BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus str. psy62] (332 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus str. psy62] Length = 332 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/332 (100%), Positives = 332/332 (100%) Query: 1 MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLI 60 MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLI Sbjct: 1 MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLI 60 Query: 61 VVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRM 120 VVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRM Sbjct: 61 VVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRM 120 Query: 121 DPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRI 180 DPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRI Sbjct: 121 DPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRI 180 Query: 181 TASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 TASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK Sbjct: 181 TASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 Query: 241 SEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKI 300 SEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKI Sbjct: 241 SEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKI 300 Query: 301 CMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ 332 CMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ Sbjct: 301 CMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ 332 >gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 32.0 bits (71), Expect = 0.016, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 13/78 (16%) Query: 211 VMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKP 270 V+N+ + G ++G G +H+R K + G ISK TF +R+ Y LL K Sbjct: 27 VINESHLHVGHQPQFNGLGETHIRIKIVSPTFTG----ISK-----TFRHRKIYDLLHKE 77 Query: 271 SERD----SVRYFSPIEK 284 + + S+ FSP EK Sbjct: 78 IKEELHALSIEAFSPDEK 95 >gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 373 Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 23/54 (42%) Query: 246 EDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGK 299 E + K+K QG + ++ L + R ++ P Y S NL H GK Sbjct: 63 EKYHGKIKLQGVSTHIEQLFSLISFTHRKKIKNQKPQRSFFYNSFKNLHYHIGK 116 >gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str. psy62] Length = 278 Score = 23.9 bits (50), Expect = 3.8, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 15/34 (44%) Query: 175 PLEFRITASSVMNSFYIPGLAGQIYAMAGMETKL 208 PL F S V N PG GQI AG +L Sbjct: 132 PLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARL 165 >gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 23.5 bits (49), Expect = 5.0, Method: Compositional matrix adjust. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 120 MDPYAPLERISESKSIAKNSKPLVVEVV 147 D + E+I++S+ ++ N +P V+E + Sbjct: 270 QDRWRKYEKIADSRHLSNNVEPYVIEAL 297 >537021.9.peg.97_1 Length = 55 Score = 23.5 bits (49), Expect = 5.5, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 61 VVPVFFSILFFAWKYRSTNKKARYDP 86 VV VFF+IL W++ + K + P Sbjct: 29 VVSVFFNILIDIWRFLNIGKNIKKLP 54 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.141 0.437 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 214,920 Number of Sequences: 1233 Number of extensions: 8763 Number of successful extensions: 27 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 11 length of query: 332 length of database: 328,796 effective HSP length: 74 effective length of query: 258 effective length of database: 237,554 effective search space: 61288932 effective search space used: 61288932 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 38 (19.2 bits)