RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II
[Candidatus Liberibacter asiaticus str. psy62]
(332 letters)
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase,
membrane protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} (B:119-315)
Length = 197
Score = 124 bits (311), Expect = 2e-29
Identities = 75/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Query: 138 NSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQ 197
+ KP+ +EVV++DWKW F+ PEQ +A +NE+ P + P+ F++T++SVMNSF+IP L Q
Sbjct: 5 DEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQ 64
Query: 198 IYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQG 256
IYAMAGM+T+LH + N+ G Y G SA+YSG GFS M+FK F+ W++K K+
Sbjct: 65 IYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQSP 124
Query: 257 TFLNRQE-YLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGG 315
++ + L PSE + V YFS ++ L+ ++N + GK + G
Sbjct: 125 NTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEG 184
Query: 316 MRGID 320
M G+D
Sbjct: 185 MEGMD 189
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} (A:)
Length = 205
Score = 109 bits (274), Expect = 4e-25
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 11/206 (5%)
Query: 117 THRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPL 176
TH ++P PL + KP+ +EVV++DWKW F+ PEQ +A +NE+ P + P+
Sbjct: 1 THALEPSKPLA---------HDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPV 51
Query: 177 EFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFK 236
F++T++SVM+SF+IP L QIYAMAGM+T+LH + N+ G Y G A G G S M+FK
Sbjct: 52 YFKVTSNSVMHSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFK 111
Query: 237 FYGKSEKGFED-WISKVKRQGTFLNR-QEYLLLKKPSERDSVRYFSPIEKGLYYSILNLC 294
++ D W++K K+ ++ + L PSE + V YFS ++ L+ ++N
Sbjct: 112 AIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKF 171
Query: 295 VHPGKICMDEMMRIDALGGGGMRGID 320
+ GK + GM G+D
Sbjct: 172 MAHGKSMDMTQPEGEHSAHEGMEGMD 197
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein
complex, oxidoreductase; HET: DMU HEA TRD; 2.00A
{Rhodobacter sphaeroides} (B:103-262)
Length = 160
Score = 79.8 bits (196), Expect = 4e-16
Identities = 21/120 (17%), Positives = 50/120 (41%)
Query: 137 KNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAG 196
+ EV + + E +A +VVP+++ + ++T + V++S+ +P
Sbjct: 40 GGDNRMSPEVEQQLIEAGYSRDEFLLATDTAMVVPVNKTVVVQVTGADVIHSWTVPAFGV 99
Query: 197 QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQG 256
+ A+ G +L ++G + G + G ++M SE+ + W+ +
Sbjct: 100 KQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQHHHHH 159
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton
transfer, proton pumping, membrane protein, cell inner
membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A
{Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
(B:137-298)
Length = 162
Score = 65.9 bits (160), Expect = 6e-12
Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 24/151 (15%)
Query: 138 NSKPLVVEVVALDWKWLF------------------------LLPEQQVAIINELVVPID 173
N LV++ + W W + E +A N +VVP+
Sbjct: 1 NDPDLVIKAIGHQWYWSYEYPNDGVAFDALMLEKEALADAGYSEDEYLLATDNPVVVPVG 60
Query: 174 RPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM 233
+ + ++TA+ V++++ IP A + A+ G +L ++++G Y G + G ++M
Sbjct: 61 KKVLVQVTATDVIHAWTIPAFAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYM 120
Query: 234 RFKFYGKSEKGFEDWISKVKRQGTFLNRQEY 264
S++ +E W++ K +
Sbjct: 121 PIVVKAVSQEKYEAWLAGAKEEFAADASDYL 151
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET:
FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
taurus} (B:92-227)
Length = 136
Score = 58.0 bits (139), Expect = 2e-09
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 21/131 (16%)
Query: 142 LVVEVVALDWKWLFLLPEQQVAII---------------------NELVVPIDRPLEFRI 180
L V+ + W W + + + N +V+P++ + +
Sbjct: 4 LTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLV 63
Query: 181 TASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240
++ V++S+ +P L + A+ G + + ++ G Y G + G S M
Sbjct: 64 SSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELV 123
