMAGMETKL  208 (332)
Q Consensus       164 tvneL~lP-v~~pV~f~ltS~D------ViHSF~IP~l~~----------------------------k~daiPG~~t~l  208 (332)
                      .-.++.+| .|.+|+|.++..+      ..|.|-++.-+.                            ..-..||...++
T Consensus        16 ~p~~i~V~k~G~tV~~~~~N~g~~~~~~~~Hn~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~~~   95 (125)
T 3fsa_A           16 NTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSV   95 (125)
T ss_dssp             SCSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEE
T ss_pred             CCCEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             37778996699889999996997853488624333476127999999976452014679886441000101077850599


Q ss_pred             EEEE---CCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             9994---2774896661332657611365899970
Q gi|254780474|r  209 HAVM---NKKGAYSGFSANYSGRGFSHMRFKFYGK  240 (332)
Q Consensus       209 ~~~a---~~~G~y~G~cae~cG~ghs~M~f~v~v~  240 (332)
                      .|++   +++|+|.-.|     .+|+.|..+++|.
T Consensus        96 tF~~~~~~~~G~Y~y~C-----~~H~gM~Gti~Ve  125 (125)
T 3fsa_A           96 TFDVSKLKEGEQYMFFC-----AAHAAMKGTLTLK  125 (125)
T ss_dssp             EEEGGGC---CCEEEEC-----SSSTTCEEEEEEC
T ss_pred             EEEECCCCCCEEEEEEC-----CCCCCCEEEEEEC
T ss_conf             99834778888599979-----9865727999989


No 21 
>>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A (A:)
Probab=96.19  E-value=0.091  Score=31.92  Aligned_cols=89  Identities=10%  Similarity=-0.029  Sum_probs=60.1

Q ss_pred             EEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEEC--CCCHHCCCHHHC-CEECCCCCCCEEEEEEECCCEEE
Q ss_conf             689999984369999626787743068963698289999835--810110220107-40311698514899994277489
Q gi|254780474|r  142 LVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITAS--SVMNSFYIPGLA-GQIYAMAGMETKLHAVMNKKGAY  218 (332)
Q Consensus       142 l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~--DViHSF~IP~l~-~k~daiPG~~t~l~~~a~~~G~y  218 (332)
                      .+|+++..-..=.+.|+      -..|.++.|..|.|..++.  ++.|.+..-..+ -..-.-||-.  ..++.+++|+|
T Consensus         3 ~~V~v~~~~~~~~~~f~------p~~i~v~~Gd~V~~~~~~~~h~~~~~~~~~~~~~~~~~~~pg~t--~~~tf~~~G~y   74 (122)
T 2ux6_A            3 FEVHMLNKGKDGAMVFE------PASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINEN--YKVTFTAPGVY   74 (122)
T ss_dssp             EEEEEEEEETTEEEEEE------SSEEEECTTEEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCC--EEEEECSCEEE
T ss_pred             EEEEEEECCCCCCEEEE------CCEEEECCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCC--EEEECCCCEEE
T ss_conf             49998776899766782------89899869999999989988640531324677655543234531--01114677179


Q ss_pred             EEECCCCCCCCCCCCEEEEEECCHH
Q ss_conf             6661332657611365899970889
Q gi|254780474|r  219 SGFSANYSGRGFSHMRFKFYGKSEK  243 (332)
Q Consensus       219 ~G~cae~cG~ghs~M~f~v~v~s~~  243 (332)
                      .-.|.     -|..|++.++|.++.
T Consensus        75 ~~~C~-----iH~gM~g~i~V~~~~   94 (122)
T 2ux6_A           75 GVKCT-----PHPFMVGVVQVGDAP   94 (122)
T ss_dssp             EEEET-----TEEEEEEEEEESSSC
T ss_pred             EEEEC-----CCCCCEEEEEECCCC
T ss_conf             99803-----788988999999999


No 22 
>>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} (A:)
Probab=95.89  E-value=0.073  Score=32.61  Aligned_cols=86  Identities=13%  Similarity=0.178  Sum_probs=62.0

Q ss_pred             EEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC----CCHHCCCHHH-----CCEECCCCCCCEEEEEEE
Q ss_conf             6899999843699996267877430689636982899998358----1011022010-----740311698514899994
Q gi|254780474|r  142 LVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS----VMNSFYIPGL-----AGQIYAMAGMETKLHAVM  212 (332)
Q Consensus       142 l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D----ViHSF~IP~l-----~~k~daiPG~~t~l~~~a  212 (332)
                      ++|++..-+=.|.|.-        +.|.+++|..|+|.++++.    .+|++..|..     .......||-  ...++.
T Consensus         3 ~~v~v~~~~~~~~f~p--------~~i~v~~Gd~V~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~pg~--t~~~~f   72 (97)
T 1b3i_A            3 VQIKMGTDKYAPLYEP--------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKLAIAPGS--FYSVTL   72 (97)
T ss_dssp             EEEEEEETTTEEEEES--------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCCCCSCSC--CEEEEC
T ss_pred             EEEEECCCCCCEEECC--------CEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC--EEEEEE
T ss_conf             9999761898438819--------989998999999998998851279821787454443334555668984--699982


Q ss_pred             CCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             2774896661332657611365899970
Q gi|254780474|r  213 NKKGAYSGFSANYSGRGFSHMRFKFYGK  240 (332)
Q Consensus       213 ~~~G~y~G~cae~cG~ghs~M~f~v~v~  240 (332)
                      +++|+|.-.|+.-|..|   |...++|.
T Consensus        73 ~~~G~~~y~C~~H~~~G---M~G~i~Ve   97 (97)
T 1b3i_A           73 GTPGTYSFYCTPHRGAG---MVGTITVE   97 (97)
T ss_dssp             CSCSEEEEECSSTTTTT---CEEEEEEC
T ss_pred             CCCEEEEEEECCCCCCC---CEEEEEEC
T ss_conf             38808999856786678---76999989


No 23 
>>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} (A:)
Probab=95.87  E-value=0.037  Score=34.76  Aligned_cols=74  Identities=15%  Similarity=0.054  Sum_probs=53.4

Q ss_pred             CCEEEEEECCCEEEEEEEECCC-C--------HHCCCHH-----------------------HCCEECCCCCCCEEEEEE
Q ss_conf             4306896369828999983581-0--------1102201-----------------------074031169851489999
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSV-M--------NSFYIPG-----------------------LAGQIYAMAGMETKLHAV  211 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DV-i--------HSF~IP~-----------------------l~~k~daiPG~~t~l~~~  211 (332)
                      ..+.+.++.|..|++.++..+- +        |.|.+-.                       ++...+.-||...++.|+
T Consensus        33 ~~~~~~v~~g~~v~~~l~N~~~~~~h~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~~i~pG~~~~~~f~  112 (139)
T 2aan_A           33 DKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVTFT  112 (139)
T ss_dssp             SCSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEEEE
T ss_pred             ECCEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEE
T ss_conf             05779987999899999808975421788605765203566776542041014543344320001334567521799995


Q ss_pred             ECCCEEEEEECCCCCCCCCCCCEEEEEE
Q ss_conf             4277489666133265761136589997
Q gi|254780474|r  212 MNKKGAYSGFSANYSGRGFSHMRFKFYG  239 (332)
Q Consensus       212 a~~~G~y~G~cae~cG~ghs~M~f~v~v  239 (332)
                      +|++|+|.-.|.-.+=.  +.|...++|
T Consensus       113 ad~pG~~~~HChi~~H~--~GM~g~i~V  138 (139)
T 2aan_A          113 APAAGTYLYICTVPGHY--PLMQGKLVV  138 (139)
T ss_dssp             CCSSEEEEEECCSTTTT--TTSEEEEEE
T ss_pred             CCCCEEEEEEECCCCCC--CCCEEEEEE
T ss_conf             79985799997999932--165699998


No 24 
>>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} (A:1-146)
Probab=95.79  E-value=0.07  Score=32.76  Aligned_cols=101  Identities=9%  Similarity=0.014  Sum_probs=74.6

Q ss_pred             EEEEEEEEEEEEEEEECC--CCCCCCEEEEEECCCEEEEEEEE---CCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCE
Q ss_conf             689999984369999626--78774306896369828999983---5810110220107403116985148999942774
Q gi|254780474|r  142 LVVEVVALDWKWLFLLPE--QQVAIINELVVPIDRPLEFRITA---SSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKG  216 (332)
Q Consensus       142 l~I~V~a~qW~W~F~YP~--~giatvneL~lPv~~pV~f~ltS---~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G  216 (332)
                      .+++.+...=...+.+--  .+...--.|++-.|..|++.++-   ..-.|.|--+..+.+....||..-...|+++++|
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~gp~i~~~~Gd~v~v~l~N~~~~~~~~~~hg~~~~~~~~i~PG~t~~y~f~a~~~G  108 (146)
T 2dv6_A           29 FTLRTGIAEGRMVYIGVGGDIDHKINPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVNGKNASSTFSFVASKVG  108 (146)
T ss_dssp             EEEEEEEETTEEEEEEESGGGTTCBSCCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBCSTTBEEEEEEECCSCE
T ss_pred             EEEEEECCCCCEEECCCCEEECCCCCCCEEECCCCEEEEEEECCCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCC
T ss_conf             99874113562797355303689508857867899899999879985278983886542341389981589999559973


Q ss_pred             EEEEECCCCCCCCCCCCEEEEEECCHH
Q ss_conf             896661332657611365899970889
Q gi|254780474|r  217 AYSGFSANYSGRGFSHMRFKFYGKSEK  243 (332)
Q Consensus       217 ~y~G~cae~cG~ghs~M~f~v~v~s~~  243 (332)
                      +|.-.|...| ...+.|...++|.+++
T Consensus       109 t~~yHch~~~-h~~~Gm~G~iiV~~~~  134 (146)
T 2dv6_A          109 EFNYYCSIAG-HRQAGMEGNIQVLPGN  134 (146)
T ss_dssp             EEEEECCSTT-HHHHTCEEEEEEESSC
T ss_pred             CEEEEEECCC-HHHCCCCCCCCCCCCC
T ss_conf             6899993484-5437785300124455


No 25 
>>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} (A:)
Probab=95.55  E-value=0.066  Score=32.94  Aligned_cols=69  Identities=12%  Similarity=0.071  Sum_probs=57.7

Q ss_pred             CEEEEEECCCEEEEEEEEC-----CCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEE
Q ss_conf             3068963698289999835-----81011022010740311698514899994277489666133265761136589997
Q gi|254780474|r  165 INELVVPIDRPLEFRITAS-----SVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYG  239 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~-----DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v  239 (332)
                      -.+|.++.|..|+|+.++.     +..|.+-.+....+...-||..  ...+++++|+|.-.|.     -|..|..+++|
T Consensus        59 p~~i~v~~Gd~V~~~~~n~~~h~~~~~~~~~~~~~~~~~~i~pg~t--~~~tf~~~G~y~y~C~-----~h~gM~G~iiV  131 (132)
T 3c75_A           59 TPEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQA--YAITFNEAGSYDYFCT-----PHPFMRGKVIV  131 (132)
T ss_dssp             SSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEE--EEEEECSCEEEEEECS-----SCTTCEEEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCE--EEEECCCCEEEEEEEC-----CCCCCEEEEEE
T ss_conf             9999989999999998998850189626767754556667589974--8997789989999817-----98687799998


Q ss_pred             C
Q ss_conf             0
Q gi|254780474|r  240 K  240 (332)
Q Consensus       240 ~  240 (332)
                      .
T Consensus       132 ~  132 (132)
T 3c75_A          132 E  132 (132)
T ss_dssp             C
T ss_pred             C
T ss_conf             9


No 26 
>>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} (A:)
Probab=95.55  E-value=0.079  Score=32.39  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=54.6

Q ss_pred             CCEEEEEECC-CEEEEEEEECCCC------HHCCCHH----------------------------HCCEECCCCCCCEEE
Q ss_conf             4306896369-8289999835810------1102201----------------------------074031169851489
Q gi|254780474|r  164 IINELVVPID-RPLEFRITASSVM------NSFYIPG----------------------------LAGQIYAMAGMETKL  208 (332)
Q Consensus       164 tvneL~lPv~-~pV~f~ltS~DVi------HSF~IP~----------------------------l~~k~daiPG~~t~l  208 (332)
                      ..++|.+++| ++|+|.++.++-+      |.|-+.+                            +.......||....+
T Consensus        16 ~p~~i~v~~Gd~~v~i~~~N~~~~~h~~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~pGet~~~   95 (129)
T 1cuo_A           16 STRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSV   95 (129)
T ss_dssp             SCSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEE
T ss_pred             CCCEEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCHHHCCCCCCCCCCEEECCCCCCCCEEEE
T ss_conf             17758992898379999997995764420256896164117789998876253225678664000210210289955899


Q ss_pred             EEEE---CCCEEEEEECCCCCCCCC-CCCEEEEEECC
Q ss_conf             9994---277489666133265761-13658999708
Q gi|254780474|r  209 HAVM---NKKGAYSGFSANYSGRGF-SHMRFKFYGKS  241 (332)
Q Consensus       209 ~~~a---~~~G~y~G~cae~cG~gh-s~M~f~v~v~s  241 (332)
                      .|++   +++|+|.-.|.-   .|| +.|..+++|..
T Consensus        96 ~ft~~~~~~pG~Y~y~C~~---pgH~aGM~G~i~V~e  129 (129)
T 1cuo_A           96 KFKVSALSKDEAYTYFCSY---PGHFSMMRGTLKLEE  129 (129)
T ss_dssp             EEEGGGCCTTSCEEEECCS---TTCTTTSEEEEEEEC
T ss_pred             EEEEECCCCCCEEEEEECC---CCCCCCCEEEEEEEC
T ss_conf             9985525899449999499---985459789999939


No 27 
>>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin- like, thermophIle; 1.55A {Chloroflexus aurantiacus} (A:)
Probab=94.81  E-value=0.2  Score=29.44  Aligned_cols=76  Identities=12%  Similarity=0.020  Sum_probs=55.5

Q ss_pred             CCEEEEEECCCEEEEEEEECCC-CHHCCCH--------------------------------HHCCEECCCCCCCEEEEE
Q ss_conf             4306896369828999983581-0110220--------------------------------107403116985148999
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSV-MNSFYIP--------------------------------GLAGQIYAMAGMETKLHA  210 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DV-iHSF~IP--------------------------------~l~~k~daiPG~~t~l~~  210 (332)
                      .-+.+.++.|+.|++.++-.+- .|.|-+-                                ..+-..+..||....+.|
T Consensus        31 ~~~~~~v~~G~~v~~~l~N~~~~~h~~~~h~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~~i~pg~~~~~~f  110 (140)
T 1qhq_A           31 AQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTF  110 (140)
T ss_dssp             SCSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEE
T ss_pred             ECCEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             06869987999999999888877357898725564157899988765311113456998520002462118984699999


Q ss_pred             EECCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             942774896661332657611365899970
Q gi|254780474|r  211 VMNKKGAYSGFSANYSGRGFSHMRFKFYGK  240 (332)
Q Consensus       211 ~a~~~G~y~G~cae~cG~ghs~M~f~v~v~  240 (332)
                      +++++|+|.-.|.-.+ -....|...++|.
T Consensus       111 ~~~~~G~~~~hCHi~~-H~~~GM~~~l~V~  139 (140)
T 1qhq_A          111 RTPAPGTYLYICTFPG-HYLAGMKGTLTVT  139 (140)
T ss_dssp             ECCSSEEEEEECCSTT-TTTTTCEEEEEEE
T ss_pred             ECCCCEEEEEECCCCC-HHHCCCEEEEEEC
T ss_conf             6689816999869842-3033476899986


