Query gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus str. psy62] Match_columns 332 No_of_seqs 221 out of 1420 Neff 5.6 Searched_HMMs 33803 Date Wed Jun 1 13:23:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780474.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1cyx_A CYOA; electron transpo 100.0 0 0 414.4 17.5 201 117-326 1-203 (205) 2 >1fft_B Ubiquinol oxidase; ele 100.0 0 0 410.9 10.6 192 135-326 2-195 (197) 3 >3hb3_B Cytochrome C oxidase s 100.0 2.6E-43 0 327.3 14.8 127 138-264 1-151 (162) 4 >2gsm_B Cytochrome C oxidase s 100.0 2.9E-42 0 319.8 14.9 120 138-257 3-160 (160) 5 >1v54_B Cytochrome C oxidase p 100.0 4.6E-42 0 318.4 13.5 113 140-252 2-135 (136) 6 >1xme_B Cytochrome C oxidase p 100.0 6.3E-34 1.9E-38 260.5 3.9 95 147-241 4-114 (114) 7 >2cua_A Protein (CUA); CUA cen 100.0 9.8E-33 2.9E-37 252.1 1.3 105 137-241 15-135 (135) 8 >1qni_A Nitrous-oxide reductas 99.9 2.9E-27 8.4E-32 213.2 11.3 98 144-241 27-128 (129) 9 >1iby_A Nitrosocyanin; RED cop 99.9 1.6E-26 4.8E-31 207.9 10.2 98 140-238 12-111 (112) 10 >1fwx_A Nitrous oxide reductas 99.9 5E-21 1.5E-25 168.8 11.0 98 137-244 69-170 (170) 11 >3hb3_B Cytochrome C oxidase s 99.4 1.5E-12 4.5E-17 108.5 8.6 86 34-121 48-133 (136) 12 >1paz_A Pseudoazurin precursor 98.6 2.6E-07 7.6E-12 71.4 9.6 101 141-252 2-105 (123) 13 >1pmy_A Pseudoazurin; electron 98.5 5.9E-07 1.7E-11 68.8 8.4 105 141-256 2-109 (123) 14 >3erx_A Pseudoazurin; copper p 98.4 2.5E-06 7.4E-11 64.4 9.4 103 142-255 3-108 (123) 15 >3ef4_A Pseudoazurin, blue cop 98.2 4.4E-06 1.3E-10 62.7 6.6 85 165-254 21-108 (124) 16 >1id2_A Amicyanin; beta barrel 97.7 0.00024 7E-09 50.3 8.3 88 138-240 16-106 (106) 17 >1bxv_A Plastocyanin; copper p 97.2 0.002 6E-08 43.7 7.6 71 165-240 18-91 (91) 18 >2ov0_A Amicyanin; beta-sandwi 97.1 0.0037 1.1E-07 41.8 8.5 87 137-240 14-105 (105) 19 >1iuz_A Plastocyanin; electron 96.6 0.012 3.5E-07 38.2 7.7 73 165-240 17-98 (98) 20 >3fsa_A Azurin; copper, cupred 96.4 0.0055 1.6E-07 40.6 4.7 72 164-240 16-125 (125) 21 >2ux6_A Pseudoazurin; type-1 c 96.2 0.091 2.7E-06 31.9 10.2 89 142-243 3-94 (122) 22 >1b3i_A PETE protein, protein 95.9 0.073 2.2E-06 32.6 8.6 86 142-240 3-97 (97) 23 >2aan_A Auracyanin A; cupredox 95.9 0.037 1.1E-06 34.8 7.0 74 164-239 33-138 (139) 24 >2dv6_A Nitrite reductase; ele 95.8 0.07 2.1E-06 32.8 8.1 101 142-243 29-134 (146) 25 >3c75_A Amicyanin; copper prot 95.6 0.066 2E-06 32.9 7.3 69 165-240 59-132 (132) 26 >1cuo_A Protein (azurin ISO-2) 95.5 0.079 2.3E-06 32.4 7.6 75 164-241 16-129 (129) 27 >1qhq_A Protein (auracyanin); 94.8 0.2 6.1E-06 29.4 7.9 76 164-240 31-139 (140) 28 >1kdj_A Plastocyanin; electron 94.8 0.093 2.7E-06 31.9 6.1 73 165-240 16-102 (102) 29 >1byp_A Protein (plastocyanin) 94.7 0.18 5.3E-06 29.9 7.4 73 164-239 15-98 (99) 30 >1plc_A Plastocyanin; electron 94.7 0.21 6.3E-06 29.3 7.7 70 165-239 16-98 (99) 31 >1sdd_B Coagulation factor V; 93.4 0.38 1.1E-05 27.6 7.0 81 162-243 48-142 (149) 32 >2j5w_A Ceruloplasmin, ferroxi 92.1 0.38 1.1E-05 27.6 5.5 79 164-243 57-146 (151) 33 >2plt_A Plastocyanin; electron 91.9 0.62 1.8E-05 26.0 6.5 70 165-239 17-97 (98) 34 >2gim_A Plastocyanin; beta she 91.7 0.76 2.2E-05 25.4 6.7 74 164-240 18-105 (106) 35 >1mzy_A Copper-containing nitr 91.5 0.66 2E-05 25.8 6.2 79 164-242 64-160 (174) 36 >1mzy_A Copper-containing nitr 91.3 1 3E-05 24.5 7.0 81 164-244 62-155 (159) 37 >3cvb_A Plastocyanin; cupredox 90.4 0.75 2.2E-05 25.4 5.6 73 165-240 18-104 (105) 38 >1zpu_A Iron transport multico 85.2 2.6 7.8E-05 21.6 7.4 78 165-243 72-186 (193) 39 >1pcs_A Plastocyanin; electron 85.1 2.7 7.9E-05 21.5 7.8 71 164-239 17-97 (98) 40 >1oe1_A Dissimilatory copper-c 83.8 3 8.9E-05 21.1 6.9 80 165-244 64-155 (159) 41 >3g5w_A Multicopper oxidase ty 83.6 3.1 9E-05 21.1 7.1 75 166-241 48-140 (160) 42 >2zwn_A Two-domain type laccas 81.8 3.6 0.00011 20.6 5.8 74 165-239 47-138 (159) 43 >1kbv_A ANIA, major outer memb 80.0 4.1 0.00012 20.2 6.1 81 163-243 67-158 (160) 44 >2ccw_A Azurin II, AZN-2; elec 79.8 4.1 0.00012 20.2 5.1 74 164-240 17-128 (129) 45 >2j5w_A Ceruloplasmin, ferroxi 78.8 4.4 0.00013 20.0 5.3 79 165-244 63-155 (159) 46 >1sdd_A Coagulation factor V; 77.8 0.37 1.1E-05 27.6 -0.8 79 165-244 34-123 (126) 47 >1hfu_A Laccase 1; oxidoreduct 76.3 5.1 0.00015 19.5 6.4 65 165-229 48-131 (169) 48 >1nwp_A Azurin; electron trans 75.1 5.5 0.00016 19.3 8.1 73 164-239 17-127 (128) 49 >2r7e_A Coagulation factor VII 74.7 1.8 5.2E-05 22.8 2.0 78 165-243 61-149 (178) 50 >2r7e_A Coagulation factor VII 74.1 5.3 0.00016 19.4 4.4 77 166-243 56-143 (166) 51 >2zoo_A Probable nitrite reduc 68.5 7.7 0.00023 18.3 7.2 80 164-243 58-148 (149) 52 >1oe1_A Dissimilatory copper-c 68.4 7.7 0.00023 18.2 7.0 81 163-243 63-161 (177) 53 >1gsk_A COTA, spore coat prote 67.3 8.1 0.00024 18.1 9.9 80 164-244 42-160 (160) 54 >2cal_A Rusticyanin; iron resp 65.2 8.8 0.00026 17.8 8.7 73 166-239 61-153 (154) 55 >2r7e_B Coagulation factor VII 64.8 3 8.9E-05 21.1 1.5 67 165-231 63-143 (154) 56 >1jer_A Cucumber stellacyanin; 64.2 8 0.00024 18.1 3.5 90 164-256 26-123 (138) 57 >1kbv_A ANIA, major outer memb 62.4 9.9 0.00029 17.5 6.2 78 164-241 52-147 (167) 58 >2iaa_C Azurin; quinoprotein, 58.5 11 0.00034 17.0 7.6 73 165-240 17-127 (128) 59 >2uxt_A Protein SUFI, SUFI; pe 58.4 11 0.00032 17.2 3.4 79 165-244 34-132 (139) 60 >2j5w_A Ceruloplasmin, ferroxi 58.0 12 0.00035 17.0 5.2 76 164-240 72-158 (165) 61 >2bw4_A Copper-containing nitr 55.2 13 0.00038 16.6 12.1 80 164-243 69-160 (165) 62 >2dv6_A Nitrite reductase; ele 53.5 14 0.00041 16.5 12.3 83 161-243 44-137 (139) 63 >1aoz_A Ascorbate oxidase; oxi 53.2 14 0.00041 16.4 4.7 64 166-229 76-159 (182) 64 >2oa4_A SIR5; structure, struc 49.9 16 0.00046 16.1 3.8 35 239-273 61-96 (101) 65 >2zoo_A Probable nitrite reduc 49.7 16 0.00046 16.1 6.8 77 165-241 54-148 (167) 66 >2uxt_A Protein SUFI, SUFI; pe 49.5 16 0.00046 16.0 6.3 69 167-235 48-136 (167) 67 >2jrt_A Uncharacterized protei 48.9 14 0.00041 16.4 2.7 34 239-272 60-94 (95) 68 >1npb_A Fosfomycin-resistance 47.6 17 0.0005 15.8 3.7 31 229-259 2-32 (58) 69 >1aoz_A Ascorbate oxidase; oxi 45.2 18 0.00054 15.6 3.3 50 193-243 168-217 (242) 70 >2c1i_A Peptidoglycan glcnac d 44.8 7.6 0.00023 18.3 0.8 22 152-173 13-42 (48) 71 >2rbb_A Glyoxalase/bleomycin r 41.5 21 0.00061 15.2 3.6 35 225-259 1-35 (73) 72 >2bze_A KIAA0252 protein; huma 39.4 22 0.00066 15.0 5.5 78 175-261 55-137 (153) 73 >1pgs_A Peptide-N(4)-(N-acetyl 39.3 19 0.00056 15.5 2.1 33 201-233 38-78 (177) 74 >3cg8_A Laccase; oxidoreductas 39.1 22 0.00066 14.9 2.6 78 165-243 24-124 (159) 75 >2q9o_A Laccase-1; multicopper 35.9 25 0.00074 14.6 6.1 60 166-225 55-133 (175) 76 >3d7a_A UPF0201 protein PH1010 33.3 8.8 0.00026 17.8 -0.4 107 153-259 11-137 (138) 77 >2auw_A Hypothetical protein N 30.6 26 0.00076 14.5 1.6 14 240-253 1-14 (81) 78 >1poi_A Glutaconate coenzyme A 29.8 30 0.00087 14.1 1.9 14 238-251 23-36 (40) 79 >2knc_A Integrin alpha-IIB; tr 28.0 33 0.00098 13.7 5.6 23 52-74 13-35 (54) 80 >3c2u_A Xylosidase/arabinosida 27.6 28 0.00083 14.2 1.4 83 147-235 17-101 (214) 81 >1waz_A MERF; protein structur 27.6 34 0.001 13.7 2.8 15 65-79 32-46 (46) 82 >1zpu_A Iron transport multico 27.3 34 0.001 13.6 4.3 58 166-223 50-125 (169) 83 >2jhp_A VP4 core protein; guan 26.6 32 0.00094 13.9 1.5 30 65-94 144-174 (187) 84 >2qt6_A Laccase; beta barrel, 26.4 35 0.001 13.5 6.3 74 165-238 49-142 (166) 85 >2cb8_A Acyl-COA-binding prote 26.2 36 0.0011 13.5 3.9 49 240-291 1-52 (87) 86 >2fjl_A 1-phosphatidylinositol 25.2 37 0.0011 13.4 3.2 31 227-257 22-52 (54) 87 >2qt6_A Laccase; beta barrel, 24.2 39 0.0011 13.3 4.1 55 189-244 117-171 (175) 88 >2jdj_A HAPK, REDY-like protei 24.0 39 0.0012 13.2 1.6 14 240-253 14-27 (105) 89 >2kjz_A ATC0852; protein of un 23.1 41 0.0012 13.1 4.0 31 230-260 4-34 (63) 90 >2phl_A Phaseolin; plant SEED 21.7 43 0.0013 12.9 2.3 39 166-204 103-141 (202) 91 >2q9o_A Laccase-1; multicopper 21.7 43 0.0013 12.9 3.9 49 194-243 140-188 (190) 92 >2j5l_A Apical membrane antige 21.2 23 0.00069 14.8 0.0 23 168-190 311-335 (581) 93 >1kv7_A CUEO, probable blue-co 21.1 44 0.0013 12.8 3.6 63 164-226 83-169 (181) 94 >3bqx_A Glyoxalase-related enz 21.0 45 0.0013 12.8 2.3 29 231-259 3-31 (61) 95 >1ws8_A Mavicyanin; oxidized f 20.7 45 0.0013 12.8 5.0 34 207-243 71-106 (109) 96 >2bh9_A G6PD, glucose-6-phosph 20.4 46 0.0014 12.7 5.0 62 258-319 86-154 (178) No 1 >>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} (A:) Probab=100.00 E-value=0 Score=414.41 Aligned_cols=201 Identities=38% Similarity=0.717 Sum_probs=190.5 Q ss_pred HHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCC Q ss_conf 77513444200001244678888866899999843699996267877430689636982899998358101102201074 Q gi|254780474|r 117 THRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAG 196 (332) Q Consensus 117 ~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~ 196 (332) |+.|+|++|+ ..++++++|+|+|+||+|.|+||++++.++|+|+||+|+||+|+|||.|||||||||+|++ T Consensus 1 T~a~~~~~~~---------~~~~~~l~I~v~g~qW~W~f~Yp~~~~~~~n~l~iP~~~~V~~~ltS~DViHsF~iP~l~~ 71 (205) T 1cyx_A 1 THALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGS 71 (205) T ss_dssp -----------------------CCEEEEEEEETTEEEEEETTTTEEEESEEEEETTSCEEEEEEESSSCEEEEEGGGTE T ss_pred CCCCCCCCCC---------CCCCCCEEEEEEEEECEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHH T ss_conf 9778989988---------8899988999999944089880899964011388506976899997687411243432210 Q ss_pred EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCC Q ss_conf 031169851489999427748966613326576113658999708-899999999986072456-989999976102126 Q gi|254780474|r 197 QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERD 274 (332) Q Consensus 197 k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~ 274 (332) |+|+||||.|++||+++++|+|+|+|+||||.|||.|+|+|+|++ +++|++|++++|+.+..+ +.++|+.++.|++.+ T Consensus 72 k~daiPG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs~M~~~v~vv~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (205) T 1cyx_A 72 QIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYN 151 (205) T ss_dssp EEEECTTCCEEEEECCSSSEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCSCCBCSHHHHHHHHSCCSSC T ss_pred EECCCCCCCEEEEECCCCCCCEEEEEHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC T ss_conf 01006996047764047764306862112060223583699998999999999999763832354256899987776647 Q ss_pred CCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHHH Q ss_conf 3217204783542687315244488566021024666885234401100112 Q gi|254780474|r 275 SVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIY 326 (332) Q Consensus 275 ~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~~ 326 (332) +.+|++++.|+||+.+++++++.|+.+.+..+..++.++.+|+++|+...+. T Consensus 152 ~~~~~~~~~p~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~ 203 (205) T 1cyx_A 152 QVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAES 203 (205) T ss_dssp CCEEESCBCTTHHHHHHTTTC------------------------------- T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 6126613581357789998753486655777412444468998736333334 No 2 >>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} (B:119-315) Probab=100.00 E-value=0 Score=410.95 Aligned_cols=192 Identities=40% Similarity=0.741 Sum_probs=183.8 Q ss_pred CCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECC Q ss_conf 78888866899999843699996267877430689636982899998358101102201074031169851489999427 Q gi|254780474|r 135 IAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNK 214 (332) Q Consensus 135 ~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~ 214 (332) .++++++++|+|+|+||+|+|+||+++++++|+|+||+|+||+|+|||+|||||||||+|++|+|+||||+|++|+++++ T Consensus 2 ~~~~~~~l~V~V~g~qW~W~f~Yp~~~~~t~n~l~iP~~~~v~~~ltS~DViHsF~vP~l~~k~daiPG~~~~~~~~~~~ 81 (197) T 1fft_B 2 LAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANE 81 (197) T ss_dssp CCCCSCCCEEEEECCTTSCEEECTTTCCEEESBCCCCSSSEEEEEECBSSSCEEEEEGGGTEEEEECBTSCEEEEEECCS T ss_pred CCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEEECCCHHHEEEEHHHCCEEECCCCEEEEEEEECCC T ss_conf 77899986999999875689964888853023387304761699996597023042231086245169815899998289 Q ss_pred CEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHC Q ss_conf 748966613326576113658999708-899999999986072456-989999976102126321720478354268731 Q gi|254780474|r 215 KGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILN 292 (332) Q Consensus 215 ~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~ 292 (332) +|+|+|+|+||||.|||.|+|+|+|+| +++|++|++++|+++..+ +.+.|+.++.|+..+++++++++.|+||+.+++ T Consensus 82 ~G~y~g~CaE~CG~~Hs~M~~~v~vvs~~~~f~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~~~~ 161 (197) T 1fft_B 82 PGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVIN 161 (197) T ss_dssp CBCCEEBCCSCCSTTTTTCCEECCBCSSTHHHHHHHHHHHHCSCCBCCHHHHHHHTSSCSSCCSEEESCBCTTHHHHHHH T ss_pred CEEEEEEEHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHH T ss_conf 88999981100370603342479998588999999998660886666799999986776568843012679733899999 Q ss_pred CCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHHH Q ss_conf 5244488566021024666885234401100112 Q gi|254780474|r 293 LCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIY 326 (332) Q Consensus 293 ~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~~ 326 (332) ++++.|..+.+..+..+..++.+|+++|+...+. T Consensus 162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~ 195 (197) T 1fft_B 162 KFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAES 195 (197) T ss_dssp HTTC------------------------------ T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9714887778876321113579999878774322 No 3 >>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* (B:137-298) Probab=100.00 E-value=2.6e-43 Score=327.32 Aligned_cols=127 Identities=23% Similarity=0.432 Sum_probs=117.3 Q ss_pred CCCCEEEEEEEEEEEEEEEECCC------------------------CCCCCEEEEEECCCEEEEEEEECCCCHHCCCHH Q ss_conf 88866899999843699996267------------------------877430689636982899998358101102201 Q gi|254780474|r 138 NSKPLVVEVVALDWKWLFLLPEQ------------------------QVAIINELVVPIDRPLEFRITASSVMNSFYIPG 193 (332) Q Consensus 138 ~~~~l~I~V~a~qW~W~F~YP~~------------------------giatvneL~lPv~~pV~f~ltS~DViHSF~IP~ 193 (332) ++++++|+|+|+||+|.|+||+. ...+.|+|+||+|+||+|++||.|||||||||+ T Consensus 1 ~~p~l~V~v~g~QW~W~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~lvlP~~~~v~~~ltS~DViHsf~vP~ 80 (162) T 3hb3_B 1 NDPDLVIKAIGHQWYWSYEYPNDGVAFDALMLEKEALADAGYSEDEYLLATDNPVVVPVGKKVLVQVTATDVIHAWTIPA 80 (162) T ss_dssp SSCSEEEEEEEETTEEEEEETTTTEEEEECBCCGGGHHHHTCCGGGTTTCBSSCEEEESSSEEEEEEEESSSCEEEEEGG T ss_pred CCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCHHHHHCCC T ss_conf 99877999874142146765402245531135402202457667644446576499851546899998074012321141 Q ss_pred HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 07403116985148999942774896661332657611365899970889999999998607245698999 Q gi|254780474|r 194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEY 264 (332) Q Consensus 194 l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l~~~~y 264 (332) ||+|+||||||.|++||+++++|+|+|+|+||||.|||.|+|+|+|+++++|++|++++|+.......+.. T Consensus 81 l~~K~DaiPG~~~~~~~~~~~~G~y~g~CaElCG~~Hs~M~~~v~vvs~~~f~~Wi~~~~~~~~~~~~~~~ 151 (162) T 3hb3_B 81 FAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWLAGAKEEFAADASDYL 151 (162) T ss_dssp GTEEEEECTTCCEEEEEECSSSEEEEECCCSCCSTTTTSCCEEEEEECHHHHHHHHHHHHHHTBC------ T ss_pred CCCEEECCCCCCEEEEEEECCCEEEEEECHHHHCHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 15243336886258999958977899988776086366991699997899999999986765143740003 No 4 >>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} (B:103-262) Probab=100.00 E-value=2.9e-42 Score=319.80 Aligned_cols=120 Identities=19% Similarity=0.427 Sum_probs=113.0 Q ss_pred CCCCEEEEEEEEEEEEEEEECCC--------------------------------------CCCCCEEEEEECCCEEEEE Q ss_conf 88866899999843699996267--------------------------------------8774306896369828999 Q gi|254780474|r 138 NSKPLVVEVVALDWKWLFLLPEQ--------------------------------------QVAIINELVVPIDRPLEFR 179 (332) Q Consensus 138 ~~~~l~I~V~a~qW~W~F~YP~~--------------------------------------giatvneL~lPv~~pV~f~ 179 (332) .+++++|+|+|+||+|.|+||+. .+.+.|+|+||+|+||+|+ T Consensus 3 ~~p~~tV~v~G~QW~W~f~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lP~~~~v~~~ 82 (160) T 2gsm_B 3 PEADVTVKVTGYQWYWGYEYPDEEISFESYMIGSPATGGDNRMSPEVEQQLIEAGYSRDEFLLATDTAMVVPVNKTVVVQ 82 (160) T ss_dssp CCCSEEEEEEEETTEEEEEETTTTEEEEECBTTSGGGTCCSSCCHHHHHHHHHTTCCGGGTTTCBSSCEEEETTSEEEEE T ss_pred CCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEE T ss_conf 99976899888761342136644454333024775546543358402544300245565434155771898169878688 Q ss_pred EEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCC Q ss_conf 983581011022010740311698514899994277489666133265761136589997088999999999860724 Q gi|254780474|r 180 ITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGT 257 (332) Q Consensus 180 ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~ 257 (332) +||.|||||||||+||+|+||||||.|+++++++++|+|+|+|+||||.|||.|+|+|+|+++++|++|++++|+.