HHsearch results for GI: 254780474 and protein with PDBid: 1v54_B
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* 3ag2_B* 3ag3_B* ...
Probab=100.00 E-value=0 Score=422.26 Aligned_cols=200 Identities=19% Similarity=0.317 Sum_probs=170.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
.+..-+|++|++++..+++...+.++.+|.+.|..++.++ +.++. ......||++||++||++|++|++++++
T Consensus 6 ql~fqd~aSp~m~~i~~fh~~~m~i~~~I~~iV~~il~~~----~~~k~---~~~~~~~~~~LEi~WTiiP~iIli~l~i 78 (227)
T 1v54_B 6 QLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLM----LTTKL---THTSTMDAQEVETIWTILPAIILILIAL 78 (227)
T ss_dssp CCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCSC---CCCSCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCC---CCCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 2699885898999999999999999999999999999999----86077---7553457724786433679999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf 99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV 170 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l 170 (332)
++++.++.+++ .++++++|+|+|+||+|.|+||+.+ +.|+|||++
T Consensus 79 ~s~~~~~~~~~--------------~~~~~~~I~v~g~Qw~W~~~Y~~~~~~~~~s~~~~~~~~~~~~~~~~~~~n~l~l 144 (227)
T 1v54_B 79 PSLRILYMMDE--------------INNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVL 144 (227)
T ss_dssp HHHHHHHHHHC--------------CCCCSEEEEEEEETTEEEEEECSSSCEEEEECBCCGGGCCTTCCTTTCBSSCEEE
T ss_pred HHHHHHHHHCC--------------CCCCCEEEEEHHHHHHHHEEECCCCCCCEECCCCCHHHHCCCCCCEECCCCEEEE
T ss_conf 99999983045--------------8999777883025520440312678862004667524426587750136670796
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
|+|+||+|++||+|||||||||+||+|+||||||.|++|++++++|+|+|+||||||.|||.|+++|+|+++|||++|++
T Consensus 145 P~~~~V~~~~tS~DViHsf~vP~l~~k~DavPG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~v~~~~~f~~W~a 224 (227)
T 1v54_B 145 PMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSA 224 (227)
T ss_dssp ETTSCEEEEEEESSSCEEEEEGGGTEEEEECTTCCEEEEECCSSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHH
T ss_pred ECCCEEEEEEEECCCCHHHHCCHHCCEECCCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 25758999998486421012032146202548761568998389667999887762832348917999988999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780474|r 251 KV 252 (332)
Q Consensus 251 ~~ 252 (332)
++
T Consensus 225 ~~ 226 (227)
T 1v54_B 225 SM 226 (227)
T ss_dssp HT
T ss_pred HH
T ss_conf 55