No 28 
>>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} (A:)
Probab=94.78  E-value=0.093  Score=31.88  Aligned_cols=73  Identities=14%  Similarity=0.141  Sum_probs=55.6

Q ss_pred             CEEEEEECCCEEEEEEEECC----CCHHCCCHHHCC----------EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf             30689636982899998358----101102201074----------0311698514899994277489666133265761
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS----VMNSFYIPGLAG----------QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF  230 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D----ViHSF~IP~l~~----------k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh  230 (332)
                      -+.|.+.+|..|+|.+++..    .+|.+..+..+.          +-+..++-.....++++++|+|.-.|..-|..| 
T Consensus        16 ~~~i~v~~Gd~V~~~~~~~~~H~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~p~~t~~~~~~~~G~y~yhC~~H~~~G-   94 (102)
T 1kdj_A           16 PDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYCTPHKSAN-   94 (102)
T ss_dssp             SSEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECCCSCEEEEEECSTTGGGT-
T ss_pred             CCEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCC-
T ss_conf             9999988999999999999984189706787776544455667756555346897479999489867999958786579-


Q ss_pred             CCCEEEEEEC
Q ss_conf             1365899970
Q gi|254780474|r  231 SHMRFKFYGK  240 (332)
Q Consensus       231 s~M~f~v~v~  240 (332)
                        |...++|.
T Consensus        95 --M~G~ivVe  102 (102)
T 1kdj_A           95 --MKGTLTVK  102 (102)
T ss_dssp             --CEEEEEEC
T ss_pred             --CEEEEEEC
T ss_conf             --76999989


No 29 
>>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant; 1.75A {Silene pratensis} (A:)
Probab=94.67  E-value=0.18  Score=29.86  Aligned_cols=73  Identities=18%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             CCEEEEEECCCEEEEEEEECC----CCHHCCCHHHCCEECCCCCCCE-------EEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf             430689636982899998358----1011022010740311698514-------89999427748966613326576113
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASS----VMNSFYIPGLAGQIYAMAGMET-------KLHAVMNKKGAYSGFSANYSGRGFSH  232 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~D----ViHSF~IP~l~~k~daiPG~~t-------~l~~~a~~~G~y~G~cae~cG~ghs~  232 (332)
                      ..+.|.+.+|..|+|.+++..    .+|...++......+.-+...+       ...+++++||+|.-.|.--|..|   
T Consensus        15 ~~~~i~v~~Gd~V~~~~~n~~~H~~~~h~~~~~~~~~~~~~~~~~~~~~i~pg~t~~~~f~~pG~~~yhC~~H~~~G---   91 (99)
T 1byp_A           15 VPSDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAPHAGAG---   91 (99)
T ss_dssp             ESSEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCEEEEEECGGGTTTT---
T ss_pred             CCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCC---
T ss_conf             39999989999999999998842268734777876531467665456555898569999668954999977787789---


Q ss_pred             CEEEEEE
Q ss_conf             6589997
Q gi|254780474|r  233 MRFKFYG  239 (332)
Q Consensus       233 M~f~v~v  239 (332)
                      |...++|
T Consensus        92 M~G~i~V   98 (99)
T 1byp_A           92 MVGKVTV   98 (99)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
T ss_conf             8899998


No 30 
>>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} (A:)
Probab=94.66  E-value=0.21  Score=29.31  Aligned_cols=70  Identities=21%  Similarity=0.301  Sum_probs=51.2

Q ss_pred             CEEEEEECCCEEEEEEEEC----CCCHHCCCHH---------HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf             3068963698289999835----8101102201---------07403116985148999942774896661332657611
Q gi|254780474|r  165 INELVVPIDRPLEFRITAS----SVMNSFYIPG---------LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFS  231 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~----DViHSF~IP~---------l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs  231 (332)
                      -+.|.+.+|..|+|.+++.    -.+|...++.         ...+.-..||-  ...++.++||+|.-.|.-.|..|  
T Consensus        16 ~~~i~v~~Gd~V~~~~~n~~~h~~~~h~~~~~~~~~~~~~~~~~~~~~i~pg~--t~~~~f~~pG~~~y~C~~h~~~G--   91 (99)
T 1plc_A           16 PSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGE--TFEVALSNKGEYSFYCSPHQGAG--   91 (99)
T ss_dssp             SSEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTC--EEEEECCSCEEEEEECGGGTTTT--
T ss_pred             CCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCCEEEEEECCCCCCC--
T ss_conf             89999889999999999999621787057777765235775445665458885--69999657862999807887678--


Q ss_pred             CCEEEEEE
Q ss_conf             36589997
Q gi|254780474|r  232 HMRFKFYG  239 (332)
Q Consensus       232 ~M~f~v~v  239 (332)
                       |...++|
T Consensus        92 -M~G~i~V   98 (99)
T 1plc_A           92 -MVGKVTV   98 (99)
T ss_dssp             -CEEEEEE
T ss_pred             -CEEEEEE
T ss_conf             -6799998


No 31 
>>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} (B:188-336)
Probab=93.39  E-value=0.38  Score=27.55  Aligned_cols=81  Identities=10%  Similarity=-0.039  Sum_probs=60.2

Q ss_pred             CCCCEEEEEECCCEEEEEEEEC---CCCH-----HCCCHHHC------CEECCCCCCCEEEEEEECCCEEEEEECCCCCC
Q ss_conf             7743068963698289999835---8101-----10220107------40311698514899994277489666133265
Q gi|254780474|r  162 VAIINELVVPIDRPLEFRITAS---SVMN-----SFYIPGLA------GQIYAMAGMETKLHAVMNKKGAYSGFSANYSG  227 (332)
Q Consensus       162 iatvneL~lPv~~pV~f~ltS~---DViH-----SF~IP~l~------~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG  227 (332)
                      ....+.|.++.|..|+++++..   +-.|     ....+..+      ......||-...+.++++++|+|.-.|.... 
T Consensus        48 ~~~~~~i~~~~G~~v~~~v~N~~~~~~~h~iH~HG~~~~~~~~~~~~~~~~~i~pg~~~~~~f~a~~~G~~~~HcHi~~-  126 (149)
T 1sdd_B           48 IYNLPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGE-  126 (149)
T ss_dssp             SSCCCCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSCEEESSEEECTTEEEEEEEECCSSEEEEEECCCHH-
T ss_pred             ECCCCCEEEECCCEEEEEEEECCCCCCCEEEEEECCEEEECCCCCCEECEEEECCCEEEEEEEECCCCEEEEEEECCHH-
T ss_conf             0677875983699899999957899874238991859998267882513499699508999999689878999926625-


Q ss_pred             CCCCCCEEEEEECCHH
Q ss_conf             7611365899970889
Q gi|254780474|r  228 RGFSHMRFKFYGKSEK  243 (332)
Q Consensus       228 ~ghs~M~f~v~v~s~~  243 (332)
                      .-.+.|...+++.+++
T Consensus       127 h~~~GM~g~~iV~~~~  142 (149)
T 1sdd_B          127 IQRAGMQTPFLIVDRE  142 (149)
T ss_dssp             HHTTTCEEEEEEECTT
T ss_pred             HHHCCCCCCEEECCCC
T ss_conf             7637133421231333


No 32 
>>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} (A:213-363)
Probab=92.05  E-value=0.38  Score=27.55  Aligned_cols=79  Identities=8%  Similarity=-0.011  Sum_probs=61.8

Q ss_pred             CCEEEEEECCCEEEEEEEECCCC--------HHCCCHHHCCEE---CCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf             43068963698289999835810--------110220107403---1169851489999427748966613326576113
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSVM--------NSFYIPGLAGQI---YAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH  232 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DVi--------HSF~IP~l~~k~---daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~  232 (332)
                      ....+.+..|..|++.++..+-+        |.|++..-+...   ..-||-...+.|.|+.+|+|.-.|--.+ --.+.
T Consensus        57 ~~~~i~~~~gd~v~~~i~N~~~~~h~~~iH~Hg~~~~~~~~~~~~~~i~pg~~~~~~f~ad~pG~w~~HCHi~~-H~~~G  135 (151)
T 2j5w_A           57 SLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLN-HLKAG  135 (151)
T ss_dssp             CCCCCEEETTCEEEEEEEECSSTTCCEEEEETTCCEEETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHH-HHHTT
T ss_pred             CCCCCEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCEEEECCCCEEEEEEECCCCCCEEECCCCCH-HHHCC
T ss_conf             88871786798899999957788745578976953224870314499799728999998389851244133420-44268


Q ss_pred             CEEEEEECCHH
Q ss_conf             65899970889
Q gi|254780474|r  233 MRFKFYGKSEK  243 (332)
Q Consensus       233 M~f~v~v~s~~  243 (332)
                      |...++|.+++
T Consensus       136 M~g~~~V~~~~  146 (151)
T 2j5w_A          136 LQAFFQVQECN  146 (151)
T ss_dssp             CEEEEEEECSC
T ss_pred             CEEEEEECCCC
T ss_conf             47899864687


No 33 
>>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} (A:)
Probab=91.93  E-value=0.62  Score=26.03  Aligned_cols=70  Identities=19%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             CEEEEEECCCEEEEEEEECC----CCHHCCCHHHC-------CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             30689636982899998358----10110220107-------40311698514899994277489666133265761136
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS----VMNSFYIPGLA-------GQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM  233 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D----ViHSF~IP~l~-------~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M  233 (332)
                      -+.|.+.+|..|+|..+.+.    .+|++..|...       .+...-||-  ...++.+++|+|.-.|.--|..|   |
T Consensus        17 ~~~i~v~~Gd~V~~~n~~~~~h~~~~hg~~~~~~~~~~~~~~~~~~i~pg~--t~~~~f~~~G~y~yhC~~h~~~G---M   91 (98)
T 2plt_A           17 PKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGE--TYSVKLTAAGEYGYYCEPHQGAG---M   91 (98)
T ss_dssp             SSEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTC--EEEEECCSCEEEEEECGGGGGGT---C
T ss_pred             CCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCCEEEEEECCCCCCC---C
T ss_conf             899998799989999899885018994586213556775455655668985--69999658964999967688899---8


Q ss_pred             EEEEEE
Q ss_conf             589997
Q gi|254780474|r  234 RFKFYG  239 (332)
Q Consensus       234 ~f~v~v  239 (332)
                      ...++|
T Consensus        92 ~G~i~V   97 (98)
T 2plt_A           92 VGKIIV   97 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             899998


No 34 
>>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} (A:)
Probab=91.69  E-value=0.76  Score=25.39  Aligned_cols=74  Identities=19%  Similarity=0.171  Sum_probs=57.3

Q ss_pred             CCEEEEEECCCEEEEEEEEC----CCCHHCCCHHH---------CCEECCCCCCCEEEEEEE-CCCEEEEEECCCCCCCC
Q ss_conf             43068963698289999835----81011022010---------740311698514899994-27748966613326576
Q gi|254780474|r  164 IINELVVPIDRPLEFRITAS----SVMNSFYIPGL---------AGQIYAMAGMETKLHAVM-NKKGAYSGFSANYSGRG  229 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~----DViHSF~IP~l---------~~k~daiPG~~t~l~~~a-~~~G~y~G~cae~cG~g  229 (332)
                      .-..|.+.+|..|+|+++..    -.+|...+|..         ..+....||.+-+..|.+ +++|+|.-.|.--|-.|
T Consensus        18 ~~p~i~v~~Gd~V~~~~~N~~~h~~~~h~~~~~~~~~~~~~~~~~~~~~i~Pg~~~~~~f~~~~~~Gt~~yhch~H~~~G   97 (106)
T 2gim_A           18 EPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAG   97 (106)
T ss_dssp             ESSEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECTTTGGGT
T ss_pred             ECCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC
T ss_conf             79999999999999998998974288725787665434566456553012788417899804778822999947786788


Q ss_pred             CCCCEEEEEEC
Q ss_conf             11365899970
Q gi|254780474|r  230 FSHMRFKFYGK  240 (332)
Q Consensus       230 hs~M~f~v~v~  240 (332)
                         |...++|.
T Consensus        98 ---M~G~i~Ve  105 (106)
T 2gim_A           98 ---MVGKITVA  105 (106)
T ss_dssp             ---CEEEEEEC
T ss_pred             ---CEEEEEEE
T ss_conf             ---57999996


No 35 
>>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} (A:160-333)
Probab=91.48  E-value=0.66  Score=25.81  Aligned_cols=79  Identities=11%  Similarity=0.026  Sum_probs=59.8

Q ss_pred             CCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCE------------------ECCCCCCCEEEEEEECCCEEEEEECCCC
Q ss_conf             4306896369828999983581011022010740------------------3116985148999942774896661332
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSVMNSFYIPGLAGQ------------------IYAMAGMETKLHAVMNKKGAYSGFSANY  225 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k------------------~daiPG~~t~l~~~a~~~G~y~G~cae~  225 (332)
                      ....+.+-.|..|+|.+....-.|+|-+-....+                  +..-||-...+.++|+.||+|.--|-.+
T Consensus        64 ~~~~~~~~~ge~v~~~~n~~~~~hp~H~hg~~f~~~~~~G~~~~~~~~~~dTi~v~pg~~~~i~~~ad~PG~w~~HCH~~  143 (174)
T 1mzy_A           64 GEGALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNHNL  143 (174)
T ss_dssp             GGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEETTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESSH
T ss_pred             CCCCCEECCCCEEEEEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCHH
T ss_conf             87563624698899998268788773552267319997973158886662359989982399999889992789975707


Q ss_pred             CCCCCCCCEEEEEECCH
Q ss_conf             65761136589997088
Q gi|254780474|r  226 SGRGFSHMRFKFYGKSE  242 (332)
Q Consensus       226 cG~ghs~M~f~v~v~s~  242 (332)
                      .-..-+.|...+.|...
T Consensus       144 ~~h~~~Gm~~~~~V~~~  160 (174)
T 1mzy_A          144 IEAVHKGATAHVLVEGE  160 (174)
T ss_dssp             HHHHTTCCEEEEEEESC
T ss_pred             HHHHHCCCEEEEEEECC
T ss_conf             78985489799998178


No 36 
>>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} (A:1-159)
Probab=91.26  E-value=1  Score=24.45  Aligned_cols=81  Identities=16%  Similarity=0.023  Sum_probs=65.3

Q ss_pred             CCEEEEEECCCEEEEEEEEC-CCCHHCCC--------HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC--
Q ss_conf             43068963698289999835-81011022--------01074031169851489999427748966613326576113--
Q gi|254780474|r  164 IINELVVPIDRPLEFRITAS-SVMNSFYI--------PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH--  232 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~-DViHSF~I--------P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~--  232 (332)
                      ---.|++-.|..|+++++-+ ++.|++..        +.-..+...-||-.-...|.++++|.|.=.|..+||.-+.+  
T Consensus        62 pgP~i~v~~Gd~v~i~~~N~l~~~h~~~~~~~~~~~~~~~~~~~~i~PG~t~ty~f~~~~~Gt~~~h~h~~~~~~~~q~~  141 (159)
T 1mzy_A           62 PGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV  141 (159)
T ss_dssp             SCCEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred             CCCEEEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCEEECCCCCCCCCCHHH
T ss_conf             79649997798999998538998037430110578899988712578999899999768986441655777766320101


