HHSEARCH alignment of GI: 254780474 and SCOP domain: d1v54b1

Alignment
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=2.8e-43  Score=324.31  Aligned_cols=114  Identities=20%  Similarity=0.430  Sum_probs=108.9

Q ss_pred             CCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCE
Q ss_conf             88668999998436999962678---------------------774306896369828999983581011022010740
Q gi|254780474|r  139 SKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQ  197 (332)
Q Consensus       139 ~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k  197 (332)
                      +++++|+|+|+||+|.|+||+.+                     +.+.|+|++|+|+||+|+|||+|||||||||+||+|
T Consensus         2 ~p~ltI~V~g~QW~W~f~Yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lP~g~~v~~~ltS~DViHsf~iP~l~~k   81 (137)
T d1v54b1           2 NPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLK   81 (137)
T ss_dssp             CCSEEEEEEEETTEEEEEECSSSCEEEEECBCCGGGCCTTCCTTTCBSSCEEEETTSCEEEEEEESSSCEEEEEGGGTEE
T ss_pred             CCCEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCEEEECCCCCCCCCCCCHHHEE
T ss_conf             99728999999721899978998862334556532125543340203670686045432256216730001243332344


Q ss_pred             ECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf             3116985148999942774896661332657611365899970889999999998
Q gi|254780474|r  198 IYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKV  252 (332)
Q Consensus       198 ~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~  252 (332)
                      +||||||.|++|++++++|+|+|+|+||||.|||.|+|+|+|+++++|++|++++
T Consensus        82 ~DaiPG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~vv~~~~f~~W~~~q  136 (137)
T d1v54b1          82 TDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASM  136 (137)
T ss_dssp             EEECTTCCEEEEECCSSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHHT
T ss_pred             EECCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHH
T ss_conf             4112893776641257987057531013087737870899994999999999966


SCOP domain information

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Cow (Bos taurus) [TaxId: 9913]