++ T Consensus 83 itS~DViHsF~vP~l~~K~DaiPG~~~~~~~~~~~~G~y~g~C~E~CG~~Hs~M~~~V~vv~~~~f~~W~~~~~~~~~ 160 (160) T 2gsm_B 83 VTGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQHHHHHH 160 (160) T ss_dssp EEESSSCEEEEEGGGTEEEEECBTCCEEEEEECCSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHHHCCC-- T ss_pred EECCCCCCCCCCCCCCCEEEEECCEEEEEEEEECCCEEEEEECHHHCCHHHCCCCEEEEEECHHHHHHHHHHHCCCCC T ss_conf 861741343134535726762088069999994897679998667508636799169999889999999964543479 No 5 >>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (B:92-227) Probab=100.00 E-value=4.6e-42 Score=318.42 Aligned_cols=113 Identities=20% Similarity=0.414 Sum_probs=108.1 Q ss_pred CCEEEEEEEEEEEEEEEECCCCCC---------------------CCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEE Q ss_conf 866899999843699996267877---------------------43068963698289999835810110220107403 Q gi|254780474|r 140 KPLVVEVVALDWKWLFLLPEQQVA---------------------IINELVVPIDRPLEFRITASSVMNSFYIPGLAGQI 198 (332) Q Consensus 140 ~~l~I~V~a~qW~W~F~YP~~gia---------------------tvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~ 198 (332) ++++|+|+|+||+|.|+||+.++. +.|+|++|+|+||+|.+||+|||||||||+||+|+ T Consensus 2 p~~~I~v~g~Qw~W~f~Yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lP~~~~v~~~itS~DViHSf~vP~l~~K~ 81 (136) T 1v54_B 2 PSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKT 81 (136) T ss_dssp CSEEEEEEEETTEEEEEECSSSCEEEEECBCCGGGCCTTCCTTTCBSSCEEEETTSCEEEEEEESSSCEEEEEGGGTEEE T ss_pred CCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHCCEEE T ss_conf 86437862105333346246666645566674300055865311256846984365899999847531014443065554 Q ss_pred CCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHH Q ss_conf 116985148999942774896661332657611365899970889999999998 Q gi|254780474|r 199 YAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKV 252 (332) Q Consensus 199 daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ 252 (332) ||||||.|.+|++++++|+|+|+|+||||.|||.|+|+|+|+++++|++|++++ T Consensus 82 DaiPG~~~~~~~~~~~~G~y~g~C~ElCG~~Hs~M~~~V~vv~~~~f~~W~~~q 135 (136) T 1v54_B 82 DAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASM 135 (136) T ss_dssp EECTTCCEEEEECCSSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHHT T ss_pred EHHCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHHHH T ss_conf 410483666999907978999986765073035890799998899999999955 No 6 >>1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} (B:55-168) Probab=99.98 E-value=6.3e-34 Score=260.54 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=88.1 Q ss_pred EEEEEEEEEEECC----------------CCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEE Q ss_conf 9984369999626----------------787743068963698289999835810110220107403116985148999 Q gi|254780474|r 147 VALDWKWLFLLPE----------------QQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHA 210 (332) Q Consensus 147 ~a~qW~W~F~YP~----------------~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~ 210 (332) +|+||+|.|.||+ .+..+.|+|++|+|+||+|.+||+|||||||||+||+|+|||||++|++|| T Consensus 4 ig~qw~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~iP~g~~V~~~ltS~DViHsF~ip~~~~k~daiPG~~~~~~f 83 (114) T 1xme_B 4 VRQEGPWADPAQAVVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEVLPGEVSTVRY 83 (114) T ss_dssp TTTSSTTTCGGGSEEECSSSEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEECBTBCEEEEE T ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCEEEEEEEECCCCCCEEECCCCCEEEECCCCEEEEEE T ss_conf 86355023557764457898699999986045678889995899999999918754301011347214552786379999 Q ss_pred EECCCEEEEEECCCCCCCCCCCCEEEEEECC Q ss_conf 9427748966613326576113658999708 Q gi|254780474|r 211 VMNKKGAYSGFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 211 ~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s 241 (332) +|+++|+|+|+|+||||+|||.|+++++|+| T Consensus 84 ~~~~~G~y~~~C~e~CG~~H~~M~~~v~V~s 114 (114) T 1xme_B 84 TFKRPGEYRIICNQYCGLGHQNMFGTIVVKE 114 (114) T ss_dssp ECCSCEEEEEECCSCCSTTGGGCEEEEEEEC T ss_pred EECCCEEEEEECHHHCCCCCCCCEEEEEEEC T ss_conf 9599889999953543848036806999979 No 7 >>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} (A:) Probab=99.97 E-value=9.8e-33 Score=252.10 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=97.9 Q ss_pred CCCCCEEEEEEEEEEEEEEEECCCCC----------------CCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECC Q ss_conf 88886689999984369999626787----------------74306896369828999983581011022010740311 Q gi|254780474|r 137 KNSKPLVVEVVALDWKWLFLLPEQQV----------------AIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYA 200 (332) Q Consensus 137 ~~~~~l~I~V~a~qW~W~F~YP~~gi----------------atvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~da 200 (332) ...+++.|.+++.||+|.|.||+... -+.|++++|+|+||+|++||.|||||||||+|++|+|+ T Consensus 15 ~~~~~~~v~~~~~qw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~lp~g~~V~~~ltS~DViHsF~ip~~~ik~d~ 94 (135) T 2cua_A 15 GKLERVDPTTVRQEGPWADPAQAVVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEV 94 (135) T ss_dssp CSCCBCCTTTTTTSSTTTCGGGCEEEEETTEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEE T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCEEEEECCCEEEEEEEECCCEEECEECCCCCEEEE T ss_conf 62014580130245887765567583699979999999962217878999689999999992871251355377832545 Q ss_pred CCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC Q ss_conf 69851489999427748966613326576113658999708 Q gi|254780474|r 201 MAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 201 iPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s 241 (332) |||++|+++|++++||+|+|+|+||||+||+.|+|+++|+| T Consensus 95 iPG~~~~~~~~~~~pG~y~~~C~e~CG~gH~~M~~~v~v~s 135 (135) T 2cua_A 95 LPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGTIVVKE 135 (135) T ss_dssp CBTBCEEEEEECCSCEEEEEECCSCCSTTSTTCEEEEEEEC T ss_pred ECCCEEEEEEECCCCEEEEEECHHHCCCCCCCCEEEEEEEC T ss_conf 04431679986278879999941413968205807999979 No 8 >>1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} (A:453-581) Probab=99.95 E-value=2.9e-27 Score=213.25 Aligned_cols=98 Identities=9% Similarity=0.039 Sum_probs=86.9 Q ss_pred EEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEE----CCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEE Q ss_conf 999998436999962678774306896369828999983----5810110220107403116985148999942774896 Q gi|254780474|r 144 VEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITA----SSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYS 219 (332) Q Consensus 144 I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS----~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~ 219 (332) ..+....+.|.+.++..+..+.|++++|+|+||+|.+|| +|||||||||+||+|+||+||+.|++||+++++|+|. T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~pv~~~vt~~~~s~DViHsf~vp~~~~k~daiPG~~~~~~f~~~~~G~y~ 106 (129) T 1qni_A 27 KVIRDGNKVRVYMTSVAPQYGMTDFKVKEGDEVTVYITNLDMVEDVTHGFCMVNHGVSMEISPQQTASVTFTAGKPGVYW 106 (129) T ss_dssp CEEEETTEEEEEEEEETTEESCSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEEEEECTTCEEEEEEECCSSEEEE T ss_pred CEEECCCEEEEEEEEECCCCCCCEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCCCH T ss_conf 55978989999999956755787479889999999993577663577614655887866989997168999899995410 Q ss_pred EECCCCCCCCCCCCEEEEEECC Q ss_conf 6613326576113658999708 Q gi|254780474|r 220 GFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 220 G~cae~cG~ghs~M~f~v~v~s 241 (332) |+|+||||.||+.|+++++|++ T Consensus 107 ~~CaE~CG~~H~~M~~~v~VvP 128 (129) T 1qni_A 107 YYCNWFCHALHMEMVGRMLVEA 128 (129) T ss_dssp EECCSCCSTTGGGCEEEEEEEC T ss_pred HHHHHHHHHHHHHHEEEEEEEC T ss_conf 6631342688775425699841 No 9 >>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} (A:) Probab=99.94 E-value=1.6e-26 Score=207.89 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=82.1 Q ss_pred CCEEEEEEEEEEEEE-EEECCCCCCCCEEEEEECCCEEEEEEEEC-CCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEE Q ss_conf 866899999843699-99626787743068963698289999835-8101102201074031169851489999427748 Q gi|254780474|r 140 KPLVVEVVALDWKWL-FLLPEQQVAIINELVVPIDRPLEFRITAS-SVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGA 217 (332) Q Consensus 140 ~~l~I~V~a~qW~W~-F~YP~~giatvneL~lPv~~pV~f~ltS~-DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~ 217 (332) +...++..+.++.+. ..+ +....+.|+|++|+|+||+|.|||. |||||||||+|++|+||+||+.|+++++++++|+ T Consensus 12 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~l~vp~g~~V~~~lTs~~DViHsF~vp~~~ik~daiPG~~~~~~~~~~~~G~ 90 (112) T 1iby_A 12 DTTIPELNVEGVTVKNIRA-FNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKAGETKTISFTADKAGA 90 (112) T ss_dssp EEEEEEEEETTEEEEEEEE-EEEEEESCEEEEETTCEEEEEEEECSSSCEEEEEGGGTEEEEECTTCEEEEEEECCSCEE T ss_pred CCCCCCCCCCCCEEEEEEE-EEEEECCCEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCE T ss_conf 5646532657705663797-663418998998799999999996998717789727565333369953268998145736 Q ss_pred EEEECCCCCCCCCCCCEEEEE Q ss_conf 966613326576113658999 Q gi|254780474|r 218 YSGFSANYSGRGFSHMRFKFY 238 (332) Q Consensus 218 y~G~cae~cG~ghs~M~f~v~ 238 (332) |+|+|+||||.||..|.++|+ T Consensus 91 y~g~C~E~CG~~Hm~m~i~VV 111 (112) T 1iby_A 91 FTIWCQLHPKNIHLPGTLNVV 111 (112) T ss_dssp EEEBCSSSCTTTBCCEEEEEE T ss_pred EEEECCCCCHHHCCEEEEEEE T ss_conf 999885167441685899996 No 10 >>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} (A:45-81,A:463-595) Probab=99.85 E-value=5e-21 Score=168.83 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=86.9 Q ss_pred CCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC----CCHHCCCHHHCCEECCCCCCCEEEEEEE Q ss_conf 888866899999843699996267877430689636982899998358----1011022010740311698514899994 Q gi|254780474|r 137 KNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS----VMNSFYIPGLAGQIYAMAGMETKLHAVM 212 (332) Q Consensus 137 ~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D----ViHSF~IP~l~~k~daiPG~~t~l~~~a 212 (332) .+.+...|.+++.+|.| ..+++++|+|.+|.|.|||.| |+|+|+||++++|+|++||++++++|+| T Consensus 69 ~~~~~~~V~~~~~~~~~----------~~~~i~V~~Gd~V~i~ltN~d~~~dv~Hgf~Ip~~~v~~di~PG~~~~~~F~a 138 (170) T 1fwx_A 69 RDGNKVRVYMSSVAPSF----------SIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVA 138 (170) T ss_dssp EETTEEEEEEEEETTEE----------SCSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEEEEECTTCEEEEEEEC T ss_pred ECCCEEEEEEEEECCCC----------CCEEEEECCCCEEEEEECCCCHHHHCCCCEEEECCCEEEEECCCCEEEEEEEC T ss_conf 55856899999504656----------83478874698899998141032201252366235243576688444699973 Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEEECCHHH Q ss_conf 27748966613326576113658999708899 Q gi|254780474|r 213 NKKGAYSGFSANYSGRGFSHMRFKFYGKSEKG 244 (332) Q Consensus 213 ~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~ 244 (332) +++|+|.++|+||||.+|+.|++.++|++++. T Consensus 139 ~~pG~y~~~C~e~Cg~~H~~M~G~iiV~p~ea 170 (170) T 1fwx_A 139 ANPGVYWYYCQWFCHALHMEMRGRMLVEPKEA 170 (170) T ss_dssp CSCEEEEEECCSCCSTTCTTCEEEEEEECC-- T ss_pred CCCCCCHHHHHHHHHHHHHHHHCEEEECCCCC T ss_conf 68862101777888898897624153044779 No 11 >>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* (B:1-136) Probab=99.39 E-value=1.5e-12 Score=108.52 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=78.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH Q ss_conf 32689898999999999999999999999999999999885304677777787534566125530227899999999999 Q gi|254780474|r 34 IVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVIT 113 (332) Q Consensus 34 ~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~t 113 (332) ...||.+|+++++..++..+..++.+|++.|..+++|+.++||++++ ..+.+..||+.+|++||++|++|+++|++++ T Consensus 48 ~fqd~~Sp~me~i~~fHd~~m~i~~~I~~~V~~~~~~~~~~~~~~~~--~~~~~~~~n~~lEiiWTiiP~lILi~la~PS 125 (136) T 3hb3_B 48 NFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRAN--PVPARFTHNTPIEVIWTLVPVLILVAIGAFS 125 (136) T ss_dssp SCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTS--SSCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 89898898999999999999999999999999999999999826688--8753235775267899999999999999988 Q ss_pred HHHHHHHC Q ss_conf 98877513 Q gi|254780474|r 114 WDATHRMD 121 (332) Q Consensus 114 ~~~~~~ld 121 (332) .+..+.+| T Consensus 126 l~lLYlmd 133 (136) T 3hb3_B 126 LPILFRSQ 133 (136) T ss_dssp HHHHHHHH T ss_pred HHHHHHHC T ss_conf 76554312 No 12 >>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} (A:) Probab=98.65 E-value=2.6e-07 Score=71.40 Aligned_cols=101 Identities=12% Similarity=-0.008 Sum_probs=89.7 Q ss_pred CEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC---CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEE Q ss_conf 66899999843699996267877430689636982899998358---101102201074031169851489999427748 Q gi|254780474|r 141 PLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS---VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGA 217 (332) Q Consensus 141 ~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D---ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~ 217 (332) .++|++++..|.+.+.||. +.|.++.|..|+|++++.+ +.|+|.+|..+.+....||.. ..++++++|+ T Consensus 2 ~~~v~~~~~~~~~~~~f~p------~~i~v~~Gd~V~~~~~n~~htvh~hg~~~~~~~~~~~~~~g~t--~~~~f~~~G~ 73 (123) T 1paz_A 2 NIEVHMLNKGAEGAMVFEP------AYIKANPGDTVTFIPVDKGHNVESIKDMIPEGAEKFKSKINEN--YVLTVTQPGA 73 (123) T ss_dssp EEEEEEEEEETTEEEEEES------SEEEECTTCEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCC--EEEECCSCEE T ss_pred CEEEEEEECCCCCCEEEEC------CEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCC--EEEECCCCEE T ss_conf 6899998779997579857------8899889998999989997237741675766532222246863--3796068806 Q ss_pred EEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHH Q ss_conf 96661332657611365899970889999999998 Q gi|254780474|r 218 YSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKV 252 (332) Q Consensus 218 y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ 252 (332) |...|...|+.| |...++|.++++...+..+. T Consensus 74 ~~y~C~~h~~~G---M~G~i~V~~~~~~~~~~~~~ 105 (123) T 1paz_A 74 YLVKCTPHYAMG---MIALIAVGDSPANLDQIVSA 105 (123) T ss_dssp EEEECTTTGGGT---CEEEEEESSSCTTHHHHHHS T ss_pred EEEECCCCCCCC---CEEEEEECCCCCCHHHHHHH T ss_conf 999815686789---78999999999898998753 No 13 >>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} (A:) Probab=98.52 E-value=5.9e-07 Score=68.85 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=93.0 Q ss_pred CEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC---CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEE Q ss_conf 66899999843699996267877430689636982899998358---101102201074031169851489999427748 Q gi|254780474|r 141 PLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS---VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGA 217 (332) Q Consensus 141 ~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D---ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~ 217 (332) .++|++++..|...+.||. ..|.+++|..|+|.+++++ +.|+|.+|..+.+....||.. ..++.+++|+ T Consensus 2 ~~~v~~~~~~~~~~~~f~p------p~i~v~~Gd~V~~~~~n~~h~ih~hg~~~~~~~~~~~~~pg~t--~~~~f~~~G~ 73 (123) T 1pmy_A 2 EVAVKMLNSGPGGMMVFDP------ALVRLKPGDSIKFLPTDKGHNVETIKGMAPDGADYVKTTVGQE--AVVKFDKEGV 73 (123) T ss_dssp EEEEEEEEEETTEEEEEES------SEEEECTTCEEEEECSSSSCCCEECTTSSCTTCCCCBCCTTSC--EEEECCSCEE T ss_pred CEEEEEEECCCCCCEEEEC------CEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCC--EEEECCCCCE T ss_conf 6999998648997479968------8899969998999878988633742567765444322353211--0475368817 Q ss_pred EEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCC Q ss_conf 966613326576113658999708899999999986072 Q gi|254780474|r 218 YSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQG 256 (332) Q Consensus 218 y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~ 256 (332) |...|...|..| |...++|.++.+...+..++..+. T Consensus 74 ~~y~C~~h~~~G---M~G~i~V~~~~~~~~~~~~~~~~~ 109 (123) T 1pmy_A 74 YGFKCAPHYMMG---MVALVVVGDKRDNLEAAKSVQHNK 109 (123) T ss_dssp EEEECSTTTTTT---CEEEEEESSCCTTHHHHHTCCCCH T ss_pred EEEEECCCCCCC---CEEEEEECCCCCCHHHHHHHHCCH T ss_conf 999957786788---679999899987889997640332 No 14 >>3erx_A Pseudoazurin; copper protein, high-resolution,, copper, electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A (A:) Probab=98.41 E-value=2.5e-06 Score=64.37 Aligned_cols=103 Identities=12% Similarity=-0.045 Sum_probs=86.8 Q ss_pred EEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC---CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEE Q ss_conf 6899999843699996267877430689636982899998358---1011022010740311698514899994277489 Q gi|254780474|r 142 LVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS---VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAY 218 (332) Q Consensus 142 l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D---ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y 218 (332) .+|+++...-.+.+.|+. ++|.+++|.+|+|++++.+ ++|++..|.....+...||... .++.+++|+| T Consensus 3 ~~v~v~~~~~~~~~~f~p------~~i~v~~Gd~V~~~~~n~~h~~~~~~~~~~~~~~~~~~~pg~t~--~~~~~~~G~y 74 (123) T 3erx_A 3 HEVHMLNKGESGAMVFEP------AFVRAEPGDVINFVPTDKSHNVEAIKEILPEGVESFKSKINESY--TLTVTEPGLY 74 (123) T ss_dssp EEEEEEEEETTEEEEEES------SEEEECTTEEEEEEESSTTCCCEECTTSSCTTCCCCBCCTTCCE--EEEECSCEEE T ss_pred EEEEEEECCCCCCEEEEC------CEEEECCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCE--EEECCCCCEE T ss_conf 899987658997679837------98998799999983688875223256753334211023577406--8753689549 Q ss_pred EEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 6661332657611365899970889999999998607 Q gi|254780474|r 219 SGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQ 255 (332) Q Consensus 219 ~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~ 255 (332) ...|...|+.| |...++|.+++....+..