Q ss_pred             --CEEEEEECCHHH
Q ss_conf             --658999708899
Q gi|254780474|r  233 --MRFKFYGKSEKG  244 (332)
Q Consensus       233 --M~f~v~v~s~~~  244 (332)
                        |...+++.++++
T Consensus       142 ~Gl~G~liV~~~~~  155 (159)
T 1mzy_A          142 SGMAGCIMVLPRDG  155 (159)
T ss_dssp             TTCEEEEEEECTTC
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             14456311123457


No 37 
>>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A (A:)
Probab=90.36  E-value=0.75  Score=25.42  Aligned_cols=73  Identities=14%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             CEEEEEECCCEEEEEEEEC----CCCHHCCC---------HHHCCEECCCCCCCEEEEEEE-CCCEEEEEECCCCCCCCC
Q ss_conf             3068963698289999835----81011022---------010740311698514899994-277489666133265761
Q gi|254780474|r  165 INELVVPIDRPLEFRITAS----SVMNSFYI---------PGLAGQIYAMAGMETKLHAVM-NKKGAYSGFSANYSGRGF  230 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~----DViHSF~I---------P~l~~k~daiPG~~t~l~~~a-~~~G~y~G~cae~cG~gh  230 (332)
                      -..|.+..|..|+|.++..    .++|....         +....+.-.-||-.-+..|++ +++|+|.-.|.--|..| 
T Consensus        18 ~p~i~v~~Gd~v~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~t~~~~f~~~~~~Gt~~yhch~h~~~G-   96 (105)
T 3cvb_A           18 PANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAG-   96 (105)
T ss_dssp             SSEEEECTTEEEEEEECSSCCEEEEECTTSSGGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECTTTGGGT-
T ss_pred             CCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCC-
T ss_conf             9999993999999999999961499988965455556677756463120899759999997457884899985117789-


Q ss_pred             CCCEEEEEEC
Q ss_conf             1365899970
Q gi|254780474|r  231 SHMRFKFYGK  240 (332)
Q Consensus       231 s~M~f~v~v~  240 (332)
                        |...++|.
T Consensus        97 --M~G~i~Ve  104 (105)
T 3cvb_A           97 --MVGKITVE  104 (105)
T ss_dssp             --CEEEEEEC
T ss_pred             --CEEEEEEE
T ss_conf             --88999997


No 38 
>>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreductase; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} (A:298-490)
Probab=85.19  E-value=2.6  Score=21.56  Aligned_cols=78  Identities=6%  Similarity=-0.002  Sum_probs=59.4

Q ss_pred             CEEEEEECCCEEEEEEEECCCC--------HHCCCHHHCC-----------------------------EECCCCCCCEE
Q ss_conf             3068963698289999835810--------1102201074-----------------------------03116985148
Q gi|254780474|r  165 INELVVPIDRPLEFRITASSVM--------NSFYIPGLAG-----------------------------QIYAMAGMETK  207 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~DVi--------HSF~IP~l~~-----------------------------k~daiPG~~t~  207 (332)
                      .+-+.++.|+.|.+.++..+.+        |+|+|-..++                             -+..-||-...
T Consensus        72 ~~~~~~~~g~~v~~~~~n~~~~~Hp~HlHg~~f~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dtv~v~~g~~~~  151 (193)
T 1zpu_A           72 THTFILEKDEIVEIVLNNQDTGTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFV  151 (193)
T ss_dssp             SCEEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEE
T ss_pred             CEEEEECCCCEEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf             43599569968999994899998770856883099740587665434443335755565555699762689969998899


Q ss_pred             EEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHH
Q ss_conf             999942774896661332657611365899970889
Q gi|254780474|r  208 LHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEK  243 (332)
Q Consensus       208 l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~  243 (332)
                      +.|.|+.+|.|.--|...--.. ..|...+.+.+++
T Consensus       152 i~f~ad~pG~w~~HCHi~~H~~-~GM~~~~~v~~~~  186 (193)
T 1zpu_A          152 IRFKADNPGVWFFHCHIEWHLL-QGLGLVLVEDPFG  186 (193)
T ss_dssp             EEEECCSCEEEEEEECCHHHHH-TTCEEEEEECHHH
T ss_pred             EEEEECCCEEEEEECCCHHHHH-CCCCEEEEECCHH
T ss_conf             9999089774068148677876-8484899998323


No 39 
>>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} (A:)
Probab=85.08  E-value=2.7  Score=21.53  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=50.9

Q ss_pred             CCEEEEEECCCEEEEEEEECCC----CHHCCCHHH------CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             4306896369828999983581----011022010------740311698514899994277489666133265761136
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSV----MNSFYIPGL------AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM  233 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DV----iHSF~IP~l------~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M  233 (332)
                      .-+.|.+.+|..|+|..+...-    .|+..+|..      ......-||  .....+.+++|+|.-.|.--|..|   |
T Consensus        17 ~p~~i~v~~Gd~V~~~n~~~~~h~vh~hg~~~~~~~~g~~~~~~~~~~pg--~t~~~~f~~~G~~~yhC~~h~~~G---M   91 (98)
T 1pcs_A           17 EPSTVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAG--ESFTSTFTEPGTYTYYCEPHRGAG---M   91 (98)
T ss_dssp             ESSEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTT--CEEEEECCSCEEEEEECGGGTTTT---C
T ss_pred             ECCEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC--CEEEEEECCCEEEEEECCCCCCCC---C
T ss_conf             78999999999899978898875247703567777655545455433799--537998078847999847688999---8


Q ss_pred             EEEEEE
Q ss_conf             589997
Q gi|254780474|r  234 RFKFYG  239 (332)
Q Consensus       234 ~f~v~v  239 (332)
                      ...++|
T Consensus        92 ~G~i~V   97 (98)
T 1pcs_A           92 VGKVVV   97 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             799998


No 40 
>>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} (A:1-159)
Probab=83.77  E-value=3  Score=21.14  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=60.7

Q ss_pred             CEEEEEECCCEEEEEEEECC-CCHHCCCH--------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC---CC
Q ss_conf             30689636982899998358-10110220--------10740311698514899994277489666133265761---13
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS-VMNSFYIP--------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF---SH  232 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D-ViHSF~IP--------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh---s~  232 (332)
                      .-.+.+=.|..|+++++-+. .-|++...        .-..+....||..-...|.++++|+|.--|-..+=.++   +.
T Consensus        64 gP~i~~~~Gd~v~i~~~N~~~~~h~~~~~~~~~~~g~~~~~~~~i~PG~t~~y~f~~~~pGt~wYH~H~~~~~~~q~~~G  143 (159)
T 1oe1_A           64 GPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG  143 (159)
T ss_dssp             CCCEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred             CCEEEEECCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHCC
T ss_conf             97499979999999999089987402136278788899862367889998999997368860698624765446777504


Q ss_pred             CEEEEEECCHHH
Q ss_conf             658999708899
Q gi|254780474|r  233 MRFKFYGKSEKG  244 (332)
Q Consensus       233 M~f~v~v~s~~~  244 (332)
                      |...+++.++++
T Consensus       144 l~G~~iV~~~~~  155 (159)
T 1oe1_A          144 MSGTLMVLPRDG  155 (159)
T ss_dssp             CEEEEEEECTTC
T ss_pred             CCCCCEECCCCC
T ss_conf             544100025665


No 41 
>>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal binding protein; 1.90A {Nitrosomonas europaea} (A:131-290)
Probab=83.58  E-value=3.1  Score=21.09  Aligned_cols=75  Identities=7%  Similarity=-0.028  Sum_probs=53.1

Q ss_pred             EEEEEECCCEEEEEEEECC-CCHHCCC-------H----------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCC
Q ss_conf             0689636982899998358-1011022-------0----------10740311698514899994277489666133265
Q gi|254780474|r  166 NELVVPIDRPLEFRITASS-VMNSFYI-------P----------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSG  227 (332)
Q Consensus       166 neL~lPv~~pV~f~ltS~D-ViHSF~I-------P----------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG  227 (332)
                      +.+.+..|+.|+++++... ..|+|.|       -          .-......-||-.....+.++.+|.|.-.|...- 
T Consensus        48 ~~i~v~~G~~v~~~~~N~~~~~~~~hih~~~~~v~~~~~~~~~~~~~~dt~~i~pg~~~~~~~~~d~pG~~~~HcH~~~-  126 (160)
T 3g5w_A           48 QPIRVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDT-  126 (160)
T ss_dssp             CCEEECTTCEEEEEEEECSSSCEEEEETTSCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEESSGG-
T ss_pred             CCEEEECCCEEEEEECCCCCCEEEEEECCCEEEEEEECCEECCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEECCHH-
T ss_conf             6589827968999833588626879979957999998998856972873899899988999999699813799955777-


Q ss_pred             CCCCCCEEEEEECC
Q ss_conf             76113658999708
Q gi|254780474|r  228 RGFSHMRFKFYGKS  241 (332)
Q Consensus       228 ~ghs~M~f~v~v~s  241 (332)
                      .....|...+++.+
T Consensus       127 h~~~Gm~g~~~V~~  140 (160)
T 3g5w_A          127 HTTNGDKPDGGIMT  140 (160)
T ss_dssp             GSCBTTBSSCBSEE
T ss_pred             HHHCCCCCCCCCEE
T ss_conf             97667888887489


No 42 
>>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes} (A:132-290)
Probab=81.78  E-value=3.6  Score=20.62  Aligned_cols=74  Identities=8%  Similarity=-0.055  Sum_probs=52.3

Q ss_pred             CEEEEEECCCEEEEEEEECCCC-HHCCCH-----------------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCC
Q ss_conf             3068963698289999835810-110220-----------------1074031169851489999427748966613326
Q gi|254780474|r  165 INELVVPIDRPLEFRITASSVM-NSFYIP-----------------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYS  226 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~DVi-HSF~IP-----------------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~c  226 (332)
                      ...+.+..|+.|++++....-. |+|.+-                 ........-||-...+.++++++|.|.-.|....
T Consensus        47 ~~~~~~~~G~~v~~~~~N~~~~~~~~h~hg~~~~~~~~~~~~~~~~~~~dt~~i~pg~~~~~~~~~~~pG~~~~hch~~~  126 (159)
T 2zwn_A           47 TQPLRVKKGDVVKIRFFGAGGGIHAMHSHGHDMLVTHKDGLPLDSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHVDT  126 (159)
T ss_dssp             SCCEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEECCGG
T ss_pred             CCCEEEECCCEEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEEEECCH
T ss_conf             33379827988999885035650114607974699970895857985773899899998999999489864899980113


Q ss_pred             CCCCCCCEEEEEE
Q ss_conf             5761136589997
Q gi|254780474|r  227 GRGFSHMRFKFYG  239 (332)
Q Consensus       227 G~ghs~M~f~v~v  239 (332)
                       .....|...+.+
T Consensus       127 -h~~~Gm~~~~~v  138 (159)
T 2zwn_A          127 -HVTAGGKHPGGP  138 (159)
T ss_dssp             -GSCBTTBSSCSS
T ss_pred             -HHHCCCCCCCCC
T ss_conf             -521568778850


No 43 
>>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} (A:1-160)
Probab=80.02  E-value=4.1  Score=20.22  Aligned_cols=81  Identities=12%  Similarity=-0.036  Sum_probs=62.2

Q ss_pred             CCCEEEEEECCCEEEEEEEEC----CCCHHC-----CCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCC--CC
Q ss_conf             743068963698289999835----810110-----2201074031169851489999427748966613326576--11
Q gi|254780474|r  163 AIINELVVPIDRPLEFRITAS----SVMNSF-----YIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRG--FS  231 (332)
Q Consensus       163 atvneL~lPv~~pV~f~ltS~----DViHSF-----~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~g--hs  231 (332)
                      ..-..|.+-.|..|+++++-.    +.+|-.     ....-..+....||..-...|.++++|+|.--|.-.|=..  .+
T Consensus        67 ~pgP~i~~~~Gd~v~i~~~N~~~~~~~~H~hg~~~~~~~~g~~~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~~  146 (160)
T 1kbv_A           67 VPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIAN  146 (160)
T ss_dssp             SSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred             CCCCEEEEECCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHH
T ss_conf             68961999779999999998998862452402067888998741568799859999987798067883455665777753


Q ss_pred             CCEEEEEECCHH
Q ss_conf             365899970889
Q gi|254780474|r  232 HMRFKFYGKSEK  243 (332)
Q Consensus       232 ~M~f~v~v~s~~  243 (332)
                      .|..-+++.+++
T Consensus       147 Gl~G~~iV~~~~  158 (160)
T 1kbv_A          147 GMYGLILVEPKE  158 (160)
T ss_dssp             TCEEEEEEECTT
T ss_pred             HCCCCEEECCCC
T ss_conf             024302506844


No 44 
>>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} (A:)
Probab=79.83  E-value=4.1  Score=20.18  Aligned_cols=74  Identities=9%  Similarity=-0.019  Sum_probs=50.1

Q ss_pred             CCEEEEEECCCEEEEEEEECCC-CHHCCC-----HH----------------------------HCCEECCCCCCCEEEE
Q ss_conf             4306896369828999983581-011022-----01----------------------------0740311698514899
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSV-MNSFYI-----PG----------------------------LAGQIYAMAGMETKLH  209 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DV-iHSF~I-----P~----------------------------l~~k~daiPG~~t~l~  209 (332)
                      ..+-+++..|+.|++.++..+- -|.|-+     ..                            ++--+..-||-...+.
T Consensus        17 ~~~~~~~~~G~~v~~~l~N~~~~~h~~h~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~~v~pg~~~~~~   96 (129)
T 2ccw_A           17 VKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVT   96 (129)
T ss_dssp             CSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEE
T ss_pred             CCEEEEECCCCEEEEEEEECCCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             65589915998999999918968510154053214750189999999751110366798862100213221788437999


Q ss_pred             EEE---CCCEEEEEECCCCCCCCCC-CCEEEEEEC
Q ss_conf             994---2774896661332657611-365899970
Q gi|254780474|r  210 AVM---NKKGAYSGFSANYSGRGFS-HMRFKFYGK  240 (332)
Q Consensus       210 ~~a---~~~G~y~G~cae~cG~ghs-~M~f~v~v~  240 (332)
                      +++   +.+|+|.--|.-.   +|. .|...+.|.
T Consensus        97 f~~~~~~~pG~~~~HCHi~---~H~~GM~g~i~V~  128 (129)
T 2ccw_A           97 FDVSKIAAGENYAYFCSFP---GHWAMMKGTLKLG  128 (129)
T ss_dssp             EEGGGSCTTCCEEEECCST---TGGGTSEEEEEEC
T ss_pred             EEECCCCCCCEEEEEECCC---CCCCCCEEEEEEC
T ss_conf             9834668896199996999---8000837899975


No 45 
>>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} (A:907-1065)
Probab=78.78  E-value=4.4  Score=19.96  Aligned_cols=79  Identities=6%  Similarity=0.048  Sum_probs=56.8

