BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II
[Candidatus Liberibacter asiaticus str. psy62]
         (332 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 332

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/332 (100%), Positives = 332/332 (100%)

Query: 1   MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLI 60
           MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLI
Sbjct: 1   MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLI 60

Query: 61  VVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRM 120
           VVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRM
Sbjct: 61  VVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRM 120

Query: 121 DPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRI 180
           DPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRI
Sbjct: 121 DPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRI 180

Query: 181 TASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240
           TASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK
Sbjct: 181 TASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240

Query: 241 SEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKI 300
           SEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKI
Sbjct: 241 SEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKI 300

Query: 301 CMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ 332
           CMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ
Sbjct: 301 CMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ 332


>gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 101

 Score = 32.0 bits (71), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 211 VMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKP 270
           V+N+   + G    ++G G +H+R K    +  G    ISK     TF +R+ Y LL K 
Sbjct: 27  VINESHLHVGHQPQFNGLGETHIRIKIVSPTFTG----ISK-----TFRHRKIYDLLHKE 77

Query: 271 SERD----SVRYFSPIEK 284
            + +    S+  FSP EK
Sbjct: 78  IKEELHALSIEAFSPDEK 95


>gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
          Length = 373

 Score = 25.8 bits (55), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 246 EDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGK 299
           E +  K+K QG   + ++   L   + R  ++   P     Y S  NL  H GK
Sbjct: 63  EKYHGKIKLQGVSTHIEQLFSLISFTHRKKIKNQKPQRSFFYNSFKNLHYHIGK 116


>gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 278

 Score = 23.9 bits (50), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 175 PLEFRITASSVMNSFYIPGLAGQIYAMAGMETKL 208
           PL F    S V N    PG  GQI   AG   +L
Sbjct: 132 PLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARL 165


>gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 23.5 bits (49), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 120 MDPYAPLERISESKSIAKNSKPLVVEVV 147
            D +   E+I++S+ ++ N +P V+E +
Sbjct: 270 QDRWRKYEKIADSRHLSNNVEPYVIEAL 297


>537021.9.peg.97_1 
          Length = 55

 Score = 23.5 bits (49), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 61 VVPVFFSILFFAWKYRSTNKKARYDP 86
          VV VFF+IL   W++ +  K  +  P
Sbjct: 29 VVSVFFNILIDIWRFLNIGKNIKKLP 54


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.141    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,920
Number of Sequences: 1233
Number of extensions: 8763
Number of successful extensions: 27
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 11
length of query: 332
length of database: 328,796
effective HSP length: 74
effective length of query: 258
effective length of database: 237,554
effective search space: 61288932
effective search space used: 61288932
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 38 (19.2 bits)