HHsearch results for GI: 254780474 and protein with PDBid: 1v54_B

>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* 3ag2_B* 3ag3_B* ...
Probab=100.00  E-value=0  Score=422.26  Aligned_cols=200  Identities=19%  Similarity=0.317  Sum_probs=170.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
                      .+..-+|++|++++..+++...+.++.+|.+.|..++.++    +.++.   ......||++||++||++|++|++++++
T Consensus         6 ql~fqd~aSp~m~~i~~fh~~~m~i~~~I~~iV~~il~~~----~~~k~---~~~~~~~~~~LEi~WTiiP~iIli~l~i   78 (227)
T 1v54_B            6 QLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLM----LTTKL---THTSTMDAQEVETIWTILPAIILILIAL   78 (227)
T ss_dssp             CCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCSC---CCCSCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCC---CCCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf             2699885898999999999999999999999999999999----86077---7553457724786433679999999999


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf             99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r  112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV  170 (332)
Q Consensus       112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l  170 (332)
                      ++++.++.+++              .++++++|+|+|+||+|.|+||+.+                     +.|+|||++
T Consensus        79 ~s~~~~~~~~~--------------~~~~~~~I~v~g~Qw~W~~~Y~~~~~~~~~s~~~~~~~~~~~~~~~~~~~n~l~l  144 (227)
T 1v54_B           79 PSLRILYMMDE--------------INNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVL  144 (227)
T ss_dssp             HHHHHHHHHHC--------------CCCCSEEEEEEEETTEEEEEECSSSCEEEEECBCCGGGCCTTCCTTTCBSSCEEE
T ss_pred             HHHHHHHHHCC--------------CCCCCEEEEEHHHHHHHHEEECCCCCCCEECCCCCHHHHCCCCCCEECCCCEEEE
T ss_conf             99999983045--------------8999777883025520440312678862004667524426587750136670796


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS  250 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~  250 (332)
                      |+|+||+|++||+|||||||||+||+|+||||||.|++|++++++|+|+|+||||||.|||.|+++|+|+++|||++|++
T Consensus       145 P~~~~V~~~~tS~DViHsf~vP~l~~k~DavPG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~v~~~~~f~~W~a  224 (227)
T 1v54_B          145 PMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSA  224 (227)
T ss_dssp             ETTSCEEEEEEESSSCEEEEEGGGTEEEEECTTCCEEEEECCSSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHH
T ss_pred             ECCCEEEEEEEECCCCHHHHCCHHCCEECCCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf             25758999998486421012032146202548761568998389667999887762832348917999988999999999


Q ss_pred             HH
Q ss_conf             98
Q gi|254780474|r  251 KV  252 (332)
Q Consensus       251 ~~  252 (332)
                      ++
T Consensus       225 ~~  226 (227)
T 1v54_B          225 SM  226 (227)
T ss_dssp             HT
T ss_pred             HH
T ss_conf             55