Q ss_pred             CEEEEEECCCEEEEEEEECC-CCHHCCC-------------HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf             30689636982899998358-1011022-------------010740311698514899994277489666133265761
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS-VMNSFYI-------------PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF  230 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D-ViHSF~I-------------P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh  230 (332)
                      ...+.+..|..|++.++... ..|+|-+             |...-.+-.-||-...+++.++.+|+|.--|--.. --.
T Consensus        63 ~~~~~v~~g~~v~~~i~N~~~~~~~~h~hg~~~~~~~~~~~~~~~dtv~i~pg~~~~~~~~~~~~G~~~~HCH~~~-H~~  141 (159)
T 2j5w_A           63 LQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTD-HIH  141 (159)
T ss_dssp             CCCCEEETTCEEEEEEEECCSTTCCEEEEESSCCEEETTTTCEEESEEEECTTCEEEEEECCCSCEEEEEEECCHH-HHH
T ss_pred             CCCEEECCCCEEEEEEEECCCCCCCCCEEECCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCHH-HHH
T ss_conf             8866963899899999979999899892876705598489997442899899977999999489887688528888-986


Q ss_pred             CCCEEEEEECCHHH
Q ss_conf             13658999708899
Q gi|254780474|r  231 SHMRFKFYGKSEKG  244 (332)
Q Consensus       231 s~M~f~v~v~s~~~  244 (332)
                      ..|...+++.++++
T Consensus       142 ~GM~g~~~V~~~~~  155 (159)
T 2j5w_A          142 AGMETTYTVLQNED  155 (159)
T ss_dssp             TTCEEEEEEECCC-
T ss_pred             CCCCEEEEEECCCC
T ss_conf             55854999972898


No 46 
>>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} (A:181-306)
Probab=77.76  E-value=0.37  Score=27.58  Aligned_cols=79  Identities=10%  Similarity=0.020  Sum_probs=55.9

Q ss_pred             CEEEEEECCCEEEEEEEECC-CCH-------HCCCHHHCCEEC---CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             30689636982899998358-101-------102201074031---1698514899994277489666133265761136
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS-VMN-------SFYIPGLAGQIY---AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM  233 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D-ViH-------SF~IP~l~~k~d---aiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M  233 (332)
                      ...+.++.|..|++.++... .-|       .+..+.-+...|   .-||-.....|+++++|+|.--|.- ++.--+.|
T Consensus        34 ~p~i~~~~Gd~v~~~v~N~~~~~~~~~ih~~g~~~~~~~~~~~~~~i~pg~~~~~~f~~~~~G~~~yHch~-~~H~~~Gm  112 (126)
T 1sdd_A           34 MPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASLI-PRHFQAGM  112 (126)
T ss_dssp             CCCCCCCCC------BBCCCSSSCEECCBCSSTTCEETTEECSCCCEETTCCBC--------CCCCCBCCS-TTTGGGTC
T ss_pred             CCCEEEECCCEEEEEEEECCCCCCCEEEEECCCEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEECCC-HHHHHCCC
T ss_conf             77707946998999999527764421598558589978953108998998289999998998899997587-78987689


Q ss_pred             EEEEEECCHHH
Q ss_conf             58999708899
Q gi|254780474|r  234 RFKFYGKSEKG  244 (332)
Q Consensus       234 ~f~v~v~s~~~  244 (332)
                      ...++|.++++
T Consensus       113 ~g~~~V~~~~~  123 (126)
T 1sdd_A          113 QAYIDIKNCAK  123 (126)
T ss_dssp             BCCC-------
T ss_pred             EEEEEEEECCC
T ss_conf             69999810888


No 47 
>>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} (A:137-305)
Probab=76.33  E-value=5.1  Score=19.49  Aligned_cols=65  Identities=18%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             CEEEEEECCCEEEEEEEECCCCH--HCCCHHHCCEEC----------------CCCCCCEEEEEEECC-CEEEEEECCCC
Q ss_conf             30689636982899998358101--102201074031----------------169851489999427-74896661332
Q gi|254780474|r  165 INELVVPIDRPLEFRITASSVMN--SFYIPGLAGQIY----------------AMAGMETKLHAVMNK-KGAYSGFSANY  225 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~DViH--SF~IP~l~~k~d----------------aiPG~~t~l~~~a~~-~G~y~G~cae~  225 (332)
                      ...+.+..|+.++|+|-.....+  .|.|.....++-                .-||.+-.+-+++++ +|.|...|.-+
T Consensus        48 ~~~i~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~v~p~~~d~i~i~pGqR~dv~v~~~~~~g~y~i~~~~~  127 (169)
T 1hfu_A           48 LSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPN  127 (169)
T ss_dssp             CCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEEEEES
T ss_pred             CCEEEEECCCEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEEEECC
T ss_conf             83699843868999885377743789996687247993388426753222699616659999998458997189998426


Q ss_pred             CCCC
Q ss_conf             6576
Q gi|254780474|r  226 SGRG  229 (332)
Q Consensus       226 cG~g  229 (332)
                      -...
T Consensus       128 ~~~~  131 (169)
T 1hfu_A          128 KGRN  131 (169)
T ss_dssp             SCGG
T ss_pred             CCCC
T ss_conf             8864


No 48 
>>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} (A:)
Probab=75.07  E-value=5.5  Score=19.27  Aligned_cols=73  Identities=15%  Similarity=0.031  Sum_probs=49.5

Q ss_pred             CCEEEEEECCCEEEEEEEECCC------CHHCCCHHH----------------------------CCEECCCCCCCEEEE
Q ss_conf             4306896369828999983581------011022010----------------------------740311698514899
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSV------MNSFYIPGL----------------------------AGQIYAMAGMETKLH  209 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DV------iHSF~IP~l----------------------------~~k~daiPG~~t~l~  209 (332)
                      ..+-++.+.|+.|++.|.+.+.      +|.|-+...                            +--...-||-...+.
T Consensus        17 p~~~~~~~~G~~v~i~l~N~~~~~H~~h~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~pG~~~~~~   96 (128)
T 1nwp_A           17 TKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSVT   96 (128)
T ss_dssp             CSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEEE
T ss_pred             CCEEEEECCCCEEEEEEECCCCCCEEEEEECHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf             65799946995899999868977402776150002613579999998763001478998873124774000689825899


Q ss_pred             EEE---CCCEEEEEECCCCCCCCC-CCCEEEEEE
Q ss_conf             994---277489666133265761-136589997
Q gi|254780474|r  210 AVM---NKKGAYSGFSANYSGRGF-SHMRFKFYG  239 (332)
Q Consensus       210 ~~a---~~~G~y~G~cae~cG~gh-s~M~f~v~v  239 (332)
                      |++   +.||+|.-.|.-.   +| +.|...++|
T Consensus        97 f~~~~~~~pG~~~yhChi~---~H~~GM~g~i~V  127 (128)
T 1nwp_A           97 FDVSKLAAGEKYGFFCSFP---GHISMMKGTVTL  127 (128)
T ss_dssp             EEGGGSCTTSCEEEECCST---TCGGGSEEEEEE
T ss_pred             EEECCCCCCCCEEEEECCC---CHHHCCEEEEEE
T ss_conf             9802688898489997889---933576699998


No 49 
>>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* (A:565-742)
Probab=74.65  E-value=1.8  Score=22.81  Aligned_cols=78  Identities=10%  Similarity=-0.083  Sum_probs=57.9

Q ss_pred             CEEEEEECCCEEEEEEEECCC--------CHHCCCHHHCCEEC---CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             306896369828999983581--------01102201074031---1698514899994277489666133265761136
Q gi|254780474|r  165 INELVVPIDRPLEFRITASSV--------MNSFYIPGLAGQIY---AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM  233 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~DV--------iHSF~IP~l~~k~d---aiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M  233 (332)
                      .+.+.+..|..|+++++....        +|.+..+..+...+   ..||-...+.|+|+++|.|.--|-..+ --.+.|
T Consensus        61 ~p~i~v~~g~~v~i~l~N~~~~~~~h~iH~HG~~~~~~~~~~~~~~~~pg~~~~~~f~ad~pG~~~~HCH~~~-H~~~GM  139 (178)
T 2r7e_A           61 SLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGETVFMSMENPGLWILGCHNSD-FRNRGM  139 (178)
T ss_dssp             CCCCCCCSSCCCEEEEEECSSCCCCCCCEESSSCCCCBSSSBCSSCCCCCSSEECCEECCCCCCSCCEECCCS-TTHHHH
T ss_pred             CCCEEECCCCEEEEEEECCCCCCCCCCEEECCCEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEEEECCHH-HHHCCC
T ss_conf             8764846999899999808888888886888815587489888799799988999998899986799838888-997469


Q ss_pred             EEEEEECCHH
Q ss_conf             5899970889
Q gi|254780474|r  234 RFKFYGKSEK  243 (332)
Q Consensus       234 ~f~v~v~s~~  243 (332)
                      ...+++.+++
T Consensus       140 ~~~~~V~~~~  149 (178)
T 2r7e_A          140 TALLKVSSCD  149 (178)
T ss_dssp             SCCCCCCCCC
T ss_pred             CEEEEEECCC
T ss_conf             4499994487


No 50 
>>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* (A:189-354)
Probab=74.07  E-value=5.3  Score=19.37  Aligned_cols=77  Identities=9%  Similarity=-0.022  Sum_probs=57.1

Q ss_pred             EEEEEECCCEEEEEEEECC-C--CHHC--------CCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCE
Q ss_conf             0689636982899998358-1--0110--------220107403116985148999942774896661332657611365
Q gi|254780474|r  166 NELVVPIDRPLEFRITASS-V--MNSF--------YIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMR  234 (332)
Q Consensus       166 neL~lPv~~pV~f~ltS~D-V--iHSF--------~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~  234 (332)
                      ..+.+..|..|+++++... .  .|++        ..+....+...-||..-...+.|+++|+|.-.|--.. .-.+.|.
T Consensus        56 p~~~~~~gd~v~i~l~N~~~~~~~~~iH~Hg~~~~~~~~~~~~~~i~pg~~~~~~~~a~~~G~~~yHcH~~~-H~~~Gm~  134 (166)
T 2r7e_A           56 PGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASLEISPITFLTAQTLLMDLGQFLLFCHISS-HQHDGME  134 (166)
T ss_dssp             CCCEECSSSCEEEECCCCCSSSCCCCCCCTTCCCEETTEECCSCCCCTTCCCEEEECCCSCSEECCCCCSSS-SSTTSCC
T ss_pred             CCEEECCCCEEEEEEEECCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEEECC-CCCCCCE
T ss_conf             864665799899998606788774257706978999667154110111211478999840673566654244-2014850


Q ss_pred             EEEEECCHH
Q ss_conf             899970889
Q gi|254780474|r  235 FKFYGKSEK  243 (332)
Q Consensus       235 f~v~v~s~~  243 (332)
                      ..++|.+++
T Consensus       135 g~~~V~~~~  143 (166)
T 2r7e_A          135 AYVKVDSCP  143 (166)
T ss_dssp             BCEEECCCC
T ss_pred             EEEEECCCC
T ss_conf             799862577


No 51 
>>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, metal-binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis TAC125} (A:1-149)
Probab=68.48  E-value=7.7  Score=18.25  Aligned_cols=80  Identities=13%  Similarity=0.010  Sum_probs=59.4

Q ss_pred             CCEEEEEECCCEEEEEEEECC-CCHH---CCCH-----HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCC--CCC
Q ss_conf             430689636982899998358-1011---0220-----1074031169851489999427748966613326576--113
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASS-VMNS---FYIP-----GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRG--FSH  232 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~D-ViHS---F~IP-----~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~g--hs~  232 (332)
                      --.-+.+-.|..|+++++.+. .-|+   -..+     .-..+....||-.-...|.++++|+|.--|.-.+=.-  -+.
T Consensus        58 pgp~i~v~~Gd~v~i~~~N~~~~~~~~h~h~~~~~~~~~~~~~~~i~pg~~~~y~f~~~~~Gt~wYH~H~~~~~~q~~~G  137 (149)
T 2zoo_A           58 PGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGGGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG  137 (149)
T ss_dssp             SCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred             CCCEEEEECCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHC
T ss_conf             58639997598999999989998530347868866799876628637998388999779997999972787658888606


Q ss_pred             CEEEEEECCHH
Q ss_conf             65899970889
Q gi|254780474|r  233 MRFKFYGKSEK  243 (332)
Q Consensus       233 M~f~v~v~s~~  243 (332)
                      |..-+++.++|
T Consensus       138 l~G~liV~~~~  148 (149)
T 2zoo_A          138 MYGLILVEPKE  148 (149)
T ss_dssp             CEEEEEEECTT
T ss_pred             CCCEEECCCCC
T ss_conf             44354126887


No 52 
>>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} (A:160-336)
Probab=68.37  E-value=7.7  Score=18.24  Aligned_cols=81  Identities=9%  Similarity=-0.058  Sum_probs=54.9

Q ss_pred             CCCEEEEEECCCEEEEEEEECCCCHHC-------CCHHHCC-----------EECCCCCCCEEEEEEECCCEEEEEECCC
Q ss_conf             743068963698289999835810110-------2201074-----------0311698514899994277489666133
Q gi|254780474|r  163 AIINELVVPIDRPLEFRITASSVMNSF-------YIPGLAG-----------QIYAMAGMETKLHAVMNKKGAYSGFSAN  224 (332)
Q Consensus       163 atvneL~lPv~~pV~f~ltS~DViHSF-------~IP~l~~-----------k~daiPG~~t~l~~~a~~~G~y~G~cae  224 (332)
                      .....+.+-.+..|++...+.+--|.|       ++...++           -+..-||-...+.++|+.||+|.--|-.
T Consensus        63 ~~~~~~~~~~~~~v~~~~~~~~~~~~~h~hg~~f~~~~~~g~~~~~~~~~~dt~~v~~~~~~~i~~~adnPG~w~~HCH~  142 (177)
T 1oe1_A           63 TGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHN  142 (177)
T ss_dssp             SGGGCEEEETTCEEEEEEEESSSCBCEEETTCCEEEEETTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESS
T ss_pred             CCCCEEEEEECCEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCC
T ss_conf             99714678718879999975877657189688647998688316887557349998998179999988998388998682


Q ss_pred             CCCCCCCCCEEEEEECCHH
Q ss_conf             2657611365899970889
Q gi|254780474|r  225 YSGRGFSHMRFKFYGKSEK  243 (332)
Q Consensus       225 ~cG~ghs~M~f~v~v~s~~  243 (332)
                      ..=.-...|...+++..++
T Consensus       143 ~~~H~~~GM~~~~~v~~~~  161 (177)
T 1oe1_A          143 LIEAFELGAAGHIKVEGKW  161 (177)
T ss_dssp             HHHHHTTSCEEEEEEESCC
T ss_pred             HHHHHHCCCEEEEEEECCC
T ss_conf             6678754886999997888


No 53 
>>1gsk_A COTA, spore coat protein A; sporulation, laccase; 1.7A {Bacillus subtilis} (A:354-513)
Probab=67.32  E-value=8.1  Score=18.10  Aligned_cols=80  Identities=14%  Similarity=-0.029  Sum_probs=55.6