+.... T Consensus 75 ~y~C~~H~~~G---M~G~i~V~~~~~~~~~~~~~~~~ 108 (123) T 3erx_A 75 GVKCTPHFGMG---MVGLVQVGDAPENLDAAKTAKMP 108 (123) T ss_dssp EEECGGGTTTT---CEEEEEESSSCTTHHHHHHCCCC T ss_pred EEEECCCCCCC---CEEEEEECCCCCCHHHHHHCCCC T ss_conf 99955278889---78999989999898898653460 No 15 >>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} (A:) Probab=98.19 E-value=4.4e-06 Score=62.65 Aligned_cols=85 Identities=15% Similarity=-0.012 Sum_probs=75.8 Q ss_pred CEEEEEECCCEEEEEEEECC---CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC Q ss_conf 30689636982899998358---101102201074031169851489999427748966613326576113658999708 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS---VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D---ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s 241 (332) -+.|.+++|.+|+|.+++.+ +.|+|.+|..+.+....||... .++++++|+|...|+..|..| |...++|.+ T Consensus 21 p~~i~v~~Gd~V~~~~~~~~h~v~~hg~~~~~~~~~~~~~pg~t~--~~~f~~~G~~~y~C~~H~~~G---M~g~i~V~~ 95 (124) T 3ef4_A 21 PGFVKVEAGDTVKFVPTDKSHNAESVREVWPEGVAPVKGGFSKEV--VFNAEKEGLYVLKCAPHYGMG---MVVLVQVGK 95 (124) T ss_dssp SSEEEECTTCEEEEECSSSSCCCEECTTTSCTTSCCCBCCTTCCE--EEECCSSEEEEEECTTTGGGT---CEEEEEESS T ss_pred CCEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCE--EEECCCCEEEEEEECCCCCCC---CEEEEEECC T ss_conf 887998899989997789887437415766666554455545002--344147747999802174689---789999999 Q ss_pred HHHHHHHHHHHHC Q ss_conf 8999999999860 Q gi|254780474|r 242 EKGFEDWISKVKR 254 (332) Q Consensus 242 ~~~f~~Wv~~~ka 254 (332) ++++++|..+... T Consensus 96 ~~~~~~~~~~~~~ 108 (124) T 3ef4_A 96 PVNLDQIKEYKAT 108 (124) T ss_dssp CTTHHHHHHSCCC T ss_pred CCCHHHHHHCCCC T ss_conf 8998999755351 No 16 >>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} (A:) Probab=97.70 E-value=0.00024 Score=50.34 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=73.7 Q ss_pred CCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEEC---CCCHHCCCHHHCCEECCCCCCCEEEEEEECC Q ss_conf 8886689999984369999626787743068963698289999835---8101102201074031169851489999427 Q gi|254780474|r 138 NSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITAS---SVMNSFYIPGLAGQIYAMAGMETKLHAVMNK 214 (332) Q Consensus 138 ~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~---DViHSF~IP~l~~k~daiPG~~t~l~~~a~~ 214 (332) .....++++++.+.. | .-++|.+++|.+|+|..++. +|.|.+.+...+...+..||......+++++ T Consensus 16 ~~~~~~v~i~~~~~~----f------~p~~i~v~~G~~V~~~n~~~~~h~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 85 (106) T 1id2_A 16 DVPADAVVVGIEKMK----Y------LTPEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNE 85 (106) T ss_dssp GSCTTCEEEEEETTE----E------SSSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECS T ss_pred CCCCCCEEEECCCCE----E------ECCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCC T ss_conf 688734798466798----9------799989899999999989999747998478887653333545899668897368 Q ss_pred CEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 74896661332657611365899970 Q gi|254780474|r 215 KGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 215 ~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) +|+|.-.|. .|..|+.+++|. T Consensus 86 ~G~y~~~C~-----~h~~M~G~iiV~ 106 (106) T 1id2_A 86 AGSYDYFCT-----PHPFMRGKVIVE 106 (106) T ss_dssp CEEEEEECS-----SCTTCEEEEEEC T ss_pred CCEEEEEEC-----CCCCCEEEEEEC T ss_conf 838999824-----899974999989 No 17 >>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus SP} (A:) Probab=97.18 E-value=0.002 Score=43.66 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=61.6 Q ss_pred CEEEEEECCCEEEEEEEEC---CCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 3068963698289999835---810110220107403116985148999942774896661332657611365899970 Q gi|254780474|r 165 INELVVPIDRPLEFRITAS---SVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~---DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) -.+|.+++|..|+|..++. ++.|.+..+........-||.. ..++.+++|+|...|+..|+.| |...+.|. T Consensus 18 p~~i~v~~Gd~V~~~n~~~~~h~v~~~~~~~~~~~~~~~~~g~~--~~~tf~~~G~y~y~C~~H~~~g---M~g~i~Ve 91 (91) T 1bxv_A 18 PSTIEIQAGDTVQWVNNKLAPHNVVVEGQPELSHKDLAFSPGET--FEATFSEPGTYTYYCEPHRGAG---MVGKIVVQ 91 (91) T ss_dssp SSEEEECTTCEEEEEECSSCCEEEEETTCGGGCEEEEECSTTCE--EEEECCSCEEEEEECTTTGGGT---CEEEEEEC T ss_pred CCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC--EEEEEECCCEEEEEECCCCCCC---CEEEEEEC T ss_conf 99999989999999989857702872365433234446379984--7999603976999957789999---88999989 No 18 >>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} (A:) Probab=97.12 E-value=0.0037 Score=41.83 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=62.1 Q ss_pred CCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC----CC-HHCCCHHHCCEECCCCCCCEEEEEE Q ss_conf 888866899999843699996267877430689636982899998358----10-1102201074031169851489999 Q gi|254780474|r 137 KNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS----VM-NSFYIPGLAGQIYAMAGMETKLHAV 211 (332) Q Consensus 137 ~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D----Vi-HSF~IP~l~~k~daiPG~~t~l~~~ 211 (332) .+....+|.|...+|.| .-++|.+|+|+.|+|..++.. +. |.+..+....+...-|| ....++ T Consensus 14 ~~~~~~~v~v~~~~~~f----------~p~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~g--~~~~~t 81 (105) T 2ov0_A 14 AEVADGAIVVDIAKMKY----------ETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKE--QAYSLT 81 (105) T ss_dssp GGCCTTCEEEEEETTEE----------SSSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTT--EEEEEE T ss_pred CCCCCCCEEEECCCCEE----------ECCEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCC--CEEEEE T ss_conf 54566215997124788----------499999889999999889989811898210267653456653689--617998 Q ss_pred ECCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 42774896661332657611365899970 Q gi|254780474|r 212 MNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 212 a~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) ++++|+|.-.|. .|..|+..++|. T Consensus 82 f~~pG~y~~~C~-----~h~~M~G~ivV~ 105 (105) T 2ov0_A 82 FTEAGTYDYHCT-----PHPFMRGKVVVE 105 (105) T ss_dssp ECSCEEEEEECS-----SCTTCEEEEEEC T ss_pred ECCCCEEEEEEC-----CCCCCEEEEEEC T ss_conf 406808999856-----889987999989 No 19 >>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} (A:) Probab=96.61 E-value=0.012 Score=38.23 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=59.9 Q ss_pred CEEEEEECCCEEEEEEEECC----CCHHCC-----CHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEE Q ss_conf 30689636982899998358----101102-----201074031169851489999427748966613326576113658 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS----VMNSFY-----IPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRF 235 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D----ViHSF~-----IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f 235 (332) -..|.+.+|..|+|.+++.. ..|++. .+.-+......||-...+.++++++|+|.-.|...|+.| |.. T Consensus 17 ~~~i~v~~Gd~V~~~n~~~~~h~~h~hg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~G~~~yhC~~H~~~G---M~G 93 (98) T 1iuz_A 17 PSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPGVYGVYCEPHAGAG---MKM 93 (98) T ss_dssp SSEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSCEEEEEECTTTGGGT---CEE T ss_pred CCEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCC---CEE T ss_conf 89999999999999999998620687067666676555545556556898569998889987999943675689---769 Q ss_pred EEEEC Q ss_conf 99970 Q gi|254780474|r 236 KFYGK 240 (332) Q Consensus 236 ~v~v~ 240 (332) .++|. T Consensus 94 ~i~Ve 98 (98) T 1iuz_A 94 TITVQ 98 (98) T ss_dssp EEEEC T ss_pred EEEEC T ss_conf 99989 No 20 >>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ... (A:) Probab=96.36 E-value=0.0055 Score=40.59 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=56.4 Q ss_pred CCEEEEEE-CCCEEEEEEEECC------CCHHCCCHHHCC----------------------------EECCCCCCCEEE Q ss_conf 43068963-6982899998358------101102201074----------------------------031169851489 Q gi|254780474|r 164 IINELVVP-IDRPLEFRITASS------VMNSFYIPGLAG----------------------------QIYAMAGMETKL 208 (332) Q Consensus 164 tvneL~lP-v~~pV~f~ltS~D------ViHSF~IP~l~~----------------------------k~daiPG~~t~l 208 (332) .-.++.+| .|.+|+|.++..+ ..|.|-++.-+. ..-..||...++ T Consensus 16 ~p~~i~V~k~G~tV~~~~~N~g~~~~~~~~Hn~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~~~ 95 (125) T 3fsa_A 16 NTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSV 95 (125) T ss_dssp SCSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEE T ss_pred CCCEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 37778996699889999996997853488624333476127999999976452014679886441000101077850599 Q ss_pred EEEE---CCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 9994---2774896661332657611365899970 Q gi|254780474|r 209 HAVM---NKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 209 ~~~a---~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) .|++ +++|+|.-.| .+|+.|..+++|. T Consensus 96 tF~~~~~~~~G~Y~y~C-----~~H~gM~Gti~Ve 125 (125) T 3fsa_A 96 TFDVSKLKEGEQYMFFC-----AAHAAMKGTLTLK 125 (125) T ss_dssp EEEGGGC---CCEEEEC-----SSSTTCEEEEEEC T ss_pred EEEECCCCCCEEEEEEC-----CCCCCCEEEEEEC T ss_conf 99834778888599979-----9865727999989 No 21 >>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A (A:) Probab=96.19 E-value=0.091 Score=31.92 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=60.1 Q ss_pred EEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEEC--CCCHHCCCHHHC-CEECCCCCCCEEEEEEECCCEEE Q ss_conf 689999984369999626787743068963698289999835--810110220107-40311698514899994277489 Q gi|254780474|r 142 LVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITAS--SVMNSFYIPGLA-GQIYAMAGMETKLHAVMNKKGAY 218 (332) Q Consensus 142 l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~--DViHSF~IP~l~-~k~daiPG~~t~l~~~a~~~G~y 218 (332) .+|+++..-..=.+.|+ -..|.++.|..|.|..++. ++.|.+..-..+ -..-.-||-. ..++.+++|+| T Consensus 3 ~~V~v~~~~~~~~~~f~------p~~i~v~~Gd~V~~~~~~~~h~~~~~~~~~~~~~~~~~~~pg~t--~~~tf~~~G~y 74 (122) T 2ux6_A 3 FEVHMLNKGKDGAMVFE------PASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINEN--YKVTFTAPGVY 74 (122) T ss_dssp EEEEEEEEETTEEEEEE------SSEEEECTTEEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCC--EEEEECSCEEE T ss_pred EEEEEEECCCCCCEEEE------CCEEEECCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCC--EEEECCCCEEE T ss_conf 49998776899766782------89899869999999989988640531324677655543234531--01114677179 Q ss_pred EEECCCCCCCCCCCCEEEEEECCHH Q ss_conf 6661332657611365899970889 Q gi|254780474|r 219 SGFSANYSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 219 ~G~cae~cG~ghs~M~f~v~v~s~~ 243 (332) .-.|. -|..|++.++|.++. T Consensus 75 ~~~C~-----iH~gM~g~i~V~~~~ 94 (122) T 2ux6_A 75 GVKCT-----PHPFMVGVVQVGDAP 94 (122) T ss_dssp EEEET-----TEEEEEEEEEESSSC T ss_pred EEEEC-----CCCCCEEEEEECCCC T ss_conf 99803-----788988999999999 No 22 >>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} (A:) Probab=95.89 E-value=0.073 Score=32.61 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=62.0 Q ss_pred EEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC----CCHHCCCHHH-----CCEECCCCCCCEEEEEEE Q ss_conf 6899999843699996267877430689636982899998358----1011022010-----740311698514899994 Q gi|254780474|r 142 LVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS----VMNSFYIPGL-----AGQIYAMAGMETKLHAVM 212 (332) Q Consensus 142 l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D----ViHSF~IP~l-----~~k~daiPG~~t~l~~~a 212 (332) ++|++..-+=.|.|.- +.|.+++|..|+|.++++. .+|++..|.. .......||- ...++. T Consensus 3 ~~v~v~~~~~~~~f~p--------~~i~v~~Gd~V~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~pg~--t~~~~f 72 (97) T 1b3i_A 3 VQIKMGTDKYAPLYEP--------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKLAIAPGS--FYSVTL 72 (97) T ss_dssp EEEEEEETTTEEEEES--------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCCCCSCSC--CEEEEC T ss_pred EEEEECCCCCCEEECC--------CEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC--EEEEEE T ss_conf 9999761898438819--------989998999999998998851279821787454443334555668984--699982 Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 2774896661332657611365899970 Q gi|254780474|r 213 NKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 213 ~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) +++|+|.-.|+.-|..| |...++|. T Consensus 73 ~~~G~~~y~C~~H~~~G---M~G~i~Ve 97 (97) T 1b3i_A 73 GTPGTYSFYCTPHRGAG---MVGTITVE 97 (97) T ss_dssp CSCSEEEEECSSTTTTT---CEEEEEEC T ss_pred CCCEEEEEEECCCCCCC---CEEEEEEC T ss_conf 38808999856786678---76999989 No 23 >>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} (A:) Probab=95.87 E-value=0.037 Score=34.76 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=53.4 Q ss_pred CCEEEEEECCCEEEEEEEECCC-C--------HHCCCHH-----------------------HCCEECCCCCCCEEEEEE Q ss_conf 4306896369828999983581-0--------1102201-----------------------074031169851489999 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSV-M--------NSFYIPG-----------------------LAGQIYAMAGMETKLHAV 211 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DV-i--------HSF~IP~-----------------------l~~k~daiPG~~t~l~~~ 211 (332) ..+.+.++.|..|++.++..+- + |.|.+-. ++...+.-||...++.|+ T Consensus 33 ~~~~~~v~~g~~v~~~l~N~~~~~~h~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~~i~pG~~~~~~f~ 112 (139) T 2aan_A 33 DKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVTFT 112 (139) T ss_dssp SCSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEEEE T ss_pred ECCEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEE T ss_conf 05779987999899999808975421788605765203566776542041014543344320001334567521799995 Q ss_pred ECCCEEEEEECCCCCCCCCCCCEEEEEE Q ss_conf 4277489666133265761136589997 Q gi|254780474|r 212 MNKKGAYSGFSANYSGRGFSHMRFKFYG 239 (332) Q Consensus 212 a~~~G~y~G~cae~cG~ghs~M~f~v~v 239 (332) +|++|+|.-.|.-.+=. +.|...++| T Consensus 113 ad~pG~~~~HChi~~H~--~GM~g~i~V 138 (139) T 2aan_A 113 APAAGTYLYICTVPGHY--PLMQGKLVV 138 (139) T ss_dssp CCSSEEEEEECCSTTTT--TTSEEEEEE T ss_pred CCCCEEEEEEECCCCCC--CCCEEEEEE T ss_conf 79985799997999932--165699998 No 24 >>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} (A:1-146) Probab=95.79 E-value=0.07 Score=32.76 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=74.6 Q ss_pred EEEEEEEEEEEEEEEECC--CCCCCCEEEEEECCCEEEEEEEE---CCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCE Q ss_conf 689999984369999626--78774306896369828999983---5810110220107403116985148999942774 Q gi|254780474|r 142 LVVEVVALDWKWLFLLPE--QQVAIINELVVPIDRPLEFRITA---SSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKG 216 (332) Q Consensus 142 l~I~V~a~qW~W~F~YP~--~giatvneL~lPv~~pV~f~ltS---~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G 216 (332) .+++.+...=...+.+-- .+...--.|++-.|..|++.++- ..-.|.|--+..+.+....||..-...|+++++| T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~gp~i~~~~Gd~v~v~l~N~~~~~~~~~~hg~~~~~~~~i~PG~t~~y~f~a~~~G 108 (146) T 2dv6_A 29 FTLRTGIAEGRMVYIGVGGDIDHKINPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVNGKNASSTFSFVASKVG 108 (146) T ss_dssp EEEEEEEETTEEEEEEESGGGTTCBSCCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBCSTTBEEEEEEECCSCE T ss_pred EEEEEECCCCCEEECCCCEEECCCCCCCEEECCCCEEEEEEECCCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCC T ss_conf 99874113562797355303689508857867899899999879985278983886542341389981589999559973 Q ss_pred EEEEECCCCCCCCCCCCEEEEEECCHH Q ss_conf 896661332657611365899970889 Q gi|254780474|r 217 AYSGFSANYSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 217 ~y~G~cae~cG~ghs~M~f~v~v~s~~ 243 (332) +|.-.|...| ...+.|...++|.+++ T Consensus 109 t~~yHch~~~-h~~~Gm~G~iiV~~~~ 134 (146) T 2dv6_A 109 EFNYYCSIAG-HRQAGMEGNIQVLPGN 134 (146) T ss_dssp EEEEECCSTT-HHHHTCEEEEEEESSC T ss_pred CEEEEEECCC-HHHCCCCCCCCCCCCC T ss_conf 6899993484-5437785300124455 No 25 >>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} (A:) Probab=95.55 E-value=0.066 Score=32.94 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=57.7 Q ss_pred CEEEEEECCCEEEEEEEEC-----CCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEE Q ss_conf 3068963698289999835-----81011022010740311698514899994277489666133265761136589997 Q gi|254780474|r 165 INELVVPIDRPLEFRITAS-----SVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYG 239 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~-----DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v 239 (332) -.+|.++.|..|+|+.++. +..|.+-.+....+...-||.. ...+++++|+|.-.|. -|..|..+++| T Consensus 59 p~~i~v~~Gd~V~~~~~n~~~h~~~~~~~~~~~~~~~~~~i~pg~t--~~~tf~~~G~y~y~C~-----~h~gM~G~iiV 131 (132) T 3c75_A 59 TPEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQA--YAITFNEAGSYDYFCT-----PHPFMRGKVIV 131 (132) T ss_dssp SSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEE--EEEEECSCEEEEEECS-----SCTTCEEEEEE T ss_pred CCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCE--EEEECCCCEEEEEEEC-----CCCCCEEEEEE T ss_conf 9999989999999998998850189626767754556667589974--8997789989999817-----98687799998 Q ss_pred C Q ss_conf 0 Q gi|254780474|r 240 K 240 (332) Q Consensus 240 ~ 240 (332) . T Consensus 132 ~ 132 (132) T 3c75_A 132 E 132 (132) T ss_dssp C T ss_pred C T ss_conf 9 No 26 >>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} (A:) Probab=95.55 E-value=0.079 Score=32.39 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=54.6 Q ss_pred CCEEEEEECC-CEEEEEEEECCCC------HHCCCHH----------------------------HCCEECCCCCCCEEE Q ss_conf 4306896369-8289999835810------1102201----------------------------074031169851489 Q gi|254780474|r 164 IINELVVPID-RPLEFRITASSVM------NSFYIPG----------------------------LAGQIYAMAGMETKL 208 (332) Q Consensus 164 tvneL~lPv~-~pV~f~ltS~DVi------HSF~IP~----------------------------l~~k~daiPG~~t~l 208 (332) ..++|.+++| ++|+|.++.++-+ |.|-+.+ +.......||....