RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780475|ref|YP_003064888.1| 50S ribosomal protein L33 [Candidatus Liberibacter asiaticus str. psy62] (55 letters) >gnl|CDD|179075 PRK00595, rpmG, 50S ribosomal protein L33; Validated. Length = 53 Score = 69.8 bits (172), Expect = 1e-13 Identities = 29/53 (54%), Positives = 33/53 (62%) Query: 1 MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53 AK +KIKL S+ GTG FY T KN R K+ KYDPV+RKHV KE K Sbjct: 1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53 >gnl|CDD|162161 TIGR01023, rpmG_bact, ribosomal protein L33, bacterial type. This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. Length = 54 Score = 51.3 bits (123), Expect = 6e-08 Identities = 24/52 (46%), Positives = 28/52 (53%) Query: 2 AKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53 K A I+L+ +A TG Y T KN R K+ KY PV RKHV KE K Sbjct: 3 KKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54 >gnl|CDD|179049 PRK00504, rpmG, 50S ribosomal protein L33; Validated. Length = 50 Score = 26.0 bits (58), Expect = 2.2 Identities = 11/33 (33%), Positives = 15/33 (45%) Query: 21 YVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53 Y T KN + ++ K+ P KH KE K Sbjct: 18 YTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.314 0.127 0.338 Gapped Lambda K H 0.267 0.0662 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 796,005 Number of extensions: 32812 Number of successful extensions: 48 Number of sequences better than 10.0: 1 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 5 Length of query: 55 Length of database: 5,994,473 Length adjustment: 27 Effective length of query: 28 Effective length of database: 5,411,057 Effective search space: 151509596 Effective search space used: 151509596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.2 bits)