Q ss_pred             CCEEEEEECCCEEEEEEEECCC-C-------HHCCCHH------------------------------HCCEECCCCCCC
Q ss_conf             4306896369828999983581-0-------1102201------------------------------074031169851
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSV-M-------NSFYIPG------------------------------LAGQIYAMAGME  205 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DV-i-------HSF~IP~------------------------------l~~k~daiPG~~  205 (332)
                      ..+.+.++.|+.|++.|.+.+- .       |+|+|.+                              ++--+..-||-.
T Consensus        42 ~~~~~~~~~g~~v~~~l~N~~~~~hp~HlHg~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rDtv~i~p~~~  121 (160)
T 1gsk_A           42 DPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEV  121 (160)
T ss_dssp             SCCCBCCBTTCEEEEEEEECSSSCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEE
T ss_pred             CCCCCEECCCCEEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCE
T ss_conf             87652468998899999959989879916797289986558766664563211345766667766788752899699997


Q ss_pred             EEEEEE-ECCCEEEEEECCCCCCCCCCCCEEEEEECCHHH
Q ss_conf             489999-427748966613326576113658999708899
Q gi|254780474|r  206 TKLHAV-MNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKG  244 (332)
Q Consensus       206 t~l~~~-a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~  244 (332)
                      ..+.+. ++.+|.|.--|...-= --..|...+.+.++++
T Consensus       122 ~~i~~~~~d~pG~~~~HCHi~~H-~~~Gm~~~~~V~~~~~  160 (160)
T 1gsk_A          122 LRIAATFGPYSGRYVWHCHILEH-EDYDMMRPMDITDPHK  160 (160)
T ss_dssp             EEEEEECCSCCEEEEEEESCHHH-HTTTCEEEEEEBC---
T ss_pred             EEEEEEECCCCCCEEECCCCHHH-HHCCCCCEEEEECCCC
T ss_conf             99999969999426991687788-8654866059718899


No 54 
>>2cal_A Rusticyanin; iron respiratory electron transport chain, blue copper protein, copper, electron transport, metal- binding, periplasmic; 1.1A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A (A:)
Probab=65.17  E-value=8.8  Score=17.81  Aligned_cols=73  Identities=10%  Similarity=-0.010  Sum_probs=53.2

Q ss_pred             EEEEEECCCEEEEEEEECCC-C--------HHCCCHHH-----------CCEECCCCCCCEEEEEEECCCEEEEEECCCC
Q ss_conf             06896369828999983581-0--------11022010-----------7403116985148999942774896661332
Q gi|254780474|r  166 NELVVPIDRPLEFRITASSV-M--------NSFYIPGL-----------AGQIYAMAGMETKLHAVMNKKGAYSGFSANY  225 (332)
Q Consensus       166 neL~lPv~~pV~f~ltS~DV-i--------HSF~IP~l-----------~~k~daiPG~~t~l~~~a~~~G~y~G~cae~  225 (332)
                      ..+.+..|..|++.++-.+- .        |.|.++..           .-....-||...+..|+++++|+|.-.|.-.
T Consensus        61 p~i~v~~Gd~v~~~~~N~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~~~f~~~~pGt~~yHcH~~  140 (154)
T 2cal_A           61 PTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIP  140 (154)
T ss_dssp             CEEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEECCST
T ss_pred             CEEEEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCEEEEEECCCC
T ss_conf             84998599999999991998764514525057763335666666776640124269985899998579996799968971


Q ss_pred             CCCCCCCCEEEEEE
Q ss_conf             65761136589997
Q gi|254780474|r  226 SGRGFSHMRFKFYG  239 (332)
Q Consensus       226 cG~ghs~M~f~v~v  239 (332)
                       |--.+.|...++|
T Consensus       141 -~H~~~GM~G~~~V  153 (154)
T 2cal_A          141 -GMAATGMFGKIVV  153 (154)
T ss_dssp             -TTGGGTCEEEEEE
T ss_pred             -CHHHCCCEEEEEE
T ss_conf             -1776788799998


No 55 
>>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* (B:305-458)
Probab=64.79  E-value=3  Score=21.14  Aligned_cols=67  Identities=10%  Similarity=0.058  Sum_probs=48.5

Q ss_pred             CEEEEEECCCEEEEEEEECCC---CHHCCCH-----------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf             306896369828999983581---0110220-----------10740311698514899994277489666133265761
Q gi|254780474|r  165 INELVVPIDRPLEFRITASSV---MNSFYIP-----------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF  230 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~DV---iHSF~IP-----------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh  230 (332)
                      ...+.++.|..|+++|....-   -|+|-.-           .....+..-||-...+.+.|+.+|+|.-.|--.+=...
T Consensus        63 ~~~~~~~~g~~v~~~l~N~~~~~~~~~iH~h~~~f~~~~~~~~~~d~~~i~pg~~~~i~~~a~~pG~~~~HCHi~~H~~~  142 (154)
T 2r7e_B           63 LPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHA  142 (154)
T ss_dssp             CCCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCCEESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHHTT
T ss_pred             CCCEEECCCCEEEEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCHHHHHC
T ss_conf             99637738998999999798998864739858689995579971104998999689999998999889997188479728


Q ss_pred             C
Q ss_conf             1
Q gi|254780474|r  231 S  231 (332)
Q Consensus       231 s  231 (332)
                      .
T Consensus       143 G  143 (154)
T 2r7e_B          143 G  143 (154)
T ss_dssp             B
T ss_pred             C
T ss_conf             4


No 56 
>>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} (A:)
Probab=64.18  E-value=8  Score=18.11  Aligned_cols=90  Identities=9%  Similarity=0.004  Sum_probs=60.7

Q ss_pred             CCEEEEEECCCEEEEEEEEC--CCCHH-CCCHHHCC-EECCCCCCC--EEEEEEECCCEEEEEECC--CCCCCCCCCCEE
Q ss_conf             43068963698289999835--81011-02201074-031169851--489999427748966613--326576113658
Q gi|254780474|r  164 IINELVVPIDRPLEFRITAS--SVMNS-FYIPGLAG-QIYAMAGME--TKLHAVMNKKGAYSGFSA--NYSGRGFSHMRF  235 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~--DViHS-F~IP~l~~-k~daiPG~~--t~l~~~a~~~G~y~G~ca--e~cG~ghs~M~f  235 (332)
                      ..+...+-+|--+.|+..+.  +|..+ |--|=-.. .-+.+.+..  ....++.+++|.|+-.|+  ..|+.|   |++
T Consensus        26 w~~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~~~~c~~~~~~~~~~~~g~~~v~l~~~g~~yF~c~~~~hC~~G---mk~  102 (138)
T 1jer_A           26 WAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNG---QKL  102 (138)
T ss_dssp             HHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECCSSEEEEEECCSTTTGGGT---CEE
T ss_pred             HHCCCCEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCC---CEE
T ss_conf             03479584799999996899801898767224544766886651036886688734785279866887832079---989


Q ss_pred             EEEECCHHHHHHHHHHHHCCC
Q ss_conf             999708899999999986072
Q gi|254780474|r  236 KFYGKSEKGFEDWISKVKRQG  256 (332)
Q Consensus       236 ~v~v~s~~~f~~Wv~~~ka~~  256 (332)
                      .+.+.+............+..
T Consensus       103 ~I~v~~~~~~~~~~~~~~~~~  123 (138)
T 1jer_A          103 SINVVAANATVSMPPPSSSPP  123 (138)
T ss_dssp             EEEEECCC-------------
T ss_pred             EEEECCCCCCCCCCCCCCCCC
T ss_conf             999758998788888888998


No 57 
>>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} (A:161-327)
Probab=62.37  E-value=9.9  Score=17.47  Aligned_cols=78  Identities=10%  Similarity=-0.023  Sum_probs=51.4

Q ss_pred             CCEEEEEECCCEEEEEEEEC--CCCHHC-------CC---------HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCC
Q ss_conf             43068963698289999835--810110-------22---------0107403116985148999942774896661332
Q gi|254780474|r  164 IINELVVPIDRPLEFRITAS--SVMNSF-------YI---------PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANY  225 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~--DViHSF-------~I---------P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~  225 (332)
                      ..+.+.+..+..|++.+..+  +-.|.|       ++         |...--+..-||-...+.++++.||.|.--|...
T Consensus        52 ~~~~~~~~~g~~v~~~~~n~~~~~~hp~H~Hg~~f~vv~~~~~~~~~~~~dtv~i~~g~~~~i~~~ad~pG~w~~HCH~~  131 (167)
T 1kbv_A           52 GDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSI  131 (167)
T ss_dssp             GGGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCEECSBSEEEECTTEEEEEEEEECSCEEEEEEESST
T ss_pred             CCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCC
T ss_conf             87524780188998989727764001589769608999948954689973499989886899999979993128991453


Q ss_pred             CCCCCCCCEEEEEECC
Q ss_conf             6576113658999708
Q gi|254780474|r  226 SGRGFSHMRFKFYGKS  241 (332)
Q Consensus       226 cG~ghs~M~f~v~v~s  241 (332)
                      -=.--..|...+.+..
T Consensus       132 ~h~~~~Gm~~~~~v~~  147 (167)
T 1kbv_A          132 FRAFNKGALGQLKVEG  147 (167)
T ss_dssp             HHHHHSSCEEEEEEES
T ss_pred             HHHHCCCCEEEEEECC
T ss_conf             3331635389999936


No 58 
>>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* (C:)
Probab=58.48  E-value=11  Score=17.01  Aligned_cols=73  Identities=10%  Similarity=-0.006  Sum_probs=49.0

Q ss_pred             CEEEEEECCCEEEEEEEECCC------CHHCCCHH-----------------------HC-----CEECCCCCCCEEEEE
Q ss_conf             306896369828999983581------01102201-----------------------07-----403116985148999
Q gi|254780474|r  165 INELVVPIDRPLEFRITASSV------MNSFYIPG-----------------------LA-----GQIYAMAGMETKLHA  210 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~DV------iHSF~IP~-----------------------l~-----~k~daiPG~~t~l~~  210 (332)
                      .+-++++.|..|++.+...+-      .|.|-+..                       ..     .-...-||-...+.+
T Consensus        17 ~~~~~~~~G~~v~~~~~N~~~~~h~~h~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~pG~~~~~~~   96 (128)
T 2iaa_C           17 KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSVTF   96 (128)
T ss_dssp             SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEE
T ss_pred             CEEEEECCCCEEEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCEEEEEEEECCCCCEEEEE
T ss_conf             66999369989999997588775212533530268732789999987541310679887642255512416996169999


Q ss_pred             EE---CCCEEEEEECCCCCCCCC-CCCEEEEEEC
Q ss_conf             94---277489666133265761-1365899970
Q gi|254780474|r  211 VM---NKKGAYSGFSANYSGRGF-SHMRFKFYGK  240 (332)
Q Consensus       211 ~a---~~~G~y~G~cae~cG~gh-s~M~f~v~v~  240 (332)
                      ++   +.+|+|.-.|.-.   +| +.|...++|.
T Consensus        97 ~~~~~~~pG~~~~HChi~---~H~~GM~g~i~V~  127 (128)
T 2iaa_C           97 DVSKLKEGEDYAFFCSFP---GHWSIMKGTIELG  127 (128)
T ss_dssp             ESSCCCTTCCEEEECCST---TCTTTSEEEEEEC
T ss_pred             EEECCCCCCEEEEEECCC---CCCCCCEEEEEEC
T ss_conf             967157896099997999---9111847899975


No 59 
>>2uxt_A Protein SUFI, SUFI; periplasmic, cupredoxin-like, FTS mutant suppressor, oxidoreductase; 1.9A {Escherichia coli} PDB: 2uxv_A (A:313-451)
Probab=58.45  E-value=11  Score=17.16  Aligned_cols=79  Identities=8%  Similarity=-0.065  Sum_probs=53.5

Q ss_pred             CEEEEEECCCEEEEEEEECC--CC----HHCCC------------HHHCCEECCCCCCCEEEE--EEECCCEEEEEECCC
Q ss_conf             30689636982899998358--10----11022------------010740311698514899--994277489666133
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS--VM----NSFYI------------PGLAGQIYAMAGMETKLH--AVMNKKGAYSGFSAN  224 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D--Vi----HSF~I------------P~l~~k~daiPG~~t~l~--~~a~~~G~y~G~cae  224 (332)
                      ...+.+..|..|++.+....  .+    |.|.+            |..+......||-...+.  +.++.+|+|.-.|-.
T Consensus        34 ~p~i~~~~Gd~v~~~~~N~~~hp~hlHg~~f~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~~~~~~a~~~G~~~~HcHi  113 (139)
T 2uxt_A           34 RIDVTAQQGTWERWTVRADEPQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNSQT  113 (139)
T ss_dssp             CCCEEEETTCEEEEEEEEEEEEEEEETTCEEEEEEETTBCCCGGGSSCBSEEEEEEEEEEEEECCSCCBTTBCEEEEESS
T ss_pred             CCCEEECCCCEEEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCEEEEECCH
T ss_conf             63157258978999996899868728896699995579768877777677689099889999997978988658993782


Q ss_pred             CCCCCCCCCEEEEEECCHHH
Q ss_conf             26576113658999708899
Q gi|254780474|r  225 YSGRGFSHMRFKFYGKSEKG  244 (332)
Q Consensus       225 ~cG~ghs~M~f~v~v~s~~~  244 (332)
                      .- -....|...+.|..+++
T Consensus       114 ~~-H~~~Gm~g~~~V~~~~~  132 (139)
T 2uxt_A          114 LE-MADRGSIGQLLVNPVPR  132 (139)
T ss_dssp             HH-HHHTTCEEEEEEECSCC
T ss_pred             HH-HHHCCCCEEEEEECCCC
T ss_conf             78-87576856699945997


No 60 
>>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} (A:404-418,A:574-723)
Probab=58.01  E-value=12  Score=16.96  Aligned_cols=76  Identities=8%  Similarity=0.006  Sum_probs=53.3

Q ss_pred             CCEEEEEECCCEEEEEEEECC---CCHHC-------CC-HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf             430689636982899998358---10110-------22-01074031169851489999427748966613326576113
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASS---VMNSF-------YI-PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH  232 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~D---ViHSF-------~I-P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~  232 (332)
                      ....+.+..|+.+++.+.+..   -.|.|       +| |.-+--+..-||....+.+.++.||.|.--|--.-= -.+.
T Consensus        72 ~~~~~~~~~~~~~~~~i~n~~~~~~~HP~HlHG~~f~v~~~~~DTv~v~pg~~~~i~f~~dnpG~W~~HCHi~~H-~~~G  150 (165)
T 2j5w_A           72 NQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDH-YTGG  150 (165)
T ss_dssp             CCCCCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEECTTCEEEEEECCCSCEEEEEEECSHHH-HHTT
T ss_pred             CCCCCEECCCCEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEEECCCC-CCCC
T ss_conf             888626737988999997488877502489816057832300673776588417999995478852678732433-2588


Q ss_pred             CEEEEEEC
Q ss_conf             65899970
Q gi|254780474|r  233 MRFKFYGK  240 (332)
Q Consensus       233 M~f~v~v~  240 (332)
                      |...+.|.
T Consensus       151 M~~~~~v~  158 (165)
T 2j5w_A          151 MKQKYTVN  158 (165)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
T ss_conf             43899980


No 61 
>>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} (A:1-165)
Probab=55.23  E-value=13  Score=16.65  Aligned_cols=80  Identities=19%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             CCEEEEEECCCEEEEEEEECC-C---CHHCCC-----HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC---C
Q ss_conf             430689636982899998358-1---011022-----010740311698514899994277489666133265761---1
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASS-V---MNSFYI-----PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF---S  231 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~D-V---iHSF~I-----P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh---s  231 (332)
                      --..+++=.|..|+++++... .   +|.+-+     +.-..+.-..||-+-...|.++++|+|.--|-..|-..+   +
T Consensus        69 pgP~i~v~~Gd~v~i~l~N~~~~~~~~h~hg~~~~~~~~~~~~~~i~pg~t~~y~f~~~qpGt~wYH~H~~~~t~~q~~~  148 (165)
T 2bw4_A           69 PGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS  148 (165)
T ss_dssp             SCCEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred             CCCEEEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHCC
T ss_conf             79759998894999999968988613678868878889987533178999899999867864346882465530332213