+ T Consensus 16 ~p~~i~v~~Gd~~v~i~~~N~~~~~h~~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~pGet~~~ 95 (129) T 1cuo_A 16 STRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSV 95 (129) T ss_dssp SCSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEE T ss_pred CCCEEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCHHHCCCCCCCCCCEEECCCCCCCCEEEE T ss_conf 17758992898379999997995764420256896164117789998876253225678664000210210289955899 Q ss_pred EEEE---CCCEEEEEECCCCCCCCC-CCCEEEEEECC Q ss_conf 9994---277489666133265761-13658999708 Q gi|254780474|r 209 HAVM---NKKGAYSGFSANYSGRGF-SHMRFKFYGKS 241 (332) Q Consensus 209 ~~~a---~~~G~y~G~cae~cG~gh-s~M~f~v~v~s 241 (332) .|++ +++|+|.-.|.- .|| +.|..+++|.. T Consensus 96 ~ft~~~~~~pG~Y~y~C~~---pgH~aGM~G~i~V~e 129 (129) T 1cuo_A 96 KFKVSALSKDEAYTYFCSY---PGHFSMMRGTLKLEE 129 (129) T ss_dssp EEEGGGCCTTSCEEEECCS---TTCTTTSEEEEEEEC T ss_pred EEEEECCCCCCEEEEEECC---CCCCCCCEEEEEEEC T ss_conf 9985525899449999499---985459789999939 No 27 >>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin- like, thermophIle; 1.55A {Chloroflexus aurantiacus} (A:) Probab=94.81 E-value=0.2 Score=29.44 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=55.5 Q ss_pred CCEEEEEECCCEEEEEEEECCC-CHHCCCH--------------------------------HHCCEECCCCCCCEEEEE Q ss_conf 4306896369828999983581-0110220--------------------------------107403116985148999 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSV-MNSFYIP--------------------------------GLAGQIYAMAGMETKLHA 210 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DV-iHSF~IP--------------------------------~l~~k~daiPG~~t~l~~ 210 (332) .-+.+.++.|+.|++.++-.+- .|.|-+- ..+-..+..||....+.| T Consensus 31 ~~~~~~v~~G~~v~~~l~N~~~~~h~~~~h~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~~i~pg~~~~~~f 110 (140) T 1qhq_A 31 AQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTF 110 (140) T ss_dssp SCSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEE T ss_pred ECCEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 06869987999999999888877357898725564157899988765311113456998520002462118984699999 Q ss_pred EECCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 942774896661332657611365899970 Q gi|254780474|r 211 VMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 211 ~a~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) +++++|+|.-.|.-.+ -....|...++|. T Consensus 111 ~~~~~G~~~~hCHi~~-H~~~GM~~~l~V~ 139 (140) T 1qhq_A 111 RTPAPGTYLYICTFPG-HYLAGMKGTLTVT 139 (140) T ss_dssp ECCSSEEEEEECCSTT-TTTTTCEEEEEEE T ss_pred ECCCCEEEEEECCCCC-HHHCCCEEEEEEC T ss_conf 6689816999869842-3033476899986 No 28 >>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} (A:) Probab=94.78 E-value=0.093 Score=31.88 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=55.6 Q ss_pred CEEEEEECCCEEEEEEEECC----CCHHCCCHHHCC----------EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC Q ss_conf 30689636982899998358----101102201074----------0311698514899994277489666133265761 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS----VMNSFYIPGLAG----------QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF 230 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D----ViHSF~IP~l~~----------k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh 230 (332) -+.|.+.+|..|+|.+++.. .+|.+..+..+. +-+..++-.....++++++|+|.-.|..-|..| T Consensus 16 ~~~i~v~~Gd~V~~~~~~~~~H~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~p~~t~~~~~~~~G~y~yhC~~H~~~G- 94 (102) T 1kdj_A 16 PDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYCTPHKSAN- 94 (102) T ss_dssp SSEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECCCSCEEEEEECSTTGGGT- T ss_pred CCEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCC- T ss_conf 9999988999999999999984189706787776544455667756555346897479999489867999958786579- Q ss_pred CCCEEEEEEC Q ss_conf 1365899970 Q gi|254780474|r 231 SHMRFKFYGK 240 (332) Q Consensus 231 s~M~f~v~v~ 240 (332) |...++|. T Consensus 95 --M~G~ivVe 102 (102) T 1kdj_A 95 --MKGTLTVK 102 (102) T ss_dssp --CEEEEEEC T ss_pred --CEEEEEEC T ss_conf --76999989 No 29 >>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant; 1.75A {Silene pratensis} (A:) Probab=94.67 E-value=0.18 Score=29.86 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=52.7 Q ss_pred CCEEEEEECCCEEEEEEEECC----CCHHCCCHHHCCEECCCCCCCE-------EEEEEECCCEEEEEECCCCCCCCCCC Q ss_conf 430689636982899998358----1011022010740311698514-------89999427748966613326576113 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASS----VMNSFYIPGLAGQIYAMAGMET-------KLHAVMNKKGAYSGFSANYSGRGFSH 232 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~D----ViHSF~IP~l~~k~daiPG~~t-------~l~~~a~~~G~y~G~cae~cG~ghs~ 232 (332) ..+.|.+.+|..|+|.+++.. .+|...++......+.-+...+ ...+++++||+|.-.|.--|..| T Consensus 15 ~~~~i~v~~Gd~V~~~~~n~~~H~~~~h~~~~~~~~~~~~~~~~~~~~~i~pg~t~~~~f~~pG~~~yhC~~H~~~G--- 91 (99) T 1byp_A 15 VPSDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAPHAGAG--- 91 (99) T ss_dssp ESSEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCEEEEEECGGGTTTT--- T ss_pred CCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCC--- T ss_conf 39999989999999999998842268734777876531467665456555898569999668954999977787789--- Q ss_pred CEEEEEE Q ss_conf 6589997 Q gi|254780474|r 233 MRFKFYG 239 (332) Q Consensus 233 M~f~v~v 239 (332) |...++| T Consensus 92 M~G~i~V 98 (99) T 1byp_A 92 MVGKVTV 98 (99) T ss_dssp CEEEEEE T ss_pred CEEEEEE T ss_conf 8899998 No 30 >>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} (A:) Probab=94.66 E-value=0.21 Score=29.31 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=51.2 Q ss_pred CEEEEEECCCEEEEEEEEC----CCCHHCCCHH---------HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCC Q ss_conf 3068963698289999835----8101102201---------07403116985148999942774896661332657611 Q gi|254780474|r 165 INELVVPIDRPLEFRITAS----SVMNSFYIPG---------LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFS 231 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~----DViHSF~IP~---------l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs 231 (332) -+.|.+.+|..|+|.+++. -.+|...++. ...+.-..||- ...++.++||+|.-.|.-.|..| T Consensus 16 ~~~i~v~~Gd~V~~~~~n~~~h~~~~h~~~~~~~~~~~~~~~~~~~~~i~pg~--t~~~~f~~pG~~~y~C~~h~~~G-- 91 (99) T 1plc_A 16 PSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGE--TFEVALSNKGEYSFYCSPHQGAG-- 91 (99) T ss_dssp SSEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTC--EEEEECCSCEEEEEECGGGTTTT-- T ss_pred CCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCCEEEEEECCCCCCC-- T ss_conf 89999889999999999999621787057777765235775445665458885--69999657862999807887678-- Q ss_pred CCEEEEEE Q ss_conf 36589997 Q gi|254780474|r 232 HMRFKFYG 239 (332) Q Consensus 232 ~M~f~v~v 239 (332) |...++| T Consensus 92 -M~G~i~V 98 (99) T 1plc_A 92 -MVGKVTV 98 (99) T ss_dssp -CEEEEEE T ss_pred -CEEEEEE T ss_conf -6799998 No 31 >>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} (B:188-336) Probab=93.39 E-value=0.38 Score=27.55 Aligned_cols=81 Identities=10% Similarity=-0.039 Sum_probs=60.2 Q ss_pred CCCCEEEEEECCCEEEEEEEEC---CCCH-----HCCCHHHC------CEECCCCCCCEEEEEEECCCEEEEEECCCCCC Q ss_conf 7743068963698289999835---8101-----10220107------40311698514899994277489666133265 Q gi|254780474|r 162 VAIINELVVPIDRPLEFRITAS---SVMN-----SFYIPGLA------GQIYAMAGMETKLHAVMNKKGAYSGFSANYSG 227 (332) Q Consensus 162 iatvneL~lPv~~pV~f~ltS~---DViH-----SF~IP~l~------~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG 227 (332) ....+.|.++.|..|+++++.. +-.| ....+..+ ......||-...+.++++++|+|.-.|.... T Consensus 48 ~~~~~~i~~~~G~~v~~~v~N~~~~~~~h~iH~HG~~~~~~~~~~~~~~~~~i~pg~~~~~~f~a~~~G~~~~HcHi~~- 126 (149) T 1sdd_B 48 IYNLPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGE- 126 (149) T ss_dssp SSCCCCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSCEEESSEEECTTEEEEEEEECCSSEEEEEECCCHH- T ss_pred ECCCCCEEEECCCEEEEEEEECCCCCCCEEEEEECCEEEECCCCCCEECEEEECCCEEEEEEEECCCCEEEEEEECCHH- T ss_conf 0677875983699899999957899874238991859998267882513499699508999999689878999926625- Q ss_pred CCCCCCEEEEEECCHH Q ss_conf 7611365899970889 Q gi|254780474|r 228 RGFSHMRFKFYGKSEK 243 (332) Q Consensus 228 ~ghs~M~f~v~v~s~~ 243 (332) .-.+.|...+++.+++ T Consensus 127 h~~~GM~g~~iV~~~~ 142 (149) T 1sdd_B 127 IQRAGMQTPFLIVDRE 142 (149) T ss_dssp HHTTTCEEEEEEECTT T ss_pred HHHCCCCCCEEECCCC T ss_conf 7637133421231333 No 32 >>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} (A:213-363) Probab=92.05 E-value=0.38 Score=27.55 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=61.8 Q ss_pred CCEEEEEECCCEEEEEEEECCCC--------HHCCCHHHCCEE---CCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC Q ss_conf 43068963698289999835810--------110220107403---1169851489999427748966613326576113 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSVM--------NSFYIPGLAGQI---YAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH 232 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DVi--------HSF~IP~l~~k~---daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~ 232 (332) ....+.+..|..|++.++..+-+ |.|++..-+... ..-||-...+.|.|+.+|+|.-.|--.+ --.+. T Consensus 57 ~~~~i~~~~gd~v~~~i~N~~~~~h~~~iH~Hg~~~~~~~~~~~~~~i~pg~~~~~~f~ad~pG~w~~HCHi~~-H~~~G 135 (151) T 2j5w_A 57 SLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLN-HLKAG 135 (151) T ss_dssp CCCCCEEETTCEEEEEEEECSSTTCCEEEEETTCCEEETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHH-HHHTT T ss_pred CCCCCEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCEEEECCCCEEEEEEECCCCCCEEECCCCCH-HHHCC T ss_conf 88871786798899999957788745578976953224870314499799728999998389851244133420-44268 Q ss_pred CEEEEEECCHH Q ss_conf 65899970889 Q gi|254780474|r 233 MRFKFYGKSEK 243 (332) Q Consensus 233 M~f~v~v~s~~ 243 (332) |...++|.+++ T Consensus 136 M~g~~~V~~~~ 146 (151) T 2j5w_A 136 LQAFFQVQECN 146 (151) T ss_dssp CEEEEEEECSC T ss_pred CEEEEEECCCC T ss_conf 47899864687 No 33 >>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} (A:) Probab=91.93 E-value=0.62 Score=26.03 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=53.3 Q ss_pred CEEEEEECCCEEEEEEEECC----CCHHCCCHHHC-------CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC Q ss_conf 30689636982899998358----10110220107-------40311698514899994277489666133265761136 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS----VMNSFYIPGLA-------GQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM 233 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D----ViHSF~IP~l~-------~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M 233 (332) -+.|.+.+|..|+|..+.+. .+|++..|... .+...-||- ...++.+++|+|.-.|.--|..| | T Consensus 17 ~~~i~v~~Gd~V~~~n~~~~~h~~~~hg~~~~~~~~~~~~~~~~~~i~pg~--t~~~~f~~~G~y~yhC~~h~~~G---M 91 (98) T 2plt_A 17 PKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGE--TYSVKLTAAGEYGYYCEPHQGAG---M 91 (98) T ss_dssp SSEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTC--EEEEECCSCEEEEEECGGGGGGT---C T ss_pred CCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCCEEEEEECCCCCCC---C T ss_conf 899998799989999899885018994586213556775455655668985--69999658964999967688899---8 Q ss_pred EEEEEE Q ss_conf 589997 Q gi|254780474|r 234 RFKFYG 239 (332) Q Consensus 234 ~f~v~v 239 (332) ...++| T Consensus 92 ~G~i~V 97 (98) T 2plt_A 92 VGKIIV 97 (98) T ss_dssp EEEEEE T ss_pred EEEEEE T ss_conf 899998 No 34 >>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} (A:) Probab=91.69 E-value=0.76 Score=25.39 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=57.3 Q ss_pred CCEEEEEECCCEEEEEEEEC----CCCHHCCCHHH---------CCEECCCCCCCEEEEEEE-CCCEEEEEECCCCCCCC Q ss_conf 43068963698289999835----81011022010---------740311698514899994-27748966613326576 Q gi|254780474|r 164 IINELVVPIDRPLEFRITAS----SVMNSFYIPGL---------AGQIYAMAGMETKLHAVM-NKKGAYSGFSANYSGRG 229 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~----DViHSF~IP~l---------~~k~daiPG~~t~l~~~a-~~~G~y~G~cae~cG~g 229 (332) .-..|.+.+|..|+|+++.. -.+|...+|.. ..+....||.+-+..|.+ +++|+|.-.|.--|-.| T Consensus 18 ~~p~i~v~~Gd~V~~~~~N~~~h~~~~h~~~~~~~~~~~~~~~~~~~~~i~Pg~~~~~~f~~~~~~Gt~~yhch~H~~~G 97 (106) T 2gim_A 18 EPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAG 97 (106) T ss_dssp ESSEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECTTTGGGT T ss_pred ECCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC T ss_conf 79999999999999998998974288725787665434566456553012788417899804778822999947786788 Q ss_pred CCCCEEEEEEC Q ss_conf 11365899970 Q gi|254780474|r 230 FSHMRFKFYGK 240 (332) Q Consensus 230 hs~M~f~v~v~ 240 (332) |...++|. T Consensus 98 ---M~G~i~Ve 105 (106) T 2gim_A 98 ---MVGKITVA 105 (106) T ss_dssp ---CEEEEEEC T ss_pred ---CEEEEEEE T ss_conf ---57999996 No 35 >>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} (A:160-333) Probab=91.48 E-value=0.66 Score=25.81 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=59.8 Q ss_pred CCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCE------------------ECCCCCCCEEEEEEECCCEEEEEECCCC Q ss_conf 4306896369828999983581011022010740------------------3116985148999942774896661332 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSVMNSFYIPGLAGQ------------------IYAMAGMETKLHAVMNKKGAYSGFSANY 225 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k------------------~daiPG~~t~l~~~a~~~G~y~G~cae~ 225 (332) ....+.+-.|..|+|.+....-.|+|-+-....+ +..-||-...+.++|+.||+|.--|-.+ T Consensus 64 ~~~~~~~~~ge~v~~~~n~~~~~hp~H~hg~~f~~~~~~G~~~~~~~~~~dTi~v~pg~~~~i~~~ad~PG~w~~HCH~~ 143 (174) T 1mzy_A 64 GEGALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNHNL 143 (174) T ss_dssp GGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEETTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESSH T ss_pred CCCCCEECCCCEEEEEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCHH T ss_conf 87563624698899998268788773552267319997973158886662359989982399999889992789975707 Q ss_pred CCCCCCCCEEEEEECCH Q ss_conf 65761136589997088 Q gi|254780474|r 226 SGRGFSHMRFKFYGKSE 242 (332) Q Consensus 226 cG~ghs~M~f~v~v~s~ 242 (332) .-..-+.|...+.|... T Consensus 144 ~~h~~~Gm~~~~~V~~~ 160 (174) T 1mzy_A 144 IEAVHKGATAHVLVEGE 160 (174) T ss_dssp HHHHTTCCEEEEEEESC T ss_pred HHHHHCCCEEEEEEECC T ss_conf 78985489799998178 No 36 >>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} (A:1-159) Probab=91.26 E-value=1 Score=24.45 Aligned_cols=81 Identities=16% Similarity=0.023 Sum_probs=65.3 Q ss_pred CCEEEEEECCCEEEEEEEEC-CCCHHCCC--------HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC-- Q ss_conf 43068963698289999835-81011022--------01074031169851489999427748966613326576113-- Q gi|254780474|r 164 IINELVVPIDRPLEFRITAS-SVMNSFYI--------PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH-- 232 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~-DViHSF~I--------P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~-- 232 (332) ---.|++-.|..|+++++-+ ++.|++.. +.-..+...-||-.-...|.++++|.|.=.|..+||.-+.+ T Consensus 62 pgP~i~v~~Gd~v~i~~~N~l~~~h~~~~~~~~~~~~~~~~~~~~i~PG~t~ty~f~~~~~Gt~~~h~h~~~~~~~~q~~ 141 (159) T 1mzy_A 62 PGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (159) T ss_dssp SCCEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH T ss_pred CCCEEEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCEEECCCCCCCCCCHHH T ss_conf 79649997798999998538998037430110578899988712578999899999768986441655777766320101 Q ss_pred --CEEEEEECCHHH Q ss_conf --658999708899 Q gi|254780474|r 233 --MRFKFYGKSEKG 244 (332) Q Consensus 233 --M~f~v~v~s~~~ 244 (332) |...+++.++++ T Consensus 142 ~Gl~G~liV~~~~~ 155 (159) T 1mzy_A 142 SGMAGCIMVLPRDG 155 (159) T ss_dssp TTCEEEEEEECTTC T ss_pred CCCCCCCCCCCCCC T ss_conf 14456311123457 No 37 >>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A (A:) Probab=90.36 E-value=0.75 Score=25.42 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=56.5 Q ss_pred CEEEEEECCCEEEEEEEEC----CCCHHCCC---------HHHCCEECCCCCCCEEEEEEE-CCCEEEEEECCCCCCCCC Q ss_conf 3068963698289999835----81011022---------010740311698514899994-277489666133265761 Q gi|254780474|r 165 INELVVPIDRPLEFRITAS----SVMNSFYI---------PGLAGQIYAMAGMETKLHAVM-NKKGAYSGFSANYSGRGF 230 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~----DViHSF~I---------P~l~~k~daiPG~~t~l~~~a-~~~G~y~G~cae~cG~gh 230 (332) -..|.+..|..|+|.++.. .++|.... +....+.-.-||-.-+..|++ +++|+|.-.|.--|..| T Consensus 18 ~p~i~v~~Gd~v~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~t~~~~f~~~~~~Gt~~yhch~h~~~G- 96 (105) T 3cvb_A 18 PANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAG- 96 (105) T ss_dssp SSEEEECTTEEEEEEECSSCCEEEEECTTSSGGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECTTTGGGT- T ss_pred CCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCC- T ss_conf 9999993999999999999961499988965455556677756463120899759999997457884899985117789- Q ss_pred CCCEEEEEEC Q ss_conf 1365899970 Q gi|254780474|r 231 SHMRFKFYGK 240 (332) Q Consensus 231 s~M~f~v~v~ 240 (332) |...++|. T Consensus 97 --M~G~i~Ve 104 (105) T 3cvb_A 97 --MVGKITVE 104 (105) T ss_dssp --CEEEEEEC T ss_pred --CEEEEEEE T ss_conf --88999997 No 38 >>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreductase; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} (A:298-490) Probab=85.19 E-value=2.6 Score=21.56 Aligned_cols=78 Identities=6% Similarity=-0.002 Sum_probs=59.4 Q ss_pred CEEEEEECCCEEEEEEEECCCC--------HHCCCHHHCC-----------------------------EECCCCCCCEE Q ss_conf 3068963698289999835810--------1102201074-----------------------------03116985148 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVM--------NSFYIPGLAG-----------------------------QIYAMAGMETK 207 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DVi--------HSF~IP~l~~-----------------------------k~daiPG~~t~ 207 (332) .+-+.