HHSEARCH alignment of GI: 254780474 and SCOP domain: d3dtub1

Alignment
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=100.00  E-value=2.1e-42  Score=318.02  Aligned_cols=113  Identities=20%  Similarity=0.470  Sum_probs=107.4

Q ss_pred             CCCEEEEEEEEEEEEEEEECCCC--------------------------------------CCCCEEEEEECCCEEEEEE
Q ss_conf             88668999998436999962678--------------------------------------7743068963698289999
Q gi|254780474|r  139 SKPLVVEVVALDWKWLFLLPEQQ--------------------------------------VAIINELVVPIDRPLEFRI  180 (332)
Q Consensus       139 ~~~l~I~V~a~qW~W~F~YP~~g--------------------------------------iatvneL~lPv~~pV~f~l  180 (332)
                      +++++|+|+|+||+|.|+||+.+                                      +.+.|+|+||+|+||+|++
T Consensus         2 e~al~I~V~g~QW~W~f~Yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~lP~g~~v~~~l   81 (152)
T d3dtub1           2 EADVTVKVTGYQWYWGYEYPDEEISFESYMIGSPATGGDNRMSPEVEQQLIEAGYSRDEFLLATDTAMVVPVNKTVVVQV   81 (152)
T ss_dssp             CCSEEEEEEEETTEEEEEETTTTEEEEECBTTSGGGTCCSSCCHHHHHHHHHTTCCGGGTTTCBSSCEEEETTSEEEEEE
T ss_pred             CCCEEEEEEEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEEE
T ss_conf             99769999999701898837998860116626645465332586202232103667775441557708972799799999


Q ss_pred             EECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHH
Q ss_conf             83581011022010740311698514899994277489666133265761136589997088999999999
Q gi|254780474|r  181 TASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISK  251 (332)
Q Consensus       181 tS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~  251 (332)
                      ||.|||||||||+||+|+||||||.|++||+++++|+|.|+|+||||.|||.|+|+|+|+++++|++|+++
T Consensus        82 tS~DViHsf~vP~l~~k~daiPG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~vv~~~~f~~Wl~e  152 (152)
T d3dtub1          82 TGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQ  152 (152)
T ss_dssp             EESSSCEEEEEGGGTEEEEECBTCCEEEEEECCSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHH
T ss_pred             ECCCHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCEEEEECHHHCCCCCCCCEEEEEEECHHHHHHHHCC
T ss_conf             66860103332145589883799716899993699705731574118442689689999799999999739


SCOP domain information

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Rhodobacter sphaeroides [TaxId: 1063]