RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780475|ref|YP_003064888.1| 50S ribosomal protein L33
[Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>gnl|CDD|179075 PRK00595, rpmG, 50S ribosomal protein L33; Validated.
          Length = 53

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query: 1  MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
           AK   +KIKL S+ GTG FY T KN R    K+   KYDPV+RKHV  KE K
Sbjct: 1  AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53


>gnl|CDD|162161 TIGR01023, rpmG_bact, ribosomal protein L33, bacterial type.
          This model describes bacterial ribosomal protein L33
          and its chloroplast and mitochondrial equivalents.
          Length = 54

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 24/52 (46%), Positives = 28/52 (53%)

Query: 2  AKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
           K A   I+L+ +A TG  Y T KN R    K+   KY PV RKHV  KE K
Sbjct: 3  KKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54


>gnl|CDD|179049 PRK00504, rpmG, 50S ribosomal protein L33; Validated.
          Length = 50

 Score = 26.0 bits (58), Expect = 2.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 21 YVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
          Y T KN +    ++   K+ P   KH   KE K
Sbjct: 18 YTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.314    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 796,005
Number of extensions: 32812
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 5
Length of query: 55
Length of database: 5,994,473
Length adjustment: 27
Effective length of query: 28
Effective length of database: 5,411,057
Effective search space: 151509596
Effective search space used: 151509596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)