++.|+.|.+.++..+.+ |+|+|-..++ -+..-||-... T Consensus 72 ~~~~~~~~g~~v~~~~~n~~~~~Hp~HlHg~~f~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dtv~v~~g~~~~ 151 (193) T 1zpu_A 72 THTFILEKDEIVEIVLNNQDTGTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFV 151 (193) T ss_dssp SCEEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEE T ss_pred CEEEEECCCCEEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE T ss_conf 43599569968999994899998770856883099740587665434443335755565555699762689969998899 Q ss_pred EEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHH Q ss_conf 999942774896661332657611365899970889 Q gi|254780474|r 208 LHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 208 l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~ 243 (332) +.|.|+.+|.|.--|...--.. ..|...+.+.+++ T Consensus 152 i~f~ad~pG~w~~HCHi~~H~~-~GM~~~~~v~~~~ 186 (193) T 1zpu_A 152 IRFKADNPGVWFFHCHIEWHLL-QGLGLVLVEDPFG 186 (193) T ss_dssp EEEECCSCEEEEEEECCHHHHH-TTCEEEEEECHHH T ss_pred EEEEECCCEEEEEECCCHHHHH-CCCCEEEEECCHH T ss_conf 9999089774068148677876-8484899998323 No 39 >>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} (A:) Probab=85.08 E-value=2.7 Score=21.53 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=50.9 Q ss_pred CCEEEEEECCCEEEEEEEECCC----CHHCCCHHH------CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC Q ss_conf 4306896369828999983581----011022010------740311698514899994277489666133265761136 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSV----MNSFYIPGL------AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM 233 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DV----iHSF~IP~l------~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M 233 (332) .-+.|.+.+|..|+|..+...- .|+..+|.. ......-|| .....+.+++|+|.-.|.--|..| | T Consensus 17 ~p~~i~v~~Gd~V~~~n~~~~~h~vh~hg~~~~~~~~g~~~~~~~~~~pg--~t~~~~f~~~G~~~yhC~~h~~~G---M 91 (98) T 1pcs_A 17 EPSTVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAG--ESFTSTFTEPGTYTYYCEPHRGAG---M 91 (98) T ss_dssp ESSEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTT--CEEEEECCSCEEEEEECGGGTTTT---C T ss_pred ECCEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC--CEEEEEECCCEEEEEECCCCCCCC---C T ss_conf 78999999999899978898875247703567777655545455433799--537998078847999847688999---8 Q ss_pred EEEEEE Q ss_conf 589997 Q gi|254780474|r 234 RFKFYG 239 (332) Q Consensus 234 ~f~v~v 239 (332) ...++| T Consensus 92 ~G~i~V 97 (98) T 1pcs_A 92 VGKVVV 97 (98) T ss_dssp EEEEEE T ss_pred EEEEEE T ss_conf 799998 No 40 >>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} (A:1-159) Probab=83.77 E-value=3 Score=21.14 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=60.7 Q ss_pred CEEEEEECCCEEEEEEEECC-CCHHCCCH--------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC---CC Q ss_conf 30689636982899998358-10110220--------10740311698514899994277489666133265761---13 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS-VMNSFYIP--------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF---SH 232 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D-ViHSF~IP--------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh---s~ 232 (332) .-.+.+=.|..|+++++-+. .-|++... .-..+....||..-...|.++++|+|.--|-..+=.++ +. T Consensus 64 gP~i~~~~Gd~v~i~~~N~~~~~h~~~~~~~~~~~g~~~~~~~~i~PG~t~~y~f~~~~pGt~wYH~H~~~~~~~q~~~G 143 (159) T 1oe1_A 64 GPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (159) T ss_dssp CCCEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT T ss_pred CCEEEEECCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHCC T ss_conf 97499979999999999089987402136278788899862367889998999997368860698624765446777504 Q ss_pred CEEEEEECCHHH Q ss_conf 658999708899 Q gi|254780474|r 233 MRFKFYGKSEKG 244 (332) Q Consensus 233 M~f~v~v~s~~~ 244 (332) |...+++.++++ T Consensus 144 l~G~~iV~~~~~ 155 (159) T 1oe1_A 144 MSGTLMVLPRDG 155 (159) T ss_dssp CEEEEEEECTTC T ss_pred CCCCCEECCCCC T ss_conf 544100025665 No 41 >>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal binding protein; 1.90A {Nitrosomonas europaea} (A:131-290) Probab=83.58 E-value=3.1 Score=21.09 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=53.1 Q ss_pred EEEEEECCCEEEEEEEECC-CCHHCCC-------H----------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCC Q ss_conf 0689636982899998358-1011022-------0----------10740311698514899994277489666133265 Q gi|254780474|r 166 NELVVPIDRPLEFRITASS-VMNSFYI-------P----------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSG 227 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~D-ViHSF~I-------P----------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG 227 (332) +.+.+..|+.|+++++... ..|+|.| - .-......-||-.....+.++.+|.|.-.|...- T Consensus 48 ~~i~v~~G~~v~~~~~N~~~~~~~~hih~~~~~v~~~~~~~~~~~~~~dt~~i~pg~~~~~~~~~d~pG~~~~HcH~~~- 126 (160) T 3g5w_A 48 QPIRVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDT- 126 (160) T ss_dssp CCEEECTTCEEEEEEEECSSSCEEEEETTSCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEESSGG- T ss_pred CCEEEECCCEEEEEECCCCCCEEEEEECCCEEEEEEECCEECCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEECCHH- T ss_conf 6589827968999833588626879979957999998998856972873899899988999999699813799955777- Q ss_pred CCCCCCEEEEEECC Q ss_conf 76113658999708 Q gi|254780474|r 228 RGFSHMRFKFYGKS 241 (332) Q Consensus 228 ~ghs~M~f~v~v~s 241 (332) .....|...+++.+ T Consensus 127 h~~~Gm~g~~~V~~ 140 (160) T 3g5w_A 127 HTTNGDKPDGGIMT 140 (160) T ss_dssp GSCBTTBSSCBSEE T ss_pred HHHCCCCCCCCCEE T ss_conf 97667888887489 No 42 >>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes} (A:132-290) Probab=81.78 E-value=3.6 Score=20.62 Aligned_cols=74 Identities=8% Similarity=-0.055 Sum_probs=52.3 Q ss_pred CEEEEEECCCEEEEEEEECCCC-HHCCCH-----------------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCC Q ss_conf 3068963698289999835810-110220-----------------1074031169851489999427748966613326 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVM-NSFYIP-----------------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYS 226 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DVi-HSF~IP-----------------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~c 226 (332) ...+.+..|+.|++++....-. |+|.+- ........-||-...+.++++++|.|.-.|.... T Consensus 47 ~~~~~~~~G~~v~~~~~N~~~~~~~~h~hg~~~~~~~~~~~~~~~~~~~dt~~i~pg~~~~~~~~~~~pG~~~~hch~~~ 126 (159) T 2zwn_A 47 TQPLRVKKGDVVKIRFFGAGGGIHAMHSHGHDMLVTHKDGLPLDSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHVDT 126 (159) T ss_dssp SCCEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEECCGG T ss_pred CCCEEEECCCEEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEEEECCH T ss_conf 33379827988999885035650114607974699970895857985773899899998999999489864899980113 Q ss_pred CCCCCCCEEEEEE Q ss_conf 5761136589997 Q gi|254780474|r 227 GRGFSHMRFKFYG 239 (332) Q Consensus 227 G~ghs~M~f~v~v 239 (332) .....|...+.+ T Consensus 127 -h~~~Gm~~~~~v 138 (159) T 2zwn_A 127 -HVTAGGKHPGGP 138 (159) T ss_dssp -GSCBTTBSSCSS T ss_pred -HHHCCCCCCCCC T ss_conf -521568778850 No 43 >>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} (A:1-160) Probab=80.02 E-value=4.1 Score=20.22 Aligned_cols=81 Identities=12% Similarity=-0.036 Sum_probs=62.2 Q ss_pred CCCEEEEEECCCEEEEEEEEC----CCCHHC-----CCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCC--CC Q ss_conf 743068963698289999835----810110-----2201074031169851489999427748966613326576--11 Q gi|254780474|r 163 AIINELVVPIDRPLEFRITAS----SVMNSF-----YIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRG--FS 231 (332) Q Consensus 163 atvneL~lPv~~pV~f~ltS~----DViHSF-----~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~g--hs 231 (332) ..-..|.+-.|..|+++++-. +.+|-. ....-..+....||..-...|.++++|+|.--|.-.|=.. .+ T Consensus 67 ~pgP~i~~~~Gd~v~i~~~N~~~~~~~~H~hg~~~~~~~~g~~~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~~ 146 (160) T 1kbv_A 67 VPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIAN 146 (160) T ss_dssp SSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHT T ss_pred CCCCEEEEECCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHH T ss_conf 68961999779999999998998862452402067888998741568799859999987798067883455665777753 Q ss_pred CCEEEEEECCHH Q ss_conf 365899970889 Q gi|254780474|r 232 HMRFKFYGKSEK 243 (332) Q Consensus 232 ~M~f~v~v~s~~ 243 (332) .|..-+++.+++ T Consensus 147 Gl~G~~iV~~~~ 158 (160) T 1kbv_A 147 GMYGLILVEPKE 158 (160) T ss_dssp TCEEEEEEECTT T ss_pred HCCCCEEECCCC T ss_conf 024302506844 No 44 >>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} (A:) Probab=79.83 E-value=4.1 Score=20.18 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=50.1 Q ss_pred CCEEEEEECCCEEEEEEEECCC-CHHCCC-----HH----------------------------HCCEECCCCCCCEEEE Q ss_conf 4306896369828999983581-011022-----01----------------------------0740311698514899 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSV-MNSFYI-----PG----------------------------LAGQIYAMAGMETKLH 209 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DV-iHSF~I-----P~----------------------------l~~k~daiPG~~t~l~ 209 (332) ..+-+++..|+.|++.++..+- -|.|-+ .. ++--+..-||-...+. T Consensus 17 ~~~~~~~~~G~~v~~~l~N~~~~~h~~h~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dt~~v~pg~~~~~~ 96 (129) T 2ccw_A 17 VKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVT 96 (129) T ss_dssp CSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEE T ss_pred CCEEEEECCCCEEEEEEEECCCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 65589915998999999918968510154053214750189999999751110366798862100213221788437999 Q ss_pred EEE---CCCEEEEEECCCCCCCCCC-CCEEEEEEC Q ss_conf 994---2774896661332657611-365899970 Q gi|254780474|r 210 AVM---NKKGAYSGFSANYSGRGFS-HMRFKFYGK 240 (332) Q Consensus 210 ~~a---~~~G~y~G~cae~cG~ghs-~M~f~v~v~ 240 (332) +++ +.+|+|.--|.-. +|. .|...+.|. T Consensus 97 f~~~~~~~pG~~~~HCHi~---~H~~GM~g~i~V~ 128 (129) T 2ccw_A 97 FDVSKIAAGENYAYFCSFP---GHWAMMKGTLKLG 128 (129) T ss_dssp EEGGGSCTTCCEEEECCST---TGGGTSEEEEEEC T ss_pred EEECCCCCCCEEEEEECCC---CCCCCCEEEEEEC T ss_conf 9834668896199996999---8000837899975 No 45 >>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} (A:907-1065) Probab=78.78 E-value=4.4 Score=19.96 Aligned_cols=79 Identities=6% Similarity=0.048 Sum_probs=56.8 Q ss_pred CEEEEEECCCEEEEEEEECC-CCHHCCC-------------HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC Q ss_conf 30689636982899998358-1011022-------------010740311698514899994277489666133265761 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS-VMNSFYI-------------PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF 230 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D-ViHSF~I-------------P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh 230 (332) ...+.+..|..|++.++... ..|+|-+ |...-.+-.-||-...+++.++.+|+|.--|--.. --. T Consensus 63 ~~~~~v~~g~~v~~~i~N~~~~~~~~h~hg~~~~~~~~~~~~~~~dtv~i~pg~~~~~~~~~~~~G~~~~HCH~~~-H~~ 141 (159) T 2j5w_A 63 LQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTD-HIH 141 (159) T ss_dssp CCCCEEETTCEEEEEEEECCSTTCCEEEEESSCCEEETTTTCEEESEEEECTTCEEEEEECCCSCEEEEEEECCHH-HHH T ss_pred CCCEEECCCCEEEEEEEECCCCCCCCCEEECCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCHH-HHH T ss_conf 8866963899899999979999899892876705598489997442899899977999999489887688528888-986 Q ss_pred CCCEEEEEECCHHH Q ss_conf 13658999708899 Q gi|254780474|r 231 SHMRFKFYGKSEKG 244 (332) Q Consensus 231 s~M~f~v~v~s~~~ 244 (332) ..|...+++.++++ T Consensus 142 ~GM~g~~~V~~~~~ 155 (159) T 2j5w_A 142 AGMETTYTVLQNED 155 (159) T ss_dssp TTCEEEEEEECCC- T ss_pred CCCCEEEEEECCCC T ss_conf 55854999972898 No 46 >>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} (A:181-306) Probab=77.76 E-value=0.37 Score=27.58 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=55.9 Q ss_pred CEEEEEECCCEEEEEEEECC-CCH-------HCCCHHHCCEEC---CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC Q ss_conf 30689636982899998358-101-------102201074031---1698514899994277489666133265761136 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS-VMN-------SFYIPGLAGQIY---AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM 233 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D-ViH-------SF~IP~l~~k~d---aiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M 233 (332) ...+.++.|..|++.++... .-| .+..+.-+...| .-||-.....|+++++|+|.--|.- ++.--+.| T Consensus 34 ~p~i~~~~Gd~v~~~v~N~~~~~~~~~ih~~g~~~~~~~~~~~~~~i~pg~~~~~~f~~~~~G~~~yHch~-~~H~~~Gm 112 (126) T 1sdd_A 34 MPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASLI-PRHFQAGM 112 (126) T ss_dssp CCCCCCCCC------BBCCCSSSCEECCBCSSTTCEETTEECSCCCEETTCCBC--------CCCCCBCCS-TTTGGGTC T ss_pred CCCEEEECCCEEEEEEEECCCCCCCEEEEECCCEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEECCC-HHHHHCCC T ss_conf 77707946998999999527764421598558589978953108998998289999998998899997587-78987689 Q ss_pred EEEEEECCHHH Q ss_conf 58999708899 Q gi|254780474|r 234 RFKFYGKSEKG 244 (332) Q Consensus 234 ~f~v~v~s~~~ 244 (332) ...++|.++++ T Consensus 113 ~g~~~V~~~~~ 123 (126) T 1sdd_A 113 QAYIDIKNCAK 123 (126) T ss_dssp BCCC------- T ss_pred EEEEEEEECCC T ss_conf 69999810888 No 47 >>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} (A:137-305) Probab=76.33 E-value=5.1 Score=19.49 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=48.2 Q ss_pred CEEEEEECCCEEEEEEEECCCCH--HCCCHHHCCEEC----------------CCCCCCEEEEEEECC-CEEEEEECCCC Q ss_conf 30689636982899998358101--102201074031----------------169851489999427-74896661332 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMN--SFYIPGLAGQIY----------------AMAGMETKLHAVMNK-KGAYSGFSANY 225 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViH--SF~IP~l~~k~d----------------aiPG~~t~l~~~a~~-~G~y~G~cae~ 225 (332) ...+.+..|+.++|+|-.....+ .|.|.....++- .-||.+-.+-+++++ +|.|...|.-+ T Consensus 48 ~~~i~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~v~p~~~d~i~i~pGqR~dv~v~~~~~~g~y~i~~~~~ 127 (169) T 1hfu_A 48 LSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPN 127 (169) T ss_dssp CCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEEEEES T ss_pred CCEEEEECCCEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEEEECC T ss_conf 83699843868999885377743789996687247993388426753222699616659999998458997189998426 Q ss_pred CCCC Q ss_conf 6576 Q gi|254780474|r 226 SGRG 229 (332) Q Consensus 226 cG~g 229 (332) -... T Consensus 128 ~~~~ 131 (169) T 1hfu_A 128 KGRN 131 (169) T ss_dssp SCGG T ss_pred CCCC T ss_conf 8864 No 48 >>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} (A:) Probab=75.07 E-value=5.5 Score=19.27 Aligned_cols=73 Identities=15% Similarity=0.031 Sum_probs=49.5 Q ss_pred CCEEEEEECCCEEEEEEEECCC------CHHCCCHHH----------------------------CCEECCCCCCCEEEE Q ss_conf 4306896369828999983581------011022010----------------------------740311698514899 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSV------MNSFYIPGL----------------------------AGQIYAMAGMETKLH 209 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DV------iHSF~IP~l----------------------------~~k~daiPG~~t~l~ 209 (332) ..+-++.+.|+.|++.|.+.+. +|.|-+... +--...-||-...+. T Consensus 17 p~~~~~~~~G~~v~i~l~N~~~~~H~~h~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~pG~~~~~~ 96 (128) T 1nwp_A 17 TKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSVT 96 (128) T ss_dssp CSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEEE T ss_pred CCEEEEECCCCEEEEEEECCCCCCEEEEEECHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEEE T ss_conf 65799946995899999868977402776150002613579999998763001478998873124774000689825899 Q ss_pred EEE---CCCEEEEEECCCCCCCCC-CCCEEEEEE Q ss_conf 994---277489666133265761-136589997 Q gi|254780474|r 210 AVM---NKKGAYSGFSANYSGRGF-SHMRFKFYG 239 (332) Q Consensus 210 ~~a---~~~G~y~G~cae~cG~gh-s~M~f~v~v 239 (332) |++ +.||+|.-.|.-. +| +.|...++| T Consensus 97 f~~~~~~~pG~~~yhChi~---~H~~GM~g~i~V 127 (128) T 1nwp_A 97 FDVSKLAAGEKYGFFCSFP---GHISMMKGTVTL 127 (128) T ss_dssp EEGGGSCTTSCEEEECCST---TCGGGSEEEEEE T ss_pred EEECCCCCCCCEEEEECCC---CHHHCCEEEEEE T ss_conf 9802688898489997889---933576699998 No 49 >>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* (A:565-742) Probab=74.65 E-value=1.8 Score=22.81 Aligned_cols=78 Identities=10% Similarity=-0.083 Sum_probs=57.9 Q ss_pred CEEEEEECCCEEEEEEEECCC--------CHHCCCHHHCCEEC---CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC Q ss_conf 306896369828999983581--------01102201074031---1698514899994277489666133265761136 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSV--------MNSFYIPGLAGQIY---AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM 233 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DV--------iHSF~IP~l~~k~d---aiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M 233 (332) .+.+.+..|..|+++++.... +|.+..+..+...+ ..||-...+.|+|+++|.|.--|-..+ --.+.| T Consensus 61 ~p~i~v~~g~~v~i~l~N~~~~~~~h~iH~HG~~~~~~~~~~~~~~~~pg~~~~~~f~ad~pG~~~~HCH~~~-H~~~GM 139 (178) T 2r7e_A 61 SLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGETVFMSMENPGLWILGCHNSD-FRNRGM 139 (178) T ss_dssp CCCCCCCSSCCCEEEEEECSSCCCCCCCEESSSCCCCBSSSBCSSCCCCCSSEECCEECCCCCCSCCEECCCS-TTHHHH T ss_pred CCCEEECCCCEEEEEEECCCCCCCCCCEEECCCEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEEEECCHH-HHHCCC T ss_conf 8764846999899999808888888886888815587489888799799988999998899986799838888-997469 Q ss_pred EEEEEECCHH Q ss_conf 5899970889 Q gi|254780474|r 234 RFKFYGKSEK 243 (332) Q Consensus 234 ~f~v~v~s~~ 243 (332) ...+++.