HHsearch alignment of GI: 254780475 and MMDB domain: 2j01_6_

>2j01_6 (6:) 50S ribosomal protein L33; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}

Probab=99.88  E-value=1.2e-24  Score=149.15  Aligned_cols=54  Identities=37%  Similarity=0.442  Sum_probs=53.4

Q ss_pred             CCCCCEEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEE
Q ss_conf             987762699999517788759835488998333699413174463446688650
Q gi|254780475|r    1 MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI   54 (55)
Q Consensus         1 MaK~~r~~I~L~st~~tg~~Y~T~knk~~~~~klel~Ky~p~~~kHvl~~E~Ki   54 (55)
                      |||+.|++|.|+|++|+++||+|+||++++||||||+||||+|++||+|+|+||
T Consensus         1 Mak~~r~~i~L~ct~c~~~nY~T~KN~~~~~erLelkKycp~c~kHtlhkE~Ki   54 (54)
T 2j01_6            1 MASEVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHREVKI   54 (54)
T ss_dssp             --------CCCCCCCTTSCCCCCCCCCTTSSCSSCCCCCCCSSSCCCCCCCC--
T ss_pred             CCCCCEEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCCCCCCCEEEEEEEEC
T ss_conf             987752369998537778873497777889662689762877788442766219