Query: 241 SEKGFEDWISK 251
K FE W +
Sbjct: 124 PLKYFEKWSAS 134
>1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase,
heme, heme-AS, integral membrane protein,
oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus
thermophilus} (B:55-168)
Length = 114
Score = 57.1 bits (137), Expect = 3e-09
Identities = 18/93 (19%), Positives = 36/93 (38%)
Query: 144 VEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAG 203
V + +++L N + VP + F+IT+ V++ F++ G + + G
Sbjct: 17 VVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEVLPG 76
Query: 204 METKLHAVMNKKGAYSGFSANYSGRGFSHMRFK 236
+ + + G Y Y G G +M
Sbjct: 77 EVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGT 109
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A
{Thermus thermophilus} (A:)
Length = 135
Score = 51.7 bits (123), Expect = 1e-07
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 16/113 (14%)
Query: 140 KPLVVEVVALDWKWLF----------------LLPEQQVAIINELVVPIDRPLEFRITAS 183
+ + V + W +L N + VP + F+IT+
Sbjct: 18 ERVDPTTVRQEGPWADPAQAVVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSP 77
Query: 184 SVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFK 236
V++ F++ G + + G + + + G Y Y G G +M
Sbjct: 78 DVIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGT 130
>1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification,
MAD, electron transfer; 2.40A {Pseudomonas nautica}
(A:453-581)
Length = 129
Score = 49.3 bits (117), Expect = 7e-07
Identities = 8/97 (8%), Positives = 22/97 (22%), Gaps = 4/97 (4%)
Query: 140 KPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIY 199
V V + + + + + + + V + F + +
Sbjct: 31 DGNKVRVYMTSVAPQYGMTDFK----VKEGDEVTVYITNLDMVEDVTHGFCMVNHGVSME 86
Query: 200 AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFK 236
+ K G Y + + M +
Sbjct: 87 ISPQQTASVTFTAGKPGVYWYYCNWFCHALHMEMVGR 123
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin
domain, CUZ site, CUA site, oxidoreductase; 1.60A
{Paracoccus denitrificans} (A:45-81,A:463-595)
Length = 170
Score = 44.7 bits (105), Expect = 2e-05
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 7/135 (5%)
Query: 114 WDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPID 173
WD R DP R + + +++ I V
Sbjct: 39 WD---RNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEG 95
Query: 174 RPLEFRITA----SSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRG 229
+ +T + + F + + M + + V G Y + +
Sbjct: 96 DEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHAL 155
Query: 230 FSHMRFKFYGKSEKG 244
MR + + ++
Sbjct: 156 HMEMRGRMLVEPKEA 170
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical
membrane antigen 1, hypothetical protein, immunoglobulin
domain; 2.9A {Plasmodium falciparum} (A:)
Length = 581
Score = 27.2 bits (60), Expect = 2.9
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 37 DPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYD 85
D Y DI + + + + + V V +IL + Y+ +YD
Sbjct: 498 DEYADIPEHKPTYDNMKIIIASSAAVAVLATILMV-YLYKRKGNAEKYD 545
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 26.3 bits (57), Expect = 5.3
Identities = 17/126 (13%), Positives = 24/126 (19%), Gaps = 17/126 (13%)
Query: 155 FLLP------EQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKL 208
F L + P R L +I Y +
Sbjct: 175 FALTMLSRVDASVPKPQAICLAPS-RELARQIMDVVTEMGKYTEVKTAFGI-KDSVPKGA 232
Query: 209 HAVMNKKGAYSGFSANYSGRG-FSHMRFKFYGKSEK-------GFEDWISKVKRQGTFLN 260
G + R K + E G D ++K N
Sbjct: 233 KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHL-LPRN 291
Query: 261 RQEYLL 266
Q L
Sbjct: 292 TQIVLF 297
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.141 0.437
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,652,732
Number of extensions: 118540
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 20
Length of query: 332
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 243
Effective length of database: 1,947,404
Effective search space: 473219172
Effective search space used: 473219172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.3 bits)