+++ T Consensus 140 ~~~~~V~~~~ 149 (178) T 2r7e_A 140 TALLKVSSCD 149 (178) T ss_dssp SCCCCCCCCC T ss_pred CEEEEEECCC T ss_conf 4499994487 No 50 >>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* (A:189-354) Probab=74.07 E-value=5.3 Score=19.37 Aligned_cols=77 Identities=9% Similarity=-0.022 Sum_probs=57.1 Q ss_pred EEEEEECCCEEEEEEEECC-C--CHHC--------CCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCE Q ss_conf 0689636982899998358-1--0110--------220107403116985148999942774896661332657611365 Q gi|254780474|r 166 NELVVPIDRPLEFRITASS-V--MNSF--------YIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMR 234 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~D-V--iHSF--------~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~ 234 (332) ..+.+..|..|+++++... . .|++ ..+....+...-||..-...+.|+++|+|.-.|--.. .-.+.|. T Consensus 56 p~~~~~~gd~v~i~l~N~~~~~~~~~iH~Hg~~~~~~~~~~~~~~i~pg~~~~~~~~a~~~G~~~yHcH~~~-H~~~Gm~ 134 (166) T 2r7e_A 56 PGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASLEISPITFLTAQTLLMDLGQFLLFCHISS-HQHDGME 134 (166) T ss_dssp CCCEECSSSCEEEECCCCCSSSCCCCCCCTTCCCEETTEECCSCCCCTTCCCEEEECCCSCSEECCCCCSSS-SSTTSCC T ss_pred CCEEECCCCEEEEEEEECCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEEECC-CCCCCCE T ss_conf 864665799899998606788774257706978999667154110111211478999840673566654244-2014850 Q ss_pred EEEEECCHH Q ss_conf 899970889 Q gi|254780474|r 235 FKFYGKSEK 243 (332) Q Consensus 235 f~v~v~s~~ 243 (332) ..++|.+++ T Consensus 135 g~~~V~~~~ 143 (166) T 2r7e_A 135 AYVKVDSCP 143 (166) T ss_dssp BCEEECCCC T ss_pred EEEEECCCC T ss_conf 799862577 No 51 >>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, metal-binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis TAC125} (A:1-149) Probab=68.48 E-value=7.7 Score=18.25 Aligned_cols=80 Identities=13% Similarity=0.010 Sum_probs=59.4 Q ss_pred CCEEEEEECCCEEEEEEEECC-CCHH---CCCH-----HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCC--CCC Q ss_conf 430689636982899998358-1011---0220-----1074031169851489999427748966613326576--113 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASS-VMNS---FYIP-----GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRG--FSH 232 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~D-ViHS---F~IP-----~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~g--hs~ 232 (332) --.-+.+-.|..|+++++.+. .-|+ -..+ .-..+....||-.-...|.++++|+|.--|.-.+=.- -+. T Consensus 58 pgp~i~v~~Gd~v~i~~~N~~~~~~~~h~h~~~~~~~~~~~~~~~i~pg~~~~y~f~~~~~Gt~wYH~H~~~~~~q~~~G 137 (149) T 2zoo_A 58 PGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGGGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG 137 (149) T ss_dssp SCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT T ss_pred CCCEEEEECCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHC T ss_conf 58639997598999999989998530347868866799876628637998388999779997999972787658888606 Q ss_pred CEEEEEECCHH Q ss_conf 65899970889 Q gi|254780474|r 233 MRFKFYGKSEK 243 (332) Q Consensus 233 M~f~v~v~s~~ 243 (332) |..-+++.++| T Consensus 138 l~G~liV~~~~ 148 (149) T 2zoo_A 138 MYGLILVEPKE 148 (149) T ss_dssp CEEEEEEECTT T ss_pred CCCEEECCCCC T ss_conf 44354126887 No 52 >>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} (A:160-336) Probab=68.37 E-value=7.7 Score=18.24 Aligned_cols=81 Identities=9% Similarity=-0.058 Sum_probs=54.9 Q ss_pred CCCEEEEEECCCEEEEEEEECCCCHHC-------CCHHHCC-----------EECCCCCCCEEEEEEECCCEEEEEECCC Q ss_conf 743068963698289999835810110-------2201074-----------0311698514899994277489666133 Q gi|254780474|r 163 AIINELVVPIDRPLEFRITASSVMNSF-------YIPGLAG-----------QIYAMAGMETKLHAVMNKKGAYSGFSAN 224 (332) Q Consensus 163 atvneL~lPv~~pV~f~ltS~DViHSF-------~IP~l~~-----------k~daiPG~~t~l~~~a~~~G~y~G~cae 224 (332) .....+.+-.+..|++...+.+--|.| ++...++ -+..-||-...+.++|+.||+|.--|-. T Consensus 63 ~~~~~~~~~~~~~v~~~~~~~~~~~~~h~hg~~f~~~~~~g~~~~~~~~~~dt~~v~~~~~~~i~~~adnPG~w~~HCH~ 142 (177) T 1oe1_A 63 TGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHN 142 (177) T ss_dssp SGGGCEEEETTCEEEEEEEESSSCBCEEETTCCEEEEETTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESS T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCC T ss_conf 99714678718879999975877657189688647998688316887557349998998179999988998388998682 Q ss_pred CCCCCCCCCEEEEEECCHH Q ss_conf 2657611365899970889 Q gi|254780474|r 225 YSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 225 ~cG~ghs~M~f~v~v~s~~ 243 (332) ..=.-...|...+++..++ T Consensus 143 ~~~H~~~GM~~~~~v~~~~ 161 (177) T 1oe1_A 143 LIEAFELGAAGHIKVEGKW 161 (177) T ss_dssp HHHHHTTSCEEEEEEESCC T ss_pred HHHHHHCCCEEEEEEECCC T ss_conf 6678754886999997888 No 53 >>1gsk_A COTA, spore coat protein A; sporulation, laccase; 1.7A {Bacillus subtilis} (A:354-513) Probab=67.32 E-value=8.1 Score=18.10 Aligned_cols=80 Identities=14% Similarity=-0.029 Sum_probs=55.6 Q ss_pred CCEEEEEECCCEEEEEEEECCC-C-------HHCCCHH------------------------------HCCEECCCCCCC Q ss_conf 4306896369828999983581-0-------1102201------------------------------074031169851 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSV-M-------NSFYIPG------------------------------LAGQIYAMAGME 205 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DV-i-------HSF~IP~------------------------------l~~k~daiPG~~ 205 (332) ..+.+.++.|+.|++.|.+.+- . |+|+|.+ ++--+..-||-. T Consensus 42 ~~~~~~~~~g~~v~~~l~N~~~~~hp~HlHg~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rDtv~i~p~~~ 121 (160) T 1gsk_A 42 DPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEV 121 (160) T ss_dssp SCCCBCCBTTCEEEEEEEECSSSCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEE T ss_pred CCCCCEECCCCEEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCE T ss_conf 87652468998899999959989879916797289986558766664563211345766667766788752899699997 Q ss_pred EEEEEE-ECCCEEEEEECCCCCCCCCCCCEEEEEECCHHH Q ss_conf 489999-427748966613326576113658999708899 Q gi|254780474|r 206 TKLHAV-MNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKG 244 (332) Q Consensus 206 t~l~~~-a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~ 244 (332) ..+.+. ++.+|.|.--|...-= --..|...+.+.++++ T Consensus 122 ~~i~~~~~d~pG~~~~HCHi~~H-~~~Gm~~~~~V~~~~~ 160 (160) T 1gsk_A 122 LRIAATFGPYSGRYVWHCHILEH-EDYDMMRPMDITDPHK 160 (160) T ss_dssp EEEEEECCSCCEEEEEEESCHHH-HTTTCEEEEEEBC--- T ss_pred EEEEEEECCCCCCEEECCCCHHH-HHCCCCCEEEEECCCC T ss_conf 99999969999426991687788-8654866059718899 No 54 >>2cal_A Rusticyanin; iron respiratory electron transport chain, blue copper protein, copper, electron transport, metal- binding, periplasmic; 1.1A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A (A:) Probab=65.17 E-value=8.8 Score=17.81 Aligned_cols=73 Identities=10% Similarity=-0.010 Sum_probs=53.2 Q ss_pred EEEEEECCCEEEEEEEECCC-C--------HHCCCHHH-----------CCEECCCCCCCEEEEEEECCCEEEEEECCCC Q ss_conf 06896369828999983581-0--------11022010-----------7403116985148999942774896661332 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSV-M--------NSFYIPGL-----------AGQIYAMAGMETKLHAVMNKKGAYSGFSANY 225 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DV-i--------HSF~IP~l-----------~~k~daiPG~~t~l~~~a~~~G~y~G~cae~ 225 (332) ..+.+..|..|++.++-.+- . |.|.++.. .-....-||...+..|+++++|+|.-.|.-. T Consensus 61 p~i~v~~Gd~v~~~~~N~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~~~f~~~~pGt~~yHcH~~ 140 (154) T 2cal_A 61 PTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIP 140 (154) T ss_dssp CEEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEECCST T ss_pred CEEEEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCEEEEEECCCC T ss_conf 84998599999999991998764514525057763335666666776640124269985899998579996799968971 Q ss_pred CCCCCCCCEEEEEE Q ss_conf 65761136589997 Q gi|254780474|r 226 SGRGFSHMRFKFYG 239 (332) Q Consensus 226 cG~ghs~M~f~v~v 239 (332) |--.+.|...++| T Consensus 141 -~H~~~GM~G~~~V 153 (154) T 2cal_A 141 -GMAATGMFGKIVV 153 (154) T ss_dssp -TTGGGTCEEEEEE T ss_pred -CHHHCCCEEEEEE T ss_conf -1776788799998 No 55 >>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* (B:305-458) Probab=64.79 E-value=3 Score=21.14 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=48.5 Q ss_pred CEEEEEECCCEEEEEEEECCC---CHHCCCH-----------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC Q ss_conf 306896369828999983581---0110220-----------10740311698514899994277489666133265761 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSV---MNSFYIP-----------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF 230 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DV---iHSF~IP-----------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh 230 (332) ...+.++.|..|+++|....- -|+|-.- .....+..-||-...+.+.|+.+|+|.-.|--.+=... T Consensus 63 ~~~~~~~~g~~v~~~l~N~~~~~~~~~iH~h~~~f~~~~~~~~~~d~~~i~pg~~~~i~~~a~~pG~~~~HCHi~~H~~~ 142 (154) T 2r7e_B 63 LPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHA 142 (154) T ss_dssp CCCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCCEESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHHTT T ss_pred CCCEEECCCCEEEEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCHHHHHC T ss_conf 99637738998999999798998864739858689995579971104998999689999998999889997188479728 Q ss_pred C Q ss_conf 1 Q gi|254780474|r 231 S 231 (332) Q Consensus 231 s 231 (332) . T Consensus 143 G 143 (154) T 2r7e_B 143 G 143 (154) T ss_dssp B T ss_pred C T ss_conf 4 No 56 >>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} (A:) Probab=64.18 E-value=8 Score=18.11 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=60.7 Q ss_pred CCEEEEEECCCEEEEEEEEC--CCCHH-CCCHHHCC-EECCCCCCC--EEEEEEECCCEEEEEECC--CCCCCCCCCCEE Q ss_conf 43068963698289999835--81011-02201074-031169851--489999427748966613--326576113658 Q gi|254780474|r 164 IINELVVPIDRPLEFRITAS--SVMNS-FYIPGLAG-QIYAMAGME--TKLHAVMNKKGAYSGFSA--NYSGRGFSHMRF 235 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~--DViHS-F~IP~l~~-k~daiPG~~--t~l~~~a~~~G~y~G~ca--e~cG~ghs~M~f 235 (332) ..+...+-+|--+.|+..+. +|..+ |--|=-.. .-+.+.+.. ....++.+++|.|+-.|+ ..|+.| |++ T Consensus 26 w~~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~~~~c~~~~~~~~~~~~g~~~v~l~~~g~~yF~c~~~~hC~~G---mk~ 102 (138) T 1jer_A 26 WAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNG---QKL 102 (138) T ss_dssp HHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECCSSEEEEEECCSTTTGGGT---CEE T ss_pred HHCCCCEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCC---CEE T ss_conf 03479584799999996899801898767224544766886651036886688734785279866887832079---989 Q ss_pred EEEECCHHHHHHHHHHHHCCC Q ss_conf 999708899999999986072 Q gi|254780474|r 236 KFYGKSEKGFEDWISKVKRQG 256 (332) Q Consensus 236 ~v~v~s~~~f~~Wv~~~ka~~ 256 (332) .+.+.+............+.. T Consensus 103 ~I~v~~~~~~~~~~~~~~~~~ 123 (138) T 1jer_A 103 SINVVAANATVSMPPPSSSPP 123 (138) T ss_dssp EEEEECCC------------- T ss_pred EEEECCCCCCCCCCCCCCCCC T ss_conf 999758998788888888998 No 57 >>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} (A:161-327) Probab=62.37 E-value=9.9 Score=17.47 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=51.4 Q ss_pred CCEEEEEECCCEEEEEEEEC--CCCHHC-------CC---------HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCC Q ss_conf 43068963698289999835--810110-------22---------0107403116985148999942774896661332 Q gi|254780474|r 164 IINELVVPIDRPLEFRITAS--SVMNSF-------YI---------PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANY 225 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~--DViHSF-------~I---------P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~ 225 (332) ..+.+.+..+..|++.+..+ +-.|.| ++ |...--+..-||-...+.++++.||.|.--|... T Consensus 52 ~~~~~~~~~g~~v~~~~~n~~~~~~hp~H~Hg~~f~vv~~~~~~~~~~~~dtv~i~~g~~~~i~~~ad~pG~w~~HCH~~ 131 (167) T 1kbv_A 52 GDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSI 131 (167) T ss_dssp GGGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCEECSBSEEEECTTEEEEEEEEECSCEEEEEEESST T ss_pred CCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCC T ss_conf 87524780188998989727764001589769608999948954689973499989886899999979993128991453 Q ss_pred CCCCCCCCEEEEEECC Q ss_conf 6576113658999708 Q gi|254780474|r 226 SGRGFSHMRFKFYGKS 241 (332) Q Consensus 226 cG~ghs~M~f~v~v~s 241 (332) -=.--..|...+.+.. T Consensus 132 ~h~~~~Gm~~~~~v~~ 147 (167) T 1kbv_A 132 FRAFNKGALGQLKVEG 147 (167) T ss_dssp HHHHHSSCEEEEEEES T ss_pred HHHHCCCCEEEEEECC T ss_conf 3331635389999936 No 58 >>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* (C:) Probab=58.48 E-value=11 Score=17.01 Aligned_cols=73 Identities=10% Similarity=-0.006 Sum_probs=49.0 Q ss_pred CEEEEEECCCEEEEEEEECCC------CHHCCCHH-----------------------HC-----CEECCCCCCCEEEEE Q ss_conf 306896369828999983581------01102201-----------------------07-----403116985148999 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSV------MNSFYIPG-----------------------LA-----GQIYAMAGMETKLHA 210 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DV------iHSF~IP~-----------------------l~-----~k~daiPG~~t~l~~ 210 (332) .+-++++.|..|++.+...+- .|.|-+.. .. .-...-||-...+.+ T Consensus 17 ~~~~~~~~G~~v~~~~~N~~~~~h~~h~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~pG~~~~~~~ 96 (128) T 2iaa_C 17 KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSVTF 96 (128) T ss_dssp SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEE T ss_pred CEEEEECCCCEEEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCEEEEEEEECCCCCEEEEE T ss_conf 66999369989999997588775212533530268732789999987541310679887642255512416996169999 Q ss_pred EE---CCCEEEEEECCCCCCCCC-CCCEEEEEEC Q ss_conf 94---277489666133265761-1365899970 Q gi|254780474|r 211 VM---NKKGAYSGFSANYSGRGF-SHMRFKFYGK 240 (332) Q Consensus 211 ~a---~~~G~y~G~cae~cG~gh-s~M~f~v~v~ 240 (332) ++ +.+|+|.-.|.-. +| +.|...++|. T Consensus 97 ~~~~~~~pG~~~~HChi~---~H~~GM~g~i~V~ 127 (128) T 2iaa_C 97 DVSKLKEGEDYAFFCSFP---GHWSIMKGTIELG 127 (128) T ss_dssp ESSCCCTTCCEEEECCST---TCTTTSEEEEEEC T ss_pred EEECCCCCCEEEEEECCC---CCCCCCEEEEEEC T ss_conf 967157896099997999---9111847899975 No 59 >>2uxt_A Protein SUFI, SUFI; periplasmic, cupredoxin-like, FTS mutant suppressor, oxidoreductase; 1.9A {Escherichia coli} PDB: 2uxv_A (A:313-451) Probab=58.45 E-value=11 Score=17.16 Aligned_cols=79 Identities=8% Similarity=-0.065 Sum_probs=53.5 Q ss_pred CEEEEEECCCEEEEEEEECC--CC----HHCCC------------HHHCCEECCCCCCCEEEE--EEECCCEEEEEECCC Q ss_conf 30689636982899998358--10----11022------------010740311698514899--994277489666133 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS--VM----NSFYI------------PGLAGQIYAMAGMETKLH--AVMNKKGAYSGFSAN 224 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D--Vi----HSF~I------------P~l~~k~daiPG~~t~l~--~~a~~~G~y~G~cae 224 (332) ...+.+..|..|++.+.... .+ |.|.+ |..+......||-...+. +.++.+|+|.-.|-. T Consensus 34 ~p~i~~~~Gd~v~~~~~N~~~hp~hlHg~~f~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~~~~~~a~~~G~~~~HcHi 113 (139) T 2uxt_A 34 RIDVTAQQGTWERWTVRADEPQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNSQT 113 (139) T ss_dssp CCCEEEETTCEEEEEEEEEEEEEEEETTCEEEEEEETTBCCCGGGSSCBSEEEEEEEEEEEEECCSCCBTTBCEEEEESS T ss_pred CCCEEECCCCEEEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCEEEEECCH T ss_conf 63157258978999996899868728896699995579768877777677689099889999997978988658993782 Q ss_pred CCCCCCCCCEEEEEECCHHH Q ss_conf 26576113658999708899 Q gi|254780474|r 225 YSGRGFSHMRFKFYGKSEKG 244 (332) Q Consensus 225 ~cG~ghs~M~f~v~v~s~~~ 244 (332) .- -....|...+.|..+++ T Consensus 114 ~~-H~~~Gm~g~~~V~~~~~ 132 (139) T 2uxt_A 114 LE-MADRGSIGQLLVNPVPR 132 (139) T ss_dssp HH-HHHTTCEEEEEEECSCC T ss_pred HH-HHHCCCCEEEEEECCCC T ss_conf 78-87576856699945997 No 60 >>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} (A:404-418,A:574-723) Probab=58.01 E-value=12 Score=16.96 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=53.3 Q ss_pred CCEEEEEECCCEEEEEEEECC---CCHHC-------CC-HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC Q ss_conf 430689636982899998358---10110-------22-01074031169851489999427748966613326576113 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASS---VMNSF-------YI-PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH 232 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~D---ViHSF-------~I-P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~ 232 (332) ....+.+..|+.+++.+.+.. -.|.| +| |.-+--+..-||....+.+.++.||.|.--|--.-= -.+. T Consensus 72 ~~~~~~~~~~~~~~~~i~n~~~~~~~HP~HlHG~~f~v~~~~~DTv~v~pg~~~~i~f~~dnpG~W~~HCHi~~H-~~~G 150 (165) T 2j5w_A 72 NQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDH-YTGG 150 (165) T ss_dssp CCCCCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEECTTCEEEEEECCCSCEEEEEEECSHHH-HHTT T ss_pred CCCCCEECCCCEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEEECCCC-CCCC T ss_conf 888626737988999997488877502489816057832300673776588417999995478852678732433-2588 Q ss_pred CEEEEEEC Q ss_conf 65899970 Q gi|254780474|r 233 MRFKFYGK 240 (332) Q Consensus 233 M~f~v~v~ 240 (332) |...+.|. T Consensus 151 M~~~~~v~ 158 (165) T 2j5w_A 151 MKQKYTVN 158 (165) T ss_dssp CEEEEEEE T ss_pred CEEEEEEE T ss_conf 43899980 No 61 >>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} (A:1-165) Probab=55.23 E-value=13 Score=16.65 Aligned_cols=80 Identities=19% Similarity=0.059 Sum_probs=60.4 Q ss_pred CCEEEEEECCCEEEEEEEECC-C---CHHCCC-----HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC---C Q ss_conf 430689636982899998358-1---011022-----010740311698514899994277489666133265761---1 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASS-V---MNSFYI-----PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF---S 231 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~D-V---iHSF~I-----P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh---s 231 (332) --..