HHSEARCH alignment of GI: 254780474 and SCOP domain: d1v54b2

Alignment
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=98.77  E-value=1.2e-08  Score=77.98  Aligned_cols=83  Identities=14%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
                      .....||++|++++...++....+++..|.+.|..++.+...+.+.       ..+..||+.+|++||++|++|++++|+
T Consensus         6 ql~fQd~~Sp~m~~i~~fHd~~m~i~~~I~~~V~~~~~~~~~~~~~-------~~~~~~~~~lEiiWTiiP~lILi~ia~   78 (90)
T d1v54b2           6 QLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLT-------HTSTMDAQEVETIWTILPAIILILIAL   78 (90)
T ss_dssp             CCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC-------CCSCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             2799998998999999998049999999999999999998864564-------023446630665799889999999998


Q ss_pred             HHHHHHHHHC
Q ss_conf             9998877513
Q gi|254780474|r  112 ITWDATHRMD  121 (332)
Q Consensus       112 ~t~~~~~~ld  121 (332)
                      ++.+..+.+|
T Consensus        79 PSl~lLY~~d   88 (90)
T d1v54b2          79 PSLRILYMMD   88 (90)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
T ss_conf             9999999880


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Cytochrome c oxidase subunit II-like, transmembrane region
family: Cytochrome c oxidase subunit II-like, transmembrane region
domain: Mitochondrial cytochrome c oxidase, subunit II
species: Cow (Bos taurus) [TaxId: 9913]