Q ss_pred             CCEEEEEECCHH
Q ss_conf             365899970889
Q gi|254780474|r  232 HMRFKFYGKSEK  243 (332)
Q Consensus       232 ~M~f~v~v~s~~  243 (332)
                      .|..-.++.+++
T Consensus       149 Gl~G~~iV~~~~  160 (165)
T 2bw4_A          149 GMNGAIMVLPRD  160 (165)
T ss_dssp             TCEEEEEEECTB
T ss_pred             CCCCCCCCCCCC
T ss_conf             101211224566


No 62 
>>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} (A:147-285)
Probab=53.52  E-value=14  Score=16.46  Aligned_cols=83  Identities=17%  Similarity=-0.018  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEECCCEEEEEEEECCC----CH-----HCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC-
Q ss_conf             8774306896369828999983581----01-----1022010740311698514899994277489666133265761-
Q gi|254780474|r  161 QVAIINELVVPIDRPLEFRITASSV----MN-----SFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF-  230 (332)
Q Consensus       161 giatvneL~lPv~~pV~f~ltS~DV----iH-----SF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh-  230 (332)
                      |..--..+.+-.|..|+++++.+.-    +|     +-+.+.-..+...-||..-...|.++++|+|.--|...|=.-| 
T Consensus        44 g~~pgP~i~~~~Gd~v~i~l~N~~~~~~~~h~h~~~~~~~~~~~~~~~v~Pg~~~~y~f~~~~~Gt~wYH~H~~~~~~~~  123 (139)
T 2dv6_A           44 GKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATGPGGAAAFTQTDPGEETVVTFKALIPGIYVYHCATPSVPTHI  123 (139)
T ss_dssp             TBBSCCCEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGGGGCCBCTTCEEEEEEECCSCEEEEEECCSSSHHHHH
T ss_pred             CCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEE
T ss_conf             99899769998798998998604898644420247864689889754318997178999775681576774578874216


Q ss_pred             -CCCEEEEEECCHH
Q ss_conf             -1365899970889
Q gi|254780474|r  231 -SHMRFKFYGKSEK  243 (332)
Q Consensus       231 -s~M~f~v~v~s~~  243 (332)
                       +.|....++.+++
T Consensus       124 ~~Gl~G~liV~~~~  137 (139)
T 2dv6_A          124 TNGMYGLLLVEPEG  137 (139)
T ss_dssp             HTTCEEEEEEECTT
T ss_pred             ECCEEEEEECCCCC
T ss_conf             45303156603457


No 63 
>>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} (A:129-310)
Probab=53.18  E-value=14  Score=16.42  Aligned_cols=64  Identities=9%  Similarity=0.019  Sum_probs=46.2

Q ss_pred             EEEEEECCCEEEEEEEECCC--CHHCCCHHHCCEE----------------CCCCCCCEEEEEEECCCEEE--EEECCCC
Q ss_conf             06896369828999983581--0110220107403----------------11698514899994277489--6661332
Q gi|254780474|r  166 NELVVPIDRPLEFRITASSV--MNSFYIPGLAGQI----------------YAMAGMETKLHAVMNKKGAY--SGFSANY  225 (332)
Q Consensus       166 neL~lPv~~pV~f~ltS~DV--iHSF~IP~l~~k~----------------daiPG~~t~l~~~a~~~G~y--~G~cae~  225 (332)
                      -.+.+..|+.++|+|.....  .|.|.|..-..++                ..-||.+-.+-++++++|..  .-.-...
T Consensus        76 ~~~~v~~g~~~rlrliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~i~i~pgeR~dv~v~a~~~g~~~~~~~~~~~  155 (182)
T 1aoz_A           76 YIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTR  155 (182)
T ss_dssp             CCEEECTTCEEEEEEEECCSSCEEEEEETTCCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEE
T ss_pred             CEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEECC
T ss_conf             22786699889999723655543210136750367840887320002236751475206999994136776268884023


Q ss_pred             CCCC
Q ss_conf             6576
Q gi|254780474|r  226 SGRG  229 (332)
Q Consensus       226 cG~g  229 (332)
                      .+.|
T Consensus       156 ~~~g  159 (182)
T 1aoz_A          156 ARHP  159 (182)
T ss_dssp             SSCC
T ss_pred             CCCC
T ss_conf             4577


No 64 
>>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} (A:)
Probab=49.87  E-value=16  Score=16.07  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=22.2

Q ss_pred             ECCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHC
Q ss_conf             7088999999999860724-5698999997610212
Q gi|254780474|r  239 GKSEKGFEDWISKVKRQGT-FLNRQEYLLLKKPSER  273 (332)
Q Consensus       239 v~s~~~f~~Wv~~~ka~~~-~l~~~~y~~l~~ps~~  273 (332)
                      -+|++||+.|++..+..+. .|-...-.++.+..|.
T Consensus        61 ~LS~eEf~~W~~~~~rhge~aLRat~lq~yRq~ye~   96 (101)
T 2oa4_A           61 GLSDEEFNSWVSALAEHGKDALKVTALKKYRQLLEH   96 (101)
T ss_dssp             CSSHHHHHHHHHHHHCCCSSSSCCHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             989999999999999984998845328999999975


No 65 
>>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, metal-binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis TAC125} (A:150-316)
Probab=49.68  E-value=16  Score=16.05  Aligned_cols=77  Identities=10%  Similarity=-0.017  Sum_probs=53.2

Q ss_pred             CEEEEEECCCEEEEEEEECCC--CHH-------CC---------CHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCC
Q ss_conf             306896369828999983581--011-------02---------201074031169851489999427748966613326
Q gi|254780474|r  165 INELVVPIDRPLEFRITASSV--MNS-------FY---------IPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYS  226 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~DV--iHS-------F~---------IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~c  226 (332)
                      .+.+.+..|..|++.+..+..  -|.       |.         .|..+--+...||-...+.+++|.||.|.--|-...
T Consensus        54 ~~~~~~~~g~~v~~~~~n~~~~~~hp~Hlhg~~f~vv~~~~~~~~p~~~DTv~i~pg~~~~i~~~ad~PG~w~~HCH~~~  133 (167)
T 2zoo_A           54 ENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFKVEVPGTFILVDHSIF  133 (167)
T ss_dssp             GGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCEECSBSEEEECTTEEEEEEEECCSCEEEEEEESSTH
T ss_pred             CCCEEECCCCEEEEEEEECCCCCCCCEEECCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEECCHHH
T ss_conf             77569726998999999568888754487896689998289237998718999937922999998699857999767067


Q ss_pred             CCCCCCCEEEEEECC
Q ss_conf             576113658999708
Q gi|254780474|r  227 GRGFSHMRFKFYGKS  241 (332)
Q Consensus       227 G~ghs~M~f~v~v~s  241 (332)
                      =.-...|...+.+..
T Consensus       134 h~~~~Gm~~~~~v~~  148 (167)
T 2zoo_A          134 RAFNKGALAMLKVEG  148 (167)
T ss_dssp             HHHTTSCEEEEEEES
T ss_pred             HHHHCCCEEEEEEEC
T ss_conf             677268779999716


No 66 
>>2uxt_A Protein SUFI, SUFI; periplasmic, cupredoxin-like, FTS mutant suppressor, oxidoreductase; 1.9A {Escherichia coli} PDB: 2uxv_A (A:146-312)
Probab=49.54  E-value=16  Score=16.04  Aligned_cols=69  Identities=13%  Similarity=0.006  Sum_probs=49.7

Q ss_pred             EEEEECCCEEEEEEEECCCCHHC---CCHHHCC-----------------EECCCCCCCEEEEEEECCCEEEEEECCCCC
Q ss_conf             68963698289999835810110---2201074-----------------031169851489999427748966613326
Q gi|254780474|r  167 ELVVPIDRPLEFRITASSVMNSF---YIPGLAG-----------------QIYAMAGMETKLHAVMNKKGAYSGFSANYS  226 (332)
Q Consensus       167 eL~lPv~~pV~f~ltS~DViHSF---~IP~l~~-----------------k~daiPG~~t~l~~~a~~~G~y~G~cae~c  226 (332)
                      .+..-.|+.++|++-.......|   +|.....                 .+..=||.+-.+-+.++++|.|.-.|....
T Consensus        48 p~~~~~g~~~R~RliNa~~~~~~~~~~i~g~~~~via~DG~~~~~~~~~~~l~i~pgeR~dv~v~~~~~~~~~~~~~~~~  127 (167)
T 2uxt_A           48 PYVEVSRGWVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITCGEAA  127 (167)
T ss_dssp             CEEEECSSEEEEEEEECCSSCCEEEEETTSCCEEEEECSSSEEEEEEEESSEEECTTCEEEEEEECTTCCCEEEEC----
T ss_pred             CEEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCC
T ss_conf             11733586899840031356403479825871699976898100047841379868877999999189984799933665


Q ss_pred             CCCCCCCEE
Q ss_conf             576113658
Q gi|254780474|r  227 GRGFSHMRF  235 (332)
Q Consensus       227 G~ghs~M~f  235 (332)
                      +.+...+..
T Consensus       128 ~~~~~~~~~  136 (167)
T 2uxt_A          128 SIVDRIRGF  136 (167)
T ss_dssp             ---------
T ss_pred             CCCCCCCCC
T ss_conf             444445665


No 67 
>>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} (A:)
Probab=48.86  E-value=14  Score=16.39  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             ECCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHH
Q ss_conf             7088999999999860724-569899999761021
Q gi|254780474|r  239 GKSEKGFEDWISKVKRQGT-FLNRQEYLLLKKPSE  272 (332)
Q Consensus       239 v~s~~~f~~Wv~~~ka~~~-~l~~~~y~~l~~ps~  272 (332)
                      -+|++||..|++.++..+. .|-...-.++.+|.+
T Consensus        60 ~Ls~eEf~~W~~a~~~hge~aLRat~lq~yrq~ye   94 (95)
T 2jrt_A           60 SLSEEEFALWRSAVAAHGEKALKVTMIQKYRQLHH   94 (95)
T ss_dssp             TCCHHHHHHHHHHTTTCCTTSCCTTHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999998299998878999999862


No 68 
>>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} (A:60-117)
Probab=47.63  E-value=17  Score=15.84  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=24.8

Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf             6113658999708899999999986072456
Q gi|254780474|r  229 GFSHMRFKFYGKSEKGFEDWISKVKRQGTFL  259 (332)
Q Consensus       229 ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l  259 (332)
                      |+..|.=-...++++++++|.++.++.+-+.
T Consensus         2 g~~~~~HiAf~V~~~~~~~~~~~L~~~gv~~   32 (58)
T 1npb_A            2 QESDYTHYAFTVAEEDFEPLSQRLEQAGVTI   32 (58)
T ss_dssp             GGSCSCEEEEECCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHHCCCEE
T ss_conf             7888662466403877999999999889828


No 69 
>>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} (A:311-552)
Probab=45.22  E-value=18  Score=15.58  Aligned_cols=50  Identities=16%  Similarity=0.031  Sum_probs=38.2

Q ss_pred             HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHH
Q ss_conf             107403116985148999942774896661332657611365899970889
Q gi|254780474|r  193 GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEK  243 (332)
Q Consensus       193 ~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~  243 (332)
                      ..+--+..-||-...+.|++|.+|.|.--|--. --..+.|...+++..++
T Consensus       168 ~~rDtv~i~pg~~~~i~f~adnpG~w~~HCHi~-~H~~~GM~~~~~v~~~~  217 (242)
T 1aoz_A          168 PLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIE-PHLHMGMGVVFAEGVEK  217 (242)
T ss_dssp             CEESEEEECTTEEEEEEEECCSCEEEEEEESSH-HHHHTTCEEEEEECGGG
T ss_pred             CCEEEEEECCCCEEEEEEECCCCEEEEEECCCH-HHHHCCCCEEEEECCHH
T ss_conf             721389969998899999918987617801707-88767493999986100


No 70 
>>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} (A:166-213)
Probab=44.85  E-value=7.6  Score=18.26  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=15.8

Q ss_pred             EEEEEECC--------CCCCCCEEEEEECC
Q ss_conf             69999626--------78774306896369
Q gi|254780474|r  152 KWLFLLPE--------QQVAIINELVVPID  173 (332)
Q Consensus       152 ~W~F~YP~--------~giatvneL~lPv~  173 (332)
                      .|.|.|-|        +...+..|+.+|+.
T Consensus        13 ~w~fdykdsqiilyp~~~~e~leeialpvs   42 (48)
T 2c1i_A           13 AWNFDYKDSQIILYPSPVVENLEEIALPVS   42 (48)
T ss_dssp             GCCEEEETTEEEEC---------CEEEEGG
T ss_pred             CCCEEECCCCEEEEECCCCCCCEEEEECHH
T ss_conf             242376178179981688877504772078


No 71 
>>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygenase; structural genomics, PSI-2, protein structure initiative; 1.82A {Burkholderia phytofirmans psjn} (A:69-141)
Probab=41.55  E-value=21  Score=15.20  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=29.9

Q ss_pred             CCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf             26576113658999708899999999986072456
Q gi|254780474|r  225 YSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFL  259 (332)
Q Consensus       225 ~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l  259 (332)
                      |...+.+.+.+.+.+.|+++-|++.+++++.+.+.
T Consensus         1 ~a~~~~~~~~laf~v~s~e~Vd~~~~~~~~~G~~i   35 (73)
T 2rbb_A            1 FSETSGIKFLLNFDVDTKEAVDKLVPVAIAAGATL   35 (73)
T ss_dssp             GCCCBSCCEEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEE
T ss_conf             42136870487541133314555555420322034


No 72 
>>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} (A:)
Probab=39.38  E-value=22  Score=14.98  Aligned_cols=78  Identities=15%  Similarity=0.306  Sum_probs=47.9

Q ss_pred             EEEEEEEECCCCHHCCCHHH-----CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf             28999983581011022010-----7403116985148999942774896661332657611365899970889999999
Q gi|254780474|r  175 PLEFRITASSVMNSFYIPGL-----AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWI  249 (332)
Q Consensus       175 pV~f~ltS~DViHSF~IP~l-----~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv  249 (332)
                      =|++.+-..+--+.+.|-+.     ++|-|.+.+-.|..++....-+.-+-..-++    .|+..|     +++||+.|.
T Consensus        55 FVRv~ig~~~~~~~Yri~qI~gv~~~~k~Y~~~~~~T~~~L~l~~g~~~~~~~l~~----iSn~~f-----te~E~~~w~  125 (153)
T 2bze_A           55 FVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEF----VSNQEF-----TESEFMKWK  125 (153)
T ss_dssp             EEEEESSTTSSSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESSSCEEEECGGG----BCCSCC-----CHHHHHHHH
T ss_pred             EEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEE----EECCCC-----CHHHHHHHH
T ss_conf             89997289899872699999755506863545886353699998789622887688----748999-----999999999