+++=.|..|+++++... . +|.+-+ +.-..+.-..||-+-...|.++++|+|.--|-..|-..+ + T Consensus 69 pgP~i~v~~Gd~v~i~l~N~~~~~~~~h~hg~~~~~~~~~~~~~~i~pg~t~~y~f~~~qpGt~wYH~H~~~~t~~q~~~ 148 (165) T 2bw4_A 69 PGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (165) T ss_dssp SCCEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT T ss_pred CCCEEEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHCC T ss_conf 79759998894999999968988613678868878889987533178999899999867864346882465530332213 Q ss_pred CCEEEEEECCHH Q ss_conf 365899970889 Q gi|254780474|r 232 HMRFKFYGKSEK 243 (332) Q Consensus 232 ~M~f~v~v~s~~ 243 (332) .|..-.++.+++ T Consensus 149 Gl~G~~iV~~~~ 160 (165) T 2bw4_A 149 GMNGAIMVLPRD 160 (165) T ss_dssp TCEEEEEEECTB T ss_pred CCCCCCCCCCCC T ss_conf 101211224566 No 62 >>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} (A:147-285) Probab=53.52 E-value=14 Score=16.46 Aligned_cols=83 Identities=17% Similarity=-0.018 Sum_probs=62.1 Q ss_pred CCCCCEEEEEECCCEEEEEEEECCC----CH-----HCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC- Q ss_conf 8774306896369828999983581----01-----1022010740311698514899994277489666133265761- Q gi|254780474|r 161 QVAIINELVVPIDRPLEFRITASSV----MN-----SFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF- 230 (332) Q Consensus 161 giatvneL~lPv~~pV~f~ltS~DV----iH-----SF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh- 230 (332) |..--..+.+-.|..|+++++.+.- +| +-+.+.-..+...-||..-...|.++++|+|.--|...|=.-| T Consensus 44 g~~pgP~i~~~~Gd~v~i~l~N~~~~~~~~h~h~~~~~~~~~~~~~~~v~Pg~~~~y~f~~~~~Gt~wYH~H~~~~~~~~ 123 (139) T 2dv6_A 44 GKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATGPGGAAAFTQTDPGEETVVTFKALIPGIYVYHCATPSVPTHI 123 (139) T ss_dssp TBBSCCCEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGGGGCCBCTTCEEEEEEECCSCEEEEEECCSSSHHHHH T ss_pred CCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEE T ss_conf 99899769998798998998604898644420247864689889754318997178999775681576774578874216 Q ss_pred -CCCEEEEEECCHH Q ss_conf -1365899970889 Q gi|254780474|r 231 -SHMRFKFYGKSEK 243 (332) Q Consensus 231 -s~M~f~v~v~s~~ 243 (332) +.|....++.+++ T Consensus 124 ~~Gl~G~liV~~~~ 137 (139) T 2dv6_A 124 TNGMYGLLLVEPEG 137 (139) T ss_dssp HTTCEEEEEEECTT T ss_pred ECCEEEEEECCCCC T ss_conf 45303156603457 No 63 >>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} (A:129-310) Probab=53.18 E-value=14 Score=16.42 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=46.2 Q ss_pred EEEEEECCCEEEEEEEECCC--CHHCCCHHHCCEE----------------CCCCCCCEEEEEEECCCEEE--EEECCCC Q ss_conf 06896369828999983581--0110220107403----------------11698514899994277489--6661332 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSV--MNSFYIPGLAGQI----------------YAMAGMETKLHAVMNKKGAY--SGFSANY 225 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DV--iHSF~IP~l~~k~----------------daiPG~~t~l~~~a~~~G~y--~G~cae~ 225 (332) -.+.+..|+.++|+|..... .|.|.|..-..++ ..-||.+-.+-++++++|.. .-.-... T Consensus 76 ~~~~v~~g~~~rlrliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~i~i~pgeR~dv~v~a~~~g~~~~~~~~~~~ 155 (182) T 1aoz_A 76 YIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTR 155 (182) T ss_dssp CCEEECTTCEEEEEEEECCSSCEEEEEETTCCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEE T ss_pred CEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEECC T ss_conf 22786699889999723655543210136750367840887320002236751475206999994136776268884023 Q ss_pred CCCC Q ss_conf 6576 Q gi|254780474|r 226 SGRG 229 (332) Q Consensus 226 cG~g 229 (332) .+.| T Consensus 156 ~~~g 159 (182) T 1aoz_A 156 ARHP 159 (182) T ss_dssp SSCC T ss_pred CCCC T ss_conf 4577 No 64 >>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} (A:) Probab=49.87 E-value=16 Score=16.07 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=22.2 Q ss_pred ECCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHC Q ss_conf 7088999999999860724-5698999997610212 Q gi|254780474|r 239 GKSEKGFEDWISKVKRQGT-FLNRQEYLLLKKPSER 273 (332) Q Consensus 239 v~s~~~f~~Wv~~~ka~~~-~l~~~~y~~l~~ps~~ 273 (332) -+|++||+.|++..+..+. .|-...-.++.+..|. T Consensus 61 ~LS~eEf~~W~~~~~rhge~aLRat~lq~yRq~ye~ 96 (101) T 2oa4_A 61 GLSDEEFNSWVSALAEHGKDALKVTALKKYRQLLEH 96 (101) T ss_dssp CSSHHHHHHHHHHHHCCCSSSSCCHHHHHHHHTTSC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 989999999999999984998845328999999975 No 65 >>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, metal-binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis TAC125} (A:150-316) Probab=49.68 E-value=16 Score=16.05 Aligned_cols=77 Identities=10% Similarity=-0.017 Sum_probs=53.2 Q ss_pred CEEEEEECCCEEEEEEEECCC--CHH-------CC---------CHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCC Q ss_conf 306896369828999983581--011-------02---------201074031169851489999427748966613326 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSV--MNS-------FY---------IPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYS 226 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DV--iHS-------F~---------IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~c 226 (332) .+.+.+..|..|++.+..+.. -|. |. .|..+--+...||-...+.+++|.||.|.--|-... T Consensus 54 ~~~~~~~~g~~v~~~~~n~~~~~~hp~Hlhg~~f~vv~~~~~~~~p~~~DTv~i~pg~~~~i~~~ad~PG~w~~HCH~~~ 133 (167) T 2zoo_A 54 ENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFKVEVPGTFILVDHSIF 133 (167) T ss_dssp GGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCEECSBSEEEECTTEEEEEEEECCSCEEEEEEESSTH T ss_pred CCCEEECCCCEEEEEEEECCCCCCCCEEECCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEECCHHH T ss_conf 77569726998999999568888754487896689998289237998718999937922999998699857999767067 Q ss_pred CCCCCCCEEEEEECC Q ss_conf 576113658999708 Q gi|254780474|r 227 GRGFSHMRFKFYGKS 241 (332) Q Consensus 227 G~ghs~M~f~v~v~s 241 (332) =.-...|...+.+.. T Consensus 134 h~~~~Gm~~~~~v~~ 148 (167) T 2zoo_A 134 RAFNKGALAMLKVEG 148 (167) T ss_dssp HHHTTSCEEEEEEES T ss_pred HHHHCCCEEEEEEEC T ss_conf 677268779999716 No 66 >>2uxt_A Protein SUFI, SUFI; periplasmic, cupredoxin-like, FTS mutant suppressor, oxidoreductase; 1.9A {Escherichia coli} PDB: 2uxv_A (A:146-312) Probab=49.54 E-value=16 Score=16.04 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=49.7 Q ss_pred EEEEECCCEEEEEEEECCCCHHC---CCHHHCC-----------------EECCCCCCCEEEEEEECCCEEEEEECCCCC Q ss_conf 68963698289999835810110---2201074-----------------031169851489999427748966613326 Q gi|254780474|r 167 ELVVPIDRPLEFRITASSVMNSF---YIPGLAG-----------------QIYAMAGMETKLHAVMNKKGAYSGFSANYS 226 (332) Q Consensus 167 eL~lPv~~pV~f~ltS~DViHSF---~IP~l~~-----------------k~daiPG~~t~l~~~a~~~G~y~G~cae~c 226 (332) .+..-.|+.++|++-.......| +|..... .+..=||.+-.+-+.++++|.|.-.|.... T Consensus 48 p~~~~~g~~~R~RliNa~~~~~~~~~~i~g~~~~via~DG~~~~~~~~~~~l~i~pgeR~dv~v~~~~~~~~~~~~~~~~ 127 (167) T 2uxt_A 48 PYVEVSRGWVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITCGEAA 127 (167) T ss_dssp CEEEECSSEEEEEEEECCSSCCEEEEETTSCCEEEEECSSSEEEEEEEESSEEECTTCEEEEEEECTTCCCEEEEC---- T ss_pred CEEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCC T ss_conf 11733586899840031356403479825871699976898100047841379868877999999189984799933665 Q ss_pred CCCCCCCEE Q ss_conf 576113658 Q gi|254780474|r 227 GRGFSHMRF 235 (332) Q Consensus 227 G~ghs~M~f 235 (332) +.+...+.. T Consensus 128 ~~~~~~~~~ 136 (167) T 2uxt_A 128 SIVDRIRGF 136 (167) T ss_dssp --------- T ss_pred CCCCCCCCC T ss_conf 444445665 No 67 >>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} (A:) Probab=48.86 E-value=14 Score=16.39 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=21.2 Q ss_pred ECCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHH Q ss_conf 7088999999999860724-569899999761021 Q gi|254780474|r 239 GKSEKGFEDWISKVKRQGT-FLNRQEYLLLKKPSE 272 (332) Q Consensus 239 v~s~~~f~~Wv~~~ka~~~-~l~~~~y~~l~~ps~ 272 (332) -+|++||..|++.++..+. .|-...-.++.+|.+ T Consensus 60 ~Ls~eEf~~W~~a~~~hge~aLRat~lq~yrq~ye 94 (95) T 2jrt_A 60 SLSEEEFALWRSAVAAHGEKALKVTMIQKYRQLHH 94 (95) T ss_dssp TCCHHHHHHHHHHTTTCCTTSCCTTHHHHHHHSCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999998299998878999999862 No 68 >>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} (A:60-117) Probab=47.63 E-value=17 Score=15.84 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.8 Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHHCCCCCC Q ss_conf 6113658999708899999999986072456 Q gi|254780474|r 229 GFSHMRFKFYGKSEKGFEDWISKVKRQGTFL 259 (332) Q Consensus 229 ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l 259 (332) |+..|.=-...++++++++|.++.++.+-+. T Consensus 2 g~~~~~HiAf~V~~~~~~~~~~~L~~~gv~~ 32 (58) T 1npb_A 2 QESDYTHYAFTVAEEDFEPLSQRLEQAGVTI 32 (58) T ss_dssp GGSCSCEEEEECCHHHHHHHHHHHHHTTCCE T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCEE T ss_conf 7888662466403877999999999889828 No 69 >>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} (A:311-552) Probab=45.22 E-value=18 Score=15.58 Aligned_cols=50 Identities=16% Similarity=0.031 Sum_probs=38.2 Q ss_pred HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHH Q ss_conf 107403116985148999942774896661332657611365899970889 Q gi|254780474|r 193 GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 193 ~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~ 243 (332) ..+--+..-||-...+.|++|.+|.|.--|--. --..+.|...+++..++ T Consensus 168 ~~rDtv~i~pg~~~~i~f~adnpG~w~~HCHi~-~H~~~GM~~~~~v~~~~ 217 (242) T 1aoz_A 168 PLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIE-PHLHMGMGVVFAEGVEK 217 (242) T ss_dssp CEESEEEECTTEEEEEEEECCSCEEEEEEESSH-HHHHTTCEEEEEECGGG T ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEECCCH-HHHHCCCCEEEEECCHH T ss_conf 721389969998899999918987617801707-88767493999986100 No 70 >>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} (A:166-213) Probab=44.85 E-value=7.6 Score=18.26 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=15.8 Q ss_pred EEEEEECC--------CCCCCCEEEEEECC Q ss_conf 69999626--------78774306896369 Q gi|254780474|r 152 KWLFLLPE--------QQVAIINELVVPID 173 (332) Q Consensus 152 ~W~F~YP~--------~giatvneL~lPv~ 173 (332) .|.|.|-| +...+..|+.+|+. T Consensus 13 ~w~fdykdsqiilyp~~~~e~leeialpvs 42 (48) T 2c1i_A 13 AWNFDYKDSQIILYPSPVVENLEEIALPVS 42 (48) T ss_dssp GCCEEEETTEEEEC---------CEEEEGG T ss_pred CCCEEECCCCEEEEECCCCCCCEEEEECHH T ss_conf 242376178179981688877504772078 No 71 >>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygenase; structural genomics, PSI-2, protein structure initiative; 1.82A {Burkholderia phytofirmans psjn} (A:69-141) Probab=41.55 E-value=21 Score=15.20 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=29.9 Q ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCC Q ss_conf 26576113658999708899999999986072456 Q gi|254780474|r 225 YSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFL 259 (332) Q Consensus 225 ~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l 259 (332) |...+.+.+.+.+.+.|+++-|++.+++++.+.+. T Consensus 1 ~a~~~~~~~~laf~v~s~e~Vd~~~~~~~~~G~~i 35 (73) T 2rbb_A 1 FSETSGIKFLLNFDVDTKEAVDKLVPVAIAAGATL 35 (73) T ss_dssp GCCCBSCCEEEEEECSCHHHHHHHHHHHHHTTCEE T ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEE T ss_conf 42136870487541133314555555420322034 No 72 >>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} (A:) Probab=39.38 E-value=22 Score=14.98 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=47.9 Q ss_pred EEEEEEEECCCCHHCCCHHH-----CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHH Q ss_conf 28999983581011022010-----7403116985148999942774896661332657611365899970889999999 Q gi|254780474|r 175 PLEFRITASSVMNSFYIPGL-----AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWI 249 (332) Q Consensus 175 pV~f~ltS~DViHSF~IP~l-----~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv 249 (332) =|++.+-..+--+.+.|-+. ++|-|.+.+-.|..++....-+.-+-..-++ .|+..| +++||+.|. T Consensus 55 FVRv~ig~~~~~~~Yri~qI~gv~~~~k~Y~~~~~~T~~~L~l~~g~~~~~~~l~~----iSn~~f-----te~E~~~w~ 125 (153) T 2bze_A 55 FVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEF----VSNQEF-----TESEFMKWK 125 (153) T ss_dssp EEEEESSTTSSSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESSSCEEEECGGG----BCCSCC-----CHHHHHHHH T ss_pred EEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEE----EECCCC-----CHHHHHHHH T ss_conf 89997289899872699999755506863545886353699998789622887688----748999-----999999999 Q ss_pred HHHHCCCCCCCH Q ss_conf 998607245698 Q gi|254780474|r 250 SKVKRQGTFLNR 261 (332) Q Consensus 250 ~~~ka~~~~l~~ 261 (332) +..+.++..+-. T Consensus 126 ~~~~~~~~~~pt 137 (153) T 2bze_A 126 EAMFSAGMQLPT 137 (153) T ss_dssp HHHHHHTCCCCB T ss_pred HHHHHCCCCCCC T ss_conf 999966999999 No 73 >>1pgs_A Peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase F; endoglycosidase; 1.80A {Elizabethkingia meningoseptica} (A:138-314) Probab=39.28 E-value=19 Score=15.46 Aligned_cols=33 Identities=15% Similarity=-0.062 Sum_probs=20.5 Q ss_pred CCCCCEEEEEEECCCEEE--------EEECCCCCCCCCCCC Q ss_conf 698514899994277489--------666133265761136 Q gi|254780474|r 201 MAGMETKLHAVMNKKGAY--------SGFSANYSGRGFSHM 233 (332) Q Consensus 201 iPG~~t~l~~~a~~~G~y--------~G~cae~cG~ghs~M 233 (332) +|.-..+..+.|--.|-= ...|||||=..|-.+ T Consensus 38 ~P~~t~kv~l~aiITGHG~~~~~dsD~~~CaEfC~ttH~f~ 78 (177) T 1pgs_A 38 LPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWCFRTHTIA 78 (177) T ss_dssp CCTTCSEEEEEEEEEEECEEEEEETTTEEEETTSCEEEEEE T ss_pred CCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEECCEEEEEE T ss_conf 89775369999999873123677888865412414116999 No 74 >>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor} (A:185-343) Probab=39.11 E-value=22 Score=14.95 Aligned_cols=78 Identities=9% Similarity=-0.066 Sum_probs=49.4 Q ss_pred CEEEEEECCCEEEEEEEECCC-CHHCCC-------HHHCCE------------ECCCCC---CCEEEEEEECCCEEEEEE Q ss_conf 306896369828999983581-011022-------010740------------311698---514899994277489666 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSV-MNSFYI-------PGLAGQ------------IYAMAG---METKLHAVMNKKGAYSGF 221 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DV-iHSF~I-------P~l~~k------------~daiPG---~~t~l~~~a~~~G~y~G~ 221 (332) ...|.+..|..|+++++.+.. -|+|-+ ..-++. .+..++ ......+.++.+|+|.-. T Consensus 24 ~p~i~~~~Gd~v~i~~~N~~~~~h~~h~Hg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~H 103 (159) T 3cg8_A 24 GPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYH 103 (159) T ss_dssp CCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEE T ss_pred CCCCCCCCCCEEEEEEEEECCCEEEEEEECCEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEE T ss_conf 66431368988999999403430479992866799987776787778740207997998328999995778998658997 Q ss_pred CCCCCCCCCCCCEEEEEECCHH Q ss_conf 1332657611365899970889 Q gi|254780474|r 222 SANYSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 222 cae~cG~ghs~M~f~v~v~s~~ 243 (332) |-.. +.--+.|...+++.+++ T Consensus 104 cH~~-~H~~~Gm~g~~iV~~~~ 124 (159) T 3cg8_A 104 CHVQ-SHSDMGMVGLFLVKKPD 124 (159) T ss_dssp ECSH-HHHHTTCEEEEEEECTT T ss_pred CCCH-HHHHCCCCEEEEEECCC T ss_conf 4888-99977995799998788 No 75 >>2q9o_A Laccase-1; multicopper oxidase, 2- oxohistidine, oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} (A:161-335) Probab=35.88 E-value=25 Score=14.60 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=45.0 Q ss_pred EEEEEECCCEEEEEEEECCCC---------HHCCCHHHC---------CEECCCCCCCEEEEEEEC-CCEEEEEECCCC Q ss_conf 068963698289999835810---------110220107---------403116985148999942-774896661332 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSVM---------NSFYIPGLA---------GQIYAMAGMETKLHAVMN-KKGAYSGFSANY 225 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DVi---------HSF~IP~l~---------~k~daiPG~~t~l~~~a~-~~G~y~G~cae~ 225 (332) ..+.+..|+.++|+|-..... |+|+|-+.- -.+..-||.+-.+-++++ ++|.|...|... T Consensus 55 ~~~~~~~g~~~RlRliNa~~~~~~~l~i~gh~~~vva~DG~~v~p~~~~~l~i~~GqR~dvlv~~~~~~g~~~i~~~~~ 133 (175) T 2q9o_A 55 ANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFG 133 (175) T ss_dssp CEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCSSEEEEEEECC T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCEECCCCCEECCEECCEEECCCCCEEEEEEEEECCCCCEEEEEECC T ss_conf 5689756977888786047774047663554431255788302130025695268727999998102897127988506 No 76 >>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii} (A:) Probab=33.30 E-value=8.8 Score=17.81 Aligned_cols=107 Identities=9% Similarity=0.135 Sum_probs=64.7 Q ss_pred EEEEECCCCC----------CCCEEEEEECCCEEE-EEEEECC-----CCHHCCCHH--HCCEECCCC-C-CCEEEEEEE Q ss_conf 9999626787----------743068963698289-9998358-----101102201--074031169-8-514899994 Q gi|254780474|r 153 WLFLLPEQQV----------AIINELVVPIDRPLE-FRITASS-----VMNSFYIPG--LAGQIYAMA-G-METKLHAVM 212 (332) Q Consensus 153 W~F~YP~~gi----------atvneL~lPv~~pV~-f~ltS~D-----ViHSF~IP~--l~~k~daiP-G-~~t~l~~~a 212 (332) .-|.||-++. -...++..--|-|+. +...+.+ ..+...-.+ +-.-...+. | -.+.++|.. T Consensus 11 ~~~v~~TED~~KV~~Ai~nifp~~~~eg~~gn~i~il~~~~~~~~~l~~f~~~l~~~~ild~~r~~L~~~~~~~~~~~rl 90 (138) T 3d7a_A 11 EAYVYPTEDIRKVKKAMLNLIPGLQFEAFDKGEYVILVGRTKDKRALQRLYELFRGQQILDTARMMLEEGYFGEEIIIKV 90 (138) T ss_dssp EEEECTTBCHHHHHHHHHHHSTTCEEEEEECSSSEEEEEEECCTTTTHHHHHHHHHTTCHHHHHHHHHHTEETTEEEEEE T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 99985878989999999986898402220589824799997571679999999986700899999998272288799999 Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCC Q ss_conf 27748966613326576113658999708899999999986072456 Q gi|254780474|r 213 NKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFL 259 (332) Q Consensus 213 ~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l 259 (332) ||.