HHSEARCH alignment of GI: 254780474 and SCOP domain: d2cuaa_

Alignment
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}
Probab=99.93  E-value=2.9e-26  Score=203.31  Aligned_cols=93  Identities=22%  Similarity=0.363  Sum_probs=88.6

Q ss_pred             CCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEE
Q ss_conf             88668999998436999962678774306896369828999983581011022010740311698514899994277489
Q gi|254780474|r  139 SKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAY  218 (332)
Q Consensus       139 ~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y  218 (332)
                      .+.++|+|+++||.|.          .|+|++|+|+||+|++||.||+||||||+|++|+|++||++++++|+++++|+|
T Consensus        30 ~~~~~v~v~a~~~~f~----------p~~l~vp~G~~V~~~lts~DV~H~f~ip~~~v~~d~~PG~~~~~~~~~~~~G~y   99 (122)
T d2cuaa_          30 PNQYTVYVLAFAFGYQ----------PNPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEY   99 (122)
T ss_dssp             TTEEEEEEEEETTEEE----------SSSEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEECBTBCEEEEEECCSCEEE
T ss_pred             CCEEEEEEEEEECCCC----------CCEEEEECCCEEEEEEECCCCCCEEEECCCCEEEEEECCCEEEEEEEECCCEEE
T ss_conf             9969999999965226----------888999489999999993883221576277705787068618899982443159


Q ss_pred             EEECCCCCCCCCCCCEEEEEECC
Q ss_conf             66613326576113658999708
Q gi|254780474|r  219 SGFSANYSGRGFSHMRFKFYGKS  241 (332)
Q Consensus       219 ~G~cae~cG~ghs~M~f~v~v~s  241 (332)
                      +++|+||||.||+.|+++++|++
T Consensus       100 ~~~C~~~CG~~H~~M~g~i~V~e  122 (122)
T d2cuaa_         100 RIICNQYCGLGHQNMFGTIVVKE  122 (122)
T ss_dssp             EEECCSCCSTTSTTCEEEEEEEC
T ss_pred             EEEEHHCCCCCCCCCEEEEEEEC
T ss_conf             99900115978216848999979


SCOP domain information

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]