Q ss_pred             HHHHCCCCCCCH
Q ss_conf             998607245698
Q gi|254780474|r  250 SKVKRQGTFLNR  261 (332)
Q Consensus       250 ~~~ka~~~~l~~  261 (332)
                      +..+.++..+-.
T Consensus       126 ~~~~~~~~~~pt  137 (153)
T 2bze_A          126 EAMFSAGMQLPT  137 (153)
T ss_dssp             HHHHHHTCCCCB
T ss_pred             HHHHHCCCCCCC
T ss_conf             999966999999


No 73 
>>1pgs_A Peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase F; endoglycosidase; 1.80A {Elizabethkingia meningoseptica} (A:138-314)
Probab=39.28  E-value=19  Score=15.46  Aligned_cols=33  Identities=15%  Similarity=-0.062  Sum_probs=20.5

Q ss_pred             CCCCCEEEEEEECCCEEE--------EEECCCCCCCCCCCC
Q ss_conf             698514899994277489--------666133265761136
Q gi|254780474|r  201 MAGMETKLHAVMNKKGAY--------SGFSANYSGRGFSHM  233 (332)
Q Consensus       201 iPG~~t~l~~~a~~~G~y--------~G~cae~cG~ghs~M  233 (332)
                      +|.-..+..+.|--.|-=        ...|||||=..|-.+
T Consensus        38 ~P~~t~kv~l~aiITGHG~~~~~dsD~~~CaEfC~ttH~f~   78 (177)
T 1pgs_A           38 LPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWCFRTHTIA   78 (177)
T ss_dssp             CCTTCSEEEEEEEEEEECEEEEEETTTEEEETTSCEEEEEE
T ss_pred             CCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEECCEEEEEE
T ss_conf             89775369999999873123677888865412414116999


No 74 
>>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor} (A:185-343)
Probab=39.11  E-value=22  Score=14.95  Aligned_cols=78  Identities=9%  Similarity=-0.066  Sum_probs=49.4

Q ss_pred             CEEEEEECCCEEEEEEEECCC-CHHCCC-------HHHCCE------------ECCCCC---CCEEEEEEECCCEEEEEE
Q ss_conf             306896369828999983581-011022-------010740------------311698---514899994277489666
Q gi|254780474|r  165 INELVVPIDRPLEFRITASSV-MNSFYI-------PGLAGQ------------IYAMAG---METKLHAVMNKKGAYSGF  221 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~DV-iHSF~I-------P~l~~k------------~daiPG---~~t~l~~~a~~~G~y~G~  221 (332)
                      ...|.+..|..|+++++.+.. -|+|-+       ..-++.            .+..++   ......+.++.+|+|.-.
T Consensus        24 ~p~i~~~~Gd~v~i~~~N~~~~~h~~h~Hg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~H  103 (159)
T 3cg8_A           24 GPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYH  103 (159)
T ss_dssp             CCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEE
T ss_pred             CCCCCCCCCCEEEEEEEEECCCEEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEE
T ss_conf             66431368988999999403430479992866799987776787778740207997998328999995778998658997


Q ss_pred             CCCCCCCCCCCCEEEEEECCHH
Q ss_conf             1332657611365899970889
Q gi|254780474|r  222 SANYSGRGFSHMRFKFYGKSEK  243 (332)
Q Consensus       222 cae~cG~ghs~M~f~v~v~s~~  243 (332)
                      |-.. +.--+.|...+++.+++
T Consensus       104 cH~~-~H~~~Gm~g~~iV~~~~  124 (159)
T 3cg8_A          104 CHVQ-SHSDMGMVGLFLVKKPD  124 (159)
T ss_dssp             ECSH-HHHHTTCEEEEEEECTT
T ss_pred             CCCH-HHHHCCCCEEEEEECCC
T ss_conf             4888-99977995799998788


No 75 
>>2q9o_A Laccase-1; multicopper oxidase, 2- oxohistidine, oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} (A:161-335)
Probab=35.88  E-value=25  Score=14.60  Aligned_cols=60  Identities=8%  Similarity=0.056  Sum_probs=45.0

Q ss_pred             EEEEEECCCEEEEEEEECCCC---------HHCCCHHHC---------CEECCCCCCCEEEEEEEC-CCEEEEEECCCC
Q ss_conf             068963698289999835810---------110220107---------403116985148999942-774896661332
Q gi|254780474|r  166 NELVVPIDRPLEFRITASSVM---------NSFYIPGLA---------GQIYAMAGMETKLHAVMN-KKGAYSGFSANY  225 (332)
Q Consensus       166 neL~lPv~~pV~f~ltS~DVi---------HSF~IP~l~---------~k~daiPG~~t~l~~~a~-~~G~y~G~cae~  225 (332)
                      ..+.+..|+.++|+|-.....         |+|+|-+.-         -.+..-||.+-.+-++++ ++|.|...|...
T Consensus        55 ~~~~~~~g~~~RlRliNa~~~~~~~l~i~gh~~~vva~DG~~v~p~~~~~l~i~~GqR~dvlv~~~~~~g~~~i~~~~~  133 (175)
T 2q9o_A           55 ANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFG  133 (175)
T ss_dssp             CEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCSSEEEEEEECC
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCEECCCCCEECCEECCEEECCCCCEEEEEEEEECCCCCEEEEEECC
T ss_conf             5689756977888786047774047663554431255788302130025695268727999998102897127988506


No 76 
>>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii} (A:)
Probab=33.30  E-value=8.8  Score=17.81  Aligned_cols=107  Identities=9%  Similarity=0.135  Sum_probs=64.7

Q ss_pred             EEEEECCCCC----------CCCEEEEEECCCEEE-EEEEECC-----CCHHCCCHH--HCCEECCCC-C-CCEEEEEEE
Q ss_conf             9999626787----------743068963698289-9998358-----101102201--074031169-8-514899994
Q gi|254780474|r  153 WLFLLPEQQV----------AIINELVVPIDRPLE-FRITASS-----VMNSFYIPG--LAGQIYAMA-G-METKLHAVM  212 (332)
Q Consensus       153 W~F~YP~~gi----------atvneL~lPv~~pV~-f~ltS~D-----ViHSF~IP~--l~~k~daiP-G-~~t~l~~~a  212 (332)
                      .-|.||-++.          -...++..--|-|+. +...+.+     ..+...-.+  +-.-...+. | -.+.++|..
T Consensus        11 ~~~v~~TED~~KV~~Ai~nifp~~~~eg~~gn~i~il~~~~~~~~~l~~f~~~l~~~~ild~~r~~L~~~~~~~~~~~rl   90 (138)
T 3d7a_A           11 EAYVYPTEDIRKVKKAMLNLIPGLQFEAFDKGEYVILVGRTKDKRALQRLYELFRGQQILDTARMMLEEGYFGEEIIIKV   90 (138)
T ss_dssp             EEEECTTBCHHHHHHHHHHHSTTCEEEEEECSSSEEEEEEECCTTTTHHHHHHHHHTTCHHHHHHHHHHTEETTEEEEEE
T ss_pred             EEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99985878989999999986898402220589824799997571679999999986700899999998272288799999


Q ss_pred             CCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf             27748966613326576113658999708899999999986072456
Q gi|254780474|r  213 NKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFL  259 (332)
Q Consensus       213 ~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l  259 (332)
                      ||.-.|.|.++=--|..-...++++.+-+++++-.|++-.-..|.++
T Consensus        91 ~KQaAy~G~v~~~~~~dli~I~v~i~~~~~~~~id~lap~t~~G~pv  137 (138)
T 3d7a_A           91 HKQVAYVGKVNFNEDSPLGPITITIRTKEPQKLMKWLAPRTKDGVPI  137 (138)
T ss_dssp             EHHHHHTTCCCCCSCCTTCEEEEEEECSCHHHHHHHHSCCEETTEEC
T ss_pred             EHHHHHCCCEECCCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCEEC
T ss_conf             75897589654667899667899998089899998723557798048


No 77 
>>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170)
Probab=30.57  E-value=26  Score=14.53  Aligned_cols=14  Identities=29%  Similarity=0.674  Sum_probs=11.2

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             08899999999986
Q gi|254780474|r  240 KSEKGFEDWISKVK  253 (332)
Q Consensus       240 ~s~~~f~~Wv~~~k  253 (332)
                      +++++|.+|.+...
T Consensus         1 mt~e~F~~W~~r~g   14 (81)
T 2auw_A            1 VSHEXFGDWXHRNN   14 (81)
T ss_dssp             CCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHCC
T ss_conf             88999999999859


No 78 
>>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} (A:244-283)
Probab=29.78  E-value=30  Score=14.09  Aligned_cols=14  Identities=14%  Similarity=0.482  Sum_probs=10.7

Q ss_pred             EECCHHHHHHHHHH
Q ss_conf             97088999999999
Q gi|254780474|r  238 YGKSEKGFEDWISK  251 (332)
Q Consensus       238 ~v~s~~~f~~Wv~~  251 (332)
                      ++-++|.|++|+++
T Consensus        23 isrd~e~F~awl~e   36 (40)
T 1poi_A           23 VSKTQEDFDAFCKE   36 (40)
T ss_dssp             HTTSHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHH
T ss_conf             84598999999999


No 79 
>>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (A:)
Probab=28.03  E-value=33  Score=13.72  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999885
Q gi|254780474|r   52 IAVALMLLIVVPVFFSILFFAWK   74 (332)
Q Consensus        52 ~~~~l~liV~v~V~~l~~~~~~k   74 (332)
                      +...++.+..+.+++++.+.+||
T Consensus        13 wiIi~s~i~GlllLali~~~L~K   35 (54)
T 2knc_A           13 WWVLVGVLGGLLLLTILVLAMWK   35 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             58899999999999999999998


No 80 
>>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* (A:325-538)
Probab=27.63  E-value=28  Score=14.23  Aligned_cols=83  Identities=13%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             EEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCC--CEEEEEEECCCEEEEEECCC
Q ss_conf             9984369999626787743068963698289999835810110220107403116985--14899994277489666133
Q gi|254780474|r  147 VALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGM--ETKLHAVMNKKGAYSGFSAN  224 (332)
Q Consensus       147 ~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~--~t~l~~~a~~~G~y~G~cae  224 (332)
                      .+.+|.|........      ...+...+-.++|+.++-..+..-|.+-++...=+-.  ++++.+.+...|..-|.+.-
T Consensus        17 L~~~W~~~~~p~~~~------~~~~~~~~g~l~l~~~~~~~~~~~~~~l~~r~~~~~f~~~t~v~~~~~~~~~~aGL~v~   90 (214)
T 3c2u_A           17 LNINFQTLRIPFSEH------LGSLTARPGFLRLYGRESLQSKFTQAHIARRWQSFNFDAGTSVEFSPNSFQQMAGLTCY   90 (214)
T ss_dssp             CCTTCEEESSCCCTT------TEESSSSTTSEEEECBSCTTCSSCCEEEEEECCSSEEEEEEEEECCCSSTTEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCC------EEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEE
T ss_conf             534473135788653------55661788348754755666556762567862157248999953587654653168999


Q ss_pred             CCCCCCCCCEE
Q ss_conf             26576113658
Q gi|254780474|r  225 YSGRGFSHMRF  235 (332)
Q Consensus       225 ~cG~ghs~M~f  235 (332)
                      ++-..|....+
T Consensus        91 ~~~~~~~~~~~  101 (214)
T 3c2u_A           91 YNTENWSSIHV  101 (214)
T ss_dssp             EETTEEEEEEE
T ss_pred             ECCCCCEEEEE
T ss_conf             85788099999


No 81 
>>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii} (A:)
Probab=27.57  E-value=34  Score=13.67  Aligned_cols=15  Identities=7%  Similarity=0.080  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999988530467
Q gi|254780474|r   65 FFSILFFAWKYRSTN   79 (332)
Q Consensus        65 ~~l~~~~~~kyR~~~   79 (332)
                      +++++|..||+|+++
T Consensus        32 igLT~YA~~r~~~~~   46 (46)
T 1waz_A           32 IGLTIYAIQRKRQAD   46 (46)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             999999999987069


No 82 
>>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreductase; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} (A:129-297)
Probab=27.31  E-value=34  Score=13.64  Aligned_cols=58  Identities=12%  Similarity=0.021  Sum_probs=42.1

Q ss_pred             EEEEEECCCEEEEEEEECCC--CHHCCCHHHCC----------------EECCCCCCCEEEEEEECCCEEEEEECC
Q ss_conf             06896369828999983581--01102201074----------------031169851489999427748966613
Q gi|254780474|r  166 NELVVPIDRPLEFRITASSV--MNSFYIPGLAG----------------QIYAMAGMETKLHAVMNKKGAYSGFSA  223 (332)
Q Consensus       166 neL~lPv~~pV~f~ltS~DV--iHSF~IP~l~~----------------k~daiPG~~t~l~~~a~~~G~y~G~ca  223 (332)
                      -.+.+..|+.++|+|-...-  .+.|.|..-..                .+..-||.+-.+-++++++|.+.-.|.
T Consensus        50 p~~~v~~Ge~~R~RiiN~~~~~~~~l~i~g~~~~vi~~DG~~~~p~~~~~~~i~pg~R~dv~v~~~~~~~~~~~~~  125 (169)
T 1zpu_A           50 LTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDKNFAIM  125 (169)
T ss_dssp             CEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCSSCCEEEE
T ss_pred             CCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEE
T ss_conf             4220479865888761465540011020135542111324422222068999758874699998156888627877


No 83 
>>2jhp_A VP4 core protein; guanylyltransferase, viral capping enzyme, virion protein, methyltransferase, viral protein; HET: SAH GUN; 2.5A {Bluetongue virus 10} PDB: 2jh8_A* 2jha_A* 2jhc_A* 2jh9_A* (A:95-165,A:399-514)
Probab=26.58  E-value=32  Score=13.88  Aligned_cols=30  Identities=33%  Similarity=0.759  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHCCC-CCCCCCCCCCCCCCEE
Q ss_conf             99999998853046-7777778753456612
Q gi|254780474|r   65 FFSILFFAWKYRST-NKKARYDPKWCHSTLL   94 (332)
Q Consensus        65 ~~l~~~~~~kyR~~-~~~a~~~p~~~hs~~l   94 (332)
                      .+.+++.+|||-.. +++-.|+|.|..|-.+
T Consensus       144 nGaiLfLmWkyp~~~~k~l~YDPaWA~~faV  174 (187)
T 2jhp_A          144 NGAILFLMWRYPDIVKKDLTYDPAWAMNFAV  174 (187)
T ss_dssp             HHHHHHHHHHCTTTSCTTCCCCHHHHTTEEE
T ss_pred             CCEEEEEEHHCCCCCCCCCCCCHHHHHHEEE
T ss_conf             7503432201467457777778778751338