-.|.|.++=--|..-...++++.+-+++++-.|++-.-..|.++ T Consensus 91 ~KQaAy~G~v~~~~~~dli~I~v~i~~~~~~~~id~lap~t~~G~pv 137 (138) T 3d7a_A 91 HKQVAYVGKVNFNEDSPLGPITITIRTKEPQKLMKWLAPRTKDGVPI 137 (138) T ss_dssp EHHHHHTTCCCCCSCCTTCEEEEEEECSCHHHHHHHHSCCEETTEEC T ss_pred EHHHHHCCCEECCCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCEEC T ss_conf 75897589654667899667899998089899998723557798048 No 77 >>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170) Probab=30.57 E-value=26 Score=14.53 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=11.2 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 08899999999986 Q gi|254780474|r 240 KSEKGFEDWISKVK 253 (332) Q Consensus 240 ~s~~~f~~Wv~~~k 253 (332) +++++|.+|.+... T Consensus 1 mt~e~F~~W~~r~g 14 (81) T 2auw_A 1 VSHEXFGDWXHRNN 14 (81) T ss_dssp CCHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHCC T ss_conf 88999999999859 No 78 >>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} (A:244-283) Probab=29.78 E-value=30 Score=14.09 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=10.7 Q ss_pred EECCHHHHHHHHHH Q ss_conf 97088999999999 Q gi|254780474|r 238 YGKSEKGFEDWISK 251 (332) Q Consensus 238 ~v~s~~~f~~Wv~~ 251 (332) ++-++|.|++|+++ T Consensus 23 isrd~e~F~awl~e 36 (40) T 1poi_A 23 VSKTQEDFDAFCKE 36 (40) T ss_dssp HTTSHHHHHHHHHH T ss_pred HHCCHHHHHHHHHH T ss_conf 84598999999999 No 79 >>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (A:) Probab=28.03 E-value=33 Score=13.72 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999885 Q gi|254780474|r 52 IAVALMLLIVVPVFFSILFFAWK 74 (332) Q Consensus 52 ~~~~l~liV~v~V~~l~~~~~~k 74 (332) +...++.+..+.+++++.+.+|| T Consensus 13 wiIi~s~i~GlllLali~~~L~K 35 (54) T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWK 35 (54) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 58899999999999999999998 No 80 >>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* (A:325-538) Probab=27.63 E-value=28 Score=14.23 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=57.1 Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCC--CEEEEEEECCCEEEEEECCC Q ss_conf 9984369999626787743068963698289999835810110220107403116985--14899994277489666133 Q gi|254780474|r 147 VALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGM--ETKLHAVMNKKGAYSGFSAN 224 (332) Q Consensus 147 ~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~--~t~l~~~a~~~G~y~G~cae 224 (332) .+.+|.|........ ...+...+-.++|+.++-..+..-|.+-++...=+-. ++++.+.+...|..-|.+.- T Consensus 17 L~~~W~~~~~p~~~~------~~~~~~~~g~l~l~~~~~~~~~~~~~~l~~r~~~~~f~~~t~v~~~~~~~~~~aGL~v~ 90 (214) T 3c2u_A 17 LNINFQTLRIPFSEH------LGSLTARPGFLRLYGRESLQSKFTQAHIARRWQSFNFDAGTSVEFSPNSFQQMAGLTCY 90 (214) T ss_dssp CCTTCEEESSCCCTT------TEESSSSTTSEEEECBSCTTCSSCCEEEEEECCSSEEEEEEEEECCCSSTTEEEEEEEE T ss_pred CCCCCCCCCCCCCCC------EEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEE T ss_conf 534473135788653------55661788348754755666556762567862157248999953587654653168999 Q ss_pred CCCCCCCCCEE Q ss_conf 26576113658 Q gi|254780474|r 225 YSGRGFSHMRF 235 (332) Q Consensus 225 ~cG~ghs~M~f 235 (332) ++-..|....+ T Consensus 91 ~~~~~~~~~~~ 101 (214) T 3c2u_A 91 YNTENWSSIHV 101 (214) T ss_dssp EETTEEEEEEE T ss_pred ECCCCCEEEEE T ss_conf 85788099999 No 81 >>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii} (A:) Probab=27.57 E-value=34 Score=13.67 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHCCCC Q ss_conf 999999988530467 Q gi|254780474|r 65 FFSILFFAWKYRSTN 79 (332) Q Consensus 65 ~~l~~~~~~kyR~~~ 79 (332) +++++|..||+|+++ T Consensus 32 igLT~YA~~r~~~~~ 46 (46) T 1waz_A 32 IGLTIYAIQRKRQAD 46 (46) T ss_dssp HHHHHHHHHHHHCCC T ss_pred HHHHHHHHHHHHCCC T ss_conf 999999999987069 No 82 >>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreductase; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} (A:129-297) Probab=27.31 E-value=34 Score=13.64 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=42.1 Q ss_pred EEEEEECCCEEEEEEEECCC--CHHCCCHHHCC----------------EECCCCCCCEEEEEEECCCEEEEEECC Q ss_conf 06896369828999983581--01102201074----------------031169851489999427748966613 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSV--MNSFYIPGLAG----------------QIYAMAGMETKLHAVMNKKGAYSGFSA 223 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DV--iHSF~IP~l~~----------------k~daiPG~~t~l~~~a~~~G~y~G~ca 223 (332) -.+.+..|+.++|+|-...- .+.|.|..-.. .+..-||.+-.+-++++++|.+.-.|. T Consensus 50 p~~~v~~Ge~~R~RiiN~~~~~~~~l~i~g~~~~vi~~DG~~~~p~~~~~~~i~pg~R~dv~v~~~~~~~~~~~~~ 125 (169) T 1zpu_A 50 LTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDKNFAIM 125 (169) T ss_dssp CEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCSSCCEEEE T ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEE T ss_conf 4220479865888761465540011020135542111324422222068999758874699998156888627877 No 83 >>2jhp_A VP4 core protein; guanylyltransferase, viral capping enzyme, virion protein, methyltransferase, viral protein; HET: SAH GUN; 2.5A {Bluetongue virus 10} PDB: 2jh8_A* 2jha_A* 2jhc_A* 2jh9_A* (A:95-165,A:399-514) Probab=26.58 E-value=32 Score=13.88 Aligned_cols=30 Identities=33% Similarity=0.759 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHCCC-CCCCCCCCCCCCCCEE Q ss_conf 99999998853046-7777778753456612 Q gi|254780474|r 65 FFSILFFAWKYRST-NKKARYDPKWCHSTLL 94 (332) Q Consensus 65 ~~l~~~~~~kyR~~-~~~a~~~p~~~hs~~l 94 (332) .+.+++.+|||-.. +++-.|+|.|..|-.+ T Consensus 144 nGaiLfLmWkyp~~~~k~l~YDPaWA~~faV 174 (187) T 2jhp_A 144 NGAILFLMWRYPDIVKKDLTYDPAWAMNFAV 174 (187) T ss_dssp HHHHHHHHHHCTTTSCTTCCCCHHHHTTEEE T ss_pred CCEEEEEEHHCCCCCCCCCCCCHHHHHHEEE T ss_conf 7503432201467457777778778751338 No 84 >>2qt6_A Laccase; beta barrel, oxidoreductase; HET: CBS BMA NAG MAN TLA; 1.50A {Lentinus tigrinus} PDB: 1gyc_A* 2vdz_A* 1kya_A* 3fpx_A* 2ve0_A* 2vds_A* 2hrg_A* 2hrh_A* 3div_A* 2h5u_A* 2hzh_A* (A:137-302) Probab=26.40 E-value=35 Score=13.53 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=49.3 Q ss_pred CEEEEEECCCEEEEEEEECC--CCHHCCCHHHC----------------CEECCCCCCCEEEEEEECCCE-EEEEE-CCC Q ss_conf 30689636982899998358--10110220107----------------403116985148999942774-89666-133 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS--VMNSFYIPGLA----------------GQIYAMAGMETKLHAVMNKKG-AYSGF-SAN 224 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D--ViHSF~IP~l~----------------~k~daiPG~~t~l~~~a~~~G-~y~G~-cae 224 (332) ...+.++.|+.|+|+|.... -.|+|.+...- -....-||.+-.+-++++++| .|.-. |.. T Consensus 49 ~~~~~v~~G~~vRlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~i~pgqr~dv~v~~~~~~~~~~~~~~~~ 128 (166) T 2qt6_A 49 LAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQDVDNYWIRANPN 128 (166) T ss_dssp CCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEEESEEEECTTCEEEEEEECCSCSSEEEEEEEES T ss_pred CCEEEECCCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCEEEEEECEEEEECCCCEEEEEEECCCCCCEEEEECCC T ss_conf 54499716978989997616785426786465226884166320257615799705875689996068888379993257 Q ss_pred CCCCCCCCCEEEEE Q ss_conf 26576113658999 Q gi|254780474|r 225 YSGRGFSHMRFKFY 238 (332) Q Consensus 225 ~cG~ghs~M~f~v~ 238 (332) .-..+.+.+....+ T Consensus 129 ~~~~~~~~~~~~~i 142 (166) T 2qt6_A 129 FGTTGFADGVNSAI 142 (166) T ss_dssp SSSCSCGGGTTEEE T ss_pred CCCCCCCCCCCEEE T ss_conf 67655557763267 No 85 >>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A (A:) Probab=26.17 E-value=36 Score=13.50 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=35.0 Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHHCCCCEEECCCCCCHHHHHH Q ss_conf 0889999999998607245698999997---610212632172047835426873 Q gi|254780474|r 240 KSEKGFEDWISKVKRQGTFLNRQEYLLL---KKPSERDSVRYFSPIEKGLYYSIL 291 (332) Q Consensus 240 ~s~~~f~~Wv~~~ka~~~~l~~~~y~~l---~~ps~~~~~~~f~~~~~~lf~~i~ 291 (332) ||+++|++=+..++..+..++.+...+| .++....+ |..-.|+.|+.+- T Consensus 1 mse~~F~~A~~~v~~~~~~~~~~~~L~LY~lyKQat~G~---~~~~~p~~~~~~~ 52 (87) T 2cb8_A 1 MSQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGD---INTERPGMLDFTG 52 (87) T ss_dssp -CHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCS---CCSCCCCTTCHHH T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC---CCCCCCCCCCHHH T ss_conf 989999999999985779958799999999999982289---8888998344999 No 86 >>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} (A:97-150) Probab=25.21 E-value=37 Score=13.38 Aligned_cols=31 Identities=13% Similarity=0.400 Sum_probs=23.7 Q ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHCCCC Q ss_conf 5761136589997088999999999860724 Q gi|254780474|r 227 GRGFSHMRFKFYGKSEKGFEDWISKVKRQGT 257 (332) Q Consensus 227 G~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~ 257 (332) +..-+.-...|-+.|+||...||.+.|...+ T Consensus 22 ~p~~~~~sLDvaAds~Eel~dWv~KIREaaq 52 (54) T 2fjl_A 22 MPSVAQWSLDVAADSQEELQDWVKKIREVAQ 52 (54) T ss_dssp CTTTSSCCEEEEESSHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHH T ss_conf 6998852188872549999999999999984 No 87 >>2qt6_A Laccase; beta barrel, oxidoreductase; HET: CBS BMA NAG MAN TLA; 1.50A {Lentinus tigrinus} PDB: 1gyc_A* 2vdz_A* 1kya_A* 3fpx_A* 2ve0_A* 2vds_A* 2hrg_A* 2hrh_A* 3div_A* 2h5u_A* 2hzh_A* (A:303-477) Probab=24.24 E-value=39 Score=13.25 Aligned_cols=55 Identities=5% Similarity=-0.130 Sum_probs=40.2 Q ss_pred CCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHH Q ss_conf 02201074031169851489999427748966613326576113658999708899 Q gi|254780474|r 189 FYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKG 244 (332) Q Consensus 189 F~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~ 244 (332) +.-|....-...-||-...+.|.++.+|.|.--|-..- --=+.|-..+.|.+++. T Consensus 117 ~~~~~~~dt~~~~pg~~~~i~f~a~~pG~w~~HCHi~~-H~~~GM~~~~~V~~~~~ 171 (175) T 2qt6_A 117 PVWRDVVSTGTPQAGDNVTIRFQTDNPGPWFLHCHIDF-HLDAGFAVVMAEDIPNT 171 (175) T ss_dssp CCEESEEECCCTTTTCEEEEEEECCCCEEEEEEESSHH-HHHTTCEEEEEETHHHH T ss_pred CCEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCHH-HHHCCCCEEEEECCCCC T ss_conf 85340598226799958999999389885388478567-87584909999858540 No 88 >>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis} (A:) Probab=23.95 E-value=39 Score=13.23 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=11.7 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 08899999999986 Q gi|254780474|r 240 KSEKGFEDWISKVK 253 (332) Q Consensus 240 ~s~~~f~~Wv~~~k 253 (332) +++++|++|++++- T Consensus 14 v~~~~fe~Wv~etD 27 (105) T 2jdj_A 14 AQADAFEFWVQNVD 27 (105) T ss_dssp GGHHHHHHHHHHTH T ss_pred CCHHHHHHHHHHCC T ss_conf 99899999998664 No 89 >>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} (A:82-144) Probab=23.14 E-value=41 Score=13.11 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=25.3 Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCCCC Q ss_conf 1136589997088999999999860724569 Q gi|254780474|r 230 FSHMRFKFYGKSEKGFEDWISKVKRQGTFLN 260 (332) Q Consensus 230 hs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l~ 260 (332) -+.+.+...+.+.+|.|++.+++++.+.+.. T Consensus 4 ~~~~~~~~~~~s~~dVd~~~~~~~~~G~~i~ 34 (63) T 2kjz_A 4 GGGGELAFRVENDAQVDETFAGWKASGVAML 34 (63) T ss_dssp SSSCEEEEECSSHHHHHHHHHHHHHTTCCCC T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCEEE T ss_conf 8604763101243038999999986698285 No 90 >>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} (A:1-19,A:215-397) Probab=21.72 E-value=43 Score=12.92 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=32.1 Q ss_pred EEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCC Q ss_conf 068963698289999835810110220107403116985 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGM 204 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~ 204 (332) .-+++|+|-|+.+.-+|+=.|-.|.|-+=.-..+-..|+ T Consensus 103 ~v~VvPaghP~~~~a~snL~iv~F~vnA~~N~r~~laGr 141 (202) T 2phl_A 103 DVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGK 141 (202) T ss_dssp CEEEECTTCCEEEEESSSEEEEEEEESCTTCCEEESSSS T ss_pred CEEEECCCCEEEEEECCCEEEEEEEECCCCCCEEECCCC T ss_conf 689999999288980798079999942788710114677 No 91 >>2q9o_A Laccase-1; multicopper oxidase, 2- oxohistidine, oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} (A:336-525) Probab=21.67 E-value=43 Score=12.91 Aligned_cols=49 Identities=12% Similarity=-0.034 Sum_probs=35.7 Q ss_pred HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHH Q ss_conf 07403116985148999942774896661332657611365899970889 Q gi|254780474|r 194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 194 l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~ 243 (332) .+--+..-||-...+.+.||.+|.|.--|.-+- --.+.|-..+.+.+++ T Consensus 140 ~kDtv~v~p~~~~~i~f~ad~pG~w~~HCHil~-H~~~GM~~~~~V~~~d 188 (190) T 2q9o_A 140 RRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAW-HVSGGLSVDFLERPAD 188 (190) T ss_dssp EESEEEECTTSEEEEEEECCSCEEEEEEECCHH-HHHTTCEEEEEECHHH T ss_pred CEEEEEECCCCEEEEEEEECCCEEEEEECCCHH-HHHCCCCEEEEECHHH T ss_conf 200899599988999999089766589358567-8767597998878778 No 92 >>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} (A:) Probab=21.22 E-value=23 Score=14.83 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=10.6 Q ss_pred EEEECCCEEEEE--EEECCCCHHCC Q ss_conf 896369828999--98358101102 Q gi|254780474|r 168 LVVPIDRPLEFR--ITASSVMNSFY 190 (332) Q Consensus 168 L~lPv~~pV~f~--ltS~DViHSF~ 190 (332) ...|.|+|..-. ++.-+++...| T Consensus 311 ~~SasD~p~qy~~~l~d~~~i~~g~ 335 (581) T 2j5l_A 311 ELSASDQPKQYEQHLTDYEKIKEGF 335 (581) T ss_dssp ------------------------- T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 4584337320000233145554344 No 93 >>1kv7_A CUEO, probable blue-copper protein YACK; multi-copper oxidase, T1 (blue) copper, oxidoreductase; 1.40A {Escherichia coli} (A:308-488) Probab=21.10 E-value=44 Score=12.83 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=41.0 Q ss_pred CCEEEEEECCCEEEEEEEECCC--CHHCCCHHH-------CC---------EECC--CCCCCEE----EEEEECCCEEEE Q ss_conf 4306896369828999983581--011022010-------74---------0311--6985148----999942774896 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSV--MNSFYIPGL-------AG---------QIYA--MAGMETK----LHAVMNKKGAYS 219 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DV--iHSF~IP~l-------~~---------k~da--iPG~~t~----l~~~a~~~G~y~ 219 (332) ..+.+.++.|..|++.+....- -|+|-+-.- ++ ..|. +|...+. +.+.|+.+|.|- T Consensus 83 ~~~~~~~~~G~~v~~~l~n~~~~~~Hp~HlHg~~f~v~~~~~~~~~~~~~~~~Dtv~v~~~~~~~~~v~~~~a~~pG~w~ 162 (181) T 1kv7_A 83 NKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYM 162 (181) T ss_dssp TCCSEECCSSSCEEEEEECTTCCCCEEEEETTCCBEEEEBTTBCCCGGGSSSBSEEEESSSEEEEEECCCSCCCGGGCEE T ss_pred CCCEEEECCCCEEEEEEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCEEE T ss_conf 87208816998999999959999987979669748999547975875568876369969996799999976799984389 Q ss_pred EECCCCC Q ss_conf 6613326 Q gi|254780474|r 220 GFSANYS 226 (332) Q Consensus 220 G~cae~c 226 (332) --|--+- T Consensus 163 ~HCHi~~ 169 (181) T 1kv7_A 163 AHCHLLE 169 (181) T ss_dssp EEESSHH T ss_pred EECCCHH T ss_conf 8378079 No 94 >>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, structural genomics, protein structure initiative; 1.40A {Fulvimarina pelagi HTCC2506} (A:67-127) Probab=20.97 E-value=45 Score=12.81 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=24.3 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCC Q ss_conf 13658999708899999999986072456 Q gi|254780474|r 231 SHMRFKFYGKSEKGFEDWISKVKRQGTFL 259 (332) Q Consensus 231 s~M~f~v~v~s~~~f~~Wv~~~ka~~~~l 259 (332) ....+...+.|+++-|+|.+++++.+.+. T Consensus 3 ~~~hiaf~~~s~e~Vd~~~~~~~~~G~~i 31 (61) T 3bqx_A 3 GSXALAHNVRAETEVAPLXERLVAAGGQL 31 (61) T ss_dssp CSCEEEEECSSGGGHHHHHHHHHHTTCEE T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCCE T ss_conf 43389999678899789999998354856 No 95 >>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} (A:) Probab=20.70 E-value=45 Score=12.78 Aligned_cols=34 Identities=6% Similarity=0.038 Sum_probs=27.7 Q ss_pred EEEEEECCCEEEEEECCC--CCCCCCCCCEEEEEECCHH Q ss_conf 899994277489666133--2657611365899970889 Q gi|254780474|r 207 KLHAVMNKKGAYSGFSAN--YSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 207 ~l~~~a~~~G~y~G~cae--~cG~ghs~M~f~v~v~s~~ 243 (332) ...++.+++|.|+-.|+. -|..| |++.|.|.+.. T Consensus 71 ~~~v~l~~~g~~yFic~~~~hC~~G---mk~~I~v~~~~ 106 (109) T 1ws8_A 71 ADSIPLKRPGTFYFLCGIPGHCQLG---QKVEIKVDPGS 106 (109) T ss_dssp EEEEECCSSEEEEEECCSTTTTTTT---CEEEEEECC-- T ss_pred CCEEEECCCCCEEEECCCCCCCCCC---CEEEEEEECCC T ss_conf 8089966883789988997802079---96899995799 No 96 >>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* (A:1-178) Probab=20.38 E-value=46 Score=12.73 Aligned_cols=62 Identities=6% Similarity=0.126 Sum_probs=37.3 Q ss_pred CCCHHHHHHHHHHHH------CCCCEEECCCCCCHHHHHHCCCCCCCCCCCC-HHHCCCCCCCCCHHHC Q ss_conf 569899999761021------2632172047835426873152444885660-2102466688523440 Q gi|254780474|r 258 FLNRQEYLLLKKPSE------RDSVRYFSPIEKGLYYSILNLCVHPGKICMD-EMMRIDALGGGGMRGI 319 (332) Q Consensus 258 ~l~~~~y~~l~~ps~------~~~~~~f~~~~~~lf~~i~~~~~~~~~~~~~-~~m~~~~~~g~~~~~~ 319 (332) .-|.++|..|.+--+ ..+.-+|-+++|.+|..|+..--..|-.... .-..+..-=|...++. T Consensus 86 ~~~~~~y~~L~~~l~~~e~~~~~~~ifYlAvpP~~f~~i~~~l~~~~l~~~~~~RiviEKPfG~dl~Sa 154 (178) T 2bh9_A 86 YDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSS 154 (178) T ss_dssp SSCHHHHHHHHHHHHTTTTTTTSEEEEEECSCTTSHHHHHHHHHHHSCCSSSCEEEEECSCSCSSHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH T ss_conf 898789999999999874288776279983598998999999998558756762167614433567879 Done!