No 84 
>>2qt6_A Laccase; beta barrel, oxidoreductase; HET: CBS BMA NAG MAN TLA; 1.50A {Lentinus tigrinus} PDB: 1gyc_A* 2vdz_A* 1kya_A* 3fpx_A* 2ve0_A* 2vds_A* 2hrg_A* 2hrh_A* 3div_A* 2h5u_A* 2hzh_A* (A:137-302)
Probab=26.40  E-value=35  Score=13.53  Aligned_cols=74  Identities=18%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             CEEEEEECCCEEEEEEEECC--CCHHCCCHHHC----------------CEECCCCCCCEEEEEEECCCE-EEEEE-CCC
Q ss_conf             30689636982899998358--10110220107----------------403116985148999942774-89666-133
Q gi|254780474|r  165 INELVVPIDRPLEFRITASS--VMNSFYIPGLA----------------GQIYAMAGMETKLHAVMNKKG-AYSGF-SAN  224 (332)
Q Consensus       165 vneL~lPv~~pV~f~ltS~D--ViHSF~IP~l~----------------~k~daiPG~~t~l~~~a~~~G-~y~G~-cae  224 (332)
                      ...+.++.|+.|+|+|....  -.|+|.+...-                -....-||.+-.+-++++++| .|.-. |..
T Consensus        49 ~~~~~v~~G~~vRlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~i~pgqr~dv~v~~~~~~~~~~~~~~~~  128 (166)
T 2qt6_A           49 LAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQDVDNYWIRANPN  128 (166)
T ss_dssp             CCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESEEEECTTCEEEEEEECCSCSSEEEEEEEES
T ss_pred             CCEEEECCCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCEEEEEECEEEEECCCCEEEEEEECCCCCCEEEEECCC
T ss_conf             54499716978989997616785426786465226884166320257615799705875689996068888379993257


Q ss_pred             CCCCCCCCCEEEEE
Q ss_conf             26576113658999
Q gi|254780474|r  225 YSGRGFSHMRFKFY  238 (332)
Q Consensus       225 ~cG~ghs~M~f~v~  238 (332)
                      .-..+.+.+....+
T Consensus       129 ~~~~~~~~~~~~~i  142 (166)
T 2qt6_A          129 FGTTGFADGVNSAI  142 (166)
T ss_dssp             SSSCSCGGGTTEEE
T ss_pred             CCCCCCCCCCCEEE
T ss_conf             67655557763267


No 85 
>>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A (A:)
Probab=26.17  E-value=36  Score=13.50  Aligned_cols=49  Identities=18%  Similarity=0.160  Sum_probs=35.0

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHHCCCCEEECCCCCCHHHHHH
Q ss_conf             0889999999998607245698999997---610212632172047835426873
Q gi|254780474|r  240 KSEKGFEDWISKVKRQGTFLNRQEYLLL---KKPSERDSVRYFSPIEKGLYYSIL  291 (332)
Q Consensus       240 ~s~~~f~~Wv~~~ka~~~~l~~~~y~~l---~~ps~~~~~~~f~~~~~~lf~~i~  291 (332)
                      ||+++|++=+..++..+..++.+...+|   .++....+   |..-.|+.|+.+-
T Consensus         1 mse~~F~~A~~~v~~~~~~~~~~~~L~LY~lyKQat~G~---~~~~~p~~~~~~~   52 (87)
T 2cb8_A            1 MSQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGD---INTERPGMLDFTG   52 (87)
T ss_dssp             -CHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCS---CCSCCCCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC---CCCCCCCCCCHHH
T ss_conf             989999999999985779958799999999999982289---8888998344999


No 86 
>>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} (A:97-150)
Probab=25.21  E-value=37  Score=13.38  Aligned_cols=31  Identities=13%  Similarity=0.400  Sum_probs=23.7

Q ss_pred             CCCCCCCEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf             5761136589997088999999999860724
Q gi|254780474|r  227 GRGFSHMRFKFYGKSEKGFEDWISKVKRQGT  257 (332)
Q Consensus       227 G~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~  257 (332)
                      +..-+.-...|-+.|+||...||.+.|...+
T Consensus        22 ~p~~~~~sLDvaAds~Eel~dWv~KIREaaq   52 (54)
T 2fjl_A           22 MPSVAQWSLDVAADSQEELQDWVKKIREVAQ   52 (54)
T ss_dssp             CTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             6998852188872549999999999999984


No 87 
>>2qt6_A Laccase; beta barrel, oxidoreductase; HET: CBS BMA NAG MAN TLA; 1.50A {Lentinus tigrinus} PDB: 1gyc_A* 2vdz_A* 1kya_A* 3fpx_A* 2ve0_A* 2vds_A* 2hrg_A* 2hrh_A* 3div_A* 2h5u_A* 2hzh_A* (A:303-477)
Probab=24.24  E-value=39  Score=13.25  Aligned_cols=55  Identities=5%  Similarity=-0.130  Sum_probs=40.2

Q ss_pred             CCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHH
Q ss_conf             02201074031169851489999427748966613326576113658999708899
Q gi|254780474|r  189 FYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKG  244 (332)
Q Consensus       189 F~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~  244 (332)
                      +.-|....-...-||-...+.|.++.+|.|.--|-..- --=+.|-..+.|.+++.
T Consensus       117 ~~~~~~~dt~~~~pg~~~~i~f~a~~pG~w~~HCHi~~-H~~~GM~~~~~V~~~~~  171 (175)
T 2qt6_A          117 PVWRDVVSTGTPQAGDNVTIRFQTDNPGPWFLHCHIDF-HLDAGFAVVMAEDIPNT  171 (175)
T ss_dssp             CCEESEEECCCTTTTCEEEEEEECCCCEEEEEEESSHH-HHHTTCEEEEEETHHHH
T ss_pred             CCEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCHH-HHHCCCCEEEEECCCCC
T ss_conf             85340598226799958999999389885388478567-87584909999858540


No 88 
>>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis} (A:)
Probab=23.95  E-value=39  Score=13.23  Aligned_cols=14  Identities=29%  Similarity=0.693  Sum_probs=11.7

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             08899999999986
Q gi|254780474|r  240 KSEKGFEDWISKVK  253 (332)
Q Consensus       240 ~s~~~f~~Wv~~~k  253 (332)
                      +++++|++|++++-
T Consensus        14 v~~~~fe~Wv~etD   27 (105)
T 2jdj_A           14 AQADAFEFWVQNVD   27 (105)
T ss_dssp             GGHHHHHHHHHHTH
T ss_pred             CCHHHHHHHHHHCC
T ss_conf             99899999998664


No 89 
>>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} (A:82-144)
Probab=23.14  E-value=41  Score=13.11  Aligned_cols=31  Identities=10%  Similarity=0.055  Sum_probs=25.3

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCCCCC
Q ss_conf             1136589997088999999999860724569
Q gi|254780474|r  230 FSHMRFKFYGKSEKGFEDWISKVKRQGTFLN  260 (332)
Q Consensus       230 hs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l~  260 (332)
                      -+.+.+...+.+.+|.|++.+++++.+.+..
T Consensus         4 ~~~~~~~~~~~s~~dVd~~~~~~~~~G~~i~   34 (63)
T 2kjz_A            4 GGGGELAFRVENDAQVDETFAGWKASGVAML   34 (63)
T ss_dssp             SSSCEEEEECSSHHHHHHHHHHHHHTTCCCC
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCCEEE
T ss_conf             8604763101243038999999986698285


No 90 
>>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} (A:1-19,A:215-397)
Probab=21.72  E-value=43  Score=12.92  Aligned_cols=39  Identities=21%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             EEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCC
Q ss_conf             068963698289999835810110220107403116985
Q gi|254780474|r  166 NELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGM  204 (332)
Q Consensus       166 neL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~  204 (332)
                      .-+++|+|-|+.+.-+|+=.|-.|.|-+=.-..+-..|+
T Consensus       103 ~v~VvPaghP~~~~a~snL~iv~F~vnA~~N~r~~laGr  141 (202)
T 2phl_A          103 DVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGK  141 (202)
T ss_dssp             CEEEECTTCCEEEEESSSEEEEEEEESCTTCCEEESSSS
T ss_pred             CEEEECCCCEEEEEECCCEEEEEEEECCCCCCEEECCCC
T ss_conf             689999999288980798079999942788710114677


No 91 
>>2q9o_A Laccase-1; multicopper oxidase, 2- oxohistidine, oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} (A:336-525)
Probab=21.67  E-value=43  Score=12.91  Aligned_cols=49  Identities=12%  Similarity=-0.034  Sum_probs=35.7

Q ss_pred             HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHH
Q ss_conf             07403116985148999942774896661332657611365899970889
Q gi|254780474|r  194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEK  243 (332)
Q Consensus       194 l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~  243 (332)
                      .+--+..-||-...+.+.||.+|.|.--|.-+- --.+.|-..+.+.+++
T Consensus       140 ~kDtv~v~p~~~~~i~f~ad~pG~w~~HCHil~-H~~~GM~~~~~V~~~d  188 (190)
T 2q9o_A          140 RRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAW-HVSGGLSVDFLERPAD  188 (190)
T ss_dssp             EESEEEECTTSEEEEEEECCSCEEEEEEECCHH-HHHTTCEEEEEECHHH
T ss_pred             CEEEEEECCCCEEEEEEEECCCEEEEEECCCHH-HHHCCCCEEEEECHHH
T ss_conf             200899599988999999089766589358567-8767597998878778


No 92 
>>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} (A:)
Probab=21.22  E-value=23  Score=14.83  Aligned_cols=23  Identities=13%  Similarity=0.297  Sum_probs=10.6

Q ss_pred             EEEECCCEEEEE--EEECCCCHHCC
Q ss_conf             896369828999--98358101102
Q gi|254780474|r  168 LVVPIDRPLEFR--ITASSVMNSFY  190 (332)
Q Consensus       168 L~lPv~~pV~f~--ltS~DViHSF~  190 (332)
                      ...|.|+|..-.  ++.-+++...|
T Consensus       311 ~~SasD~p~qy~~~l~d~~~i~~g~  335 (581)
T 2j5l_A          311 ELSASDQPKQYEQHLTDYEKIKEGF  335 (581)
T ss_dssp             -------------------------
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             4584337320000233145554344


No 93 
>>1kv7_A CUEO, probable blue-copper protein YACK; multi-copper oxidase, T1 (blue) copper, oxidoreductase; 1.40A {Escherichia coli} (A:308-488)
Probab=21.10  E-value=44  Score=12.83  Aligned_cols=63  Identities=14%  Similarity=0.123  Sum_probs=41.0

Q ss_pred             CCEEEEEECCCEEEEEEEECCC--CHHCCCHHH-------CC---------EECC--CCCCCEE----EEEEECCCEEEE
Q ss_conf             4306896369828999983581--011022010-------74---------0311--6985148----999942774896
Q gi|254780474|r  164 IINELVVPIDRPLEFRITASSV--MNSFYIPGL-------AG---------QIYA--MAGMETK----LHAVMNKKGAYS  219 (332)
Q Consensus       164 tvneL~lPv~~pV~f~ltS~DV--iHSF~IP~l-------~~---------k~da--iPG~~t~----l~~~a~~~G~y~  219 (332)
                      ..+.+.++.|..|++.+....-  -|+|-+-.-       ++         ..|.  +|...+.    +.+.|+.+|.|-
T Consensus        83 ~~~~~~~~~G~~v~~~l~n~~~~~~Hp~HlHg~~f~v~~~~~~~~~~~~~~~~Dtv~v~~~~~~~~~v~~~~a~~pG~w~  162 (181)
T 1kv7_A           83 NKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYM  162 (181)
T ss_dssp             TCCSEECCSSSCEEEEEECTTCCCCEEEEETTCCBEEEEBTTBCCCGGGSSSBSEEEESSSEEEEEECCCSCCCGGGCEE
T ss_pred             CCCEEEECCCCEEEEEEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCEEE
T ss_conf             87208816998999999959999987979669748999547975875568876369969996799999976799984389


Q ss_pred             EECCCCC
Q ss_conf             6613326
Q gi|254780474|r  220 GFSANYS  226 (332)
Q Consensus       220 G~cae~c  226 (332)
                      --|--+-
T Consensus       163 ~HCHi~~  169 (181)
T 1kv7_A          163 AHCHLLE  169 (181)
T ss_dssp             EEESSHH
T ss_pred             EECCCHH
T ss_conf             8378079


No 94 
>>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, structural genomics, protein structure initiative; 1.40A {Fulvimarina pelagi HTCC2506} (A:67-127)
Probab=20.97  E-value=45  Score=12.81  Aligned_cols=29  Identities=10%  Similarity=0.127  Sum_probs=24.3

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf             13658999708899999999986072456
Q gi|254780474|r  231 SHMRFKFYGKSEKGFEDWISKVKRQGTFL  259 (332)
Q Consensus       231 s~M~f~v~v~s~~~f~~Wv~~~ka~~~~l  259 (332)
                      ....+...+.|+++-|+|.+++++.+.+.
T Consensus         3 ~~~hiaf~~~s~e~Vd~~~~~~~~~G~~i   31 (61)
T 3bqx_A            3 GSXALAHNVRAETEVAPLXERLVAAGGQL   31 (61)
T ss_dssp             CSCEEEEECSSGGGHHHHHHHHHHTTCEE
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHHCCCCE
T ss_conf             43389999678899789999998354856


No 95 
>>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} (A:)
Probab=20.70  E-value=45  Score=12.78  Aligned_cols=34  Identities=6%  Similarity=0.038  Sum_probs=27.7

Q ss_pred             EEEEEECCCEEEEEECCC--CCCCCCCCCEEEEEECCHH
Q ss_conf             899994277489666133--2657611365899970889
Q gi|254780474|r  207 KLHAVMNKKGAYSGFSAN--YSGRGFSHMRFKFYGKSEK  243 (332)
Q Consensus       207 ~l~~~a~~~G~y~G~cae--~cG~ghs~M~f~v~v~s~~  243 (332)
                      ...++.+++|.|+-.|+.  -|..|   |++.|.|.+..
T Consensus        71 ~~~v~l~~~g~~yFic~~~~hC~~G---mk~~I~v~~~~  106 (109)
T 1ws8_A           71 ADSIPLKRPGTFYFLCGIPGHCQLG---QKVEIKVDPGS  106 (109)
T ss_dssp             EEEEECCSSEEEEEECCSTTTTTTT---CEEEEEECC--
T ss_pred             CCEEEECCCCCEEEECCCCCCCCCC---CEEEEEEECCC
T ss_conf             8089966883789988997802079---96899995799


No 96 
>>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* (A:1-178)
Probab=20.38  E-value=46  Score=12.73  Aligned_cols=62  Identities=6%  Similarity=0.126  Sum_probs=37.3

Q ss_pred             CCCHHHHHHHHHHHH------CCCCEEECCCCCCHHHHHHCCCCCCCCCCCC-HHHCCCCCCCCCHHHC
Q ss_conf             569899999761021------2632172047835426873152444885660-2102466688523440
Q gi|254780474|r  258 FLNRQEYLLLKKPSE------RDSVRYFSPIEKGLYYSILNLCVHPGKICMD-EMMRIDALGGGGMRGI  319 (332)
Q Consensus       258 ~l~~~~y~~l~~ps~------~~~~~~f~~~~~~lf~~i~~~~~~~~~~~~~-~~m~~~~~~g~~~~~~  319 (332)
                      .-|.++|..|.+--+      ..+.-+|-+++|.+|..|+..--..|-.... .-..+..-=|...++.
T Consensus        86 ~~~~~~y~~L~~~l~~~e~~~~~~~ifYlAvpP~~f~~i~~~l~~~~l~~~~~~RiviEKPfG~dl~Sa  154 (178)
T 2bh9_A           86 YDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSS  154 (178)
T ss_dssp             SSCHHHHHHHHHHHHTTTTTTTSEEEEEECSCTTSHHHHHHHHHHHSCCSSSCEEEEECSCSCSSHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
T ss_conf             898789999999999874288776279983598998999999998558756762167614433567879


Done!