RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780475|ref|YP_003064888.1| 50S ribosomal protein L33
[Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY
          structure, peptidyl-transferase, peptide bond
          formation; 3.10A {Deinococcus radiodurans} (1:)
          Length = 82

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 2  AKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI 54
               I +K+ SSAGTG +Y T KN R    K+   KYDPV +KHV F+E K+
Sbjct: 30 KDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKKV 82


>3i1n_1 50S ribosomal protein L33; ribosome structure, protein-RNA
          complex, acetylation, ribonucleoprotein, ribosomal
          protein, RNA-binding, rRNA- binding, methylation; 3.19A
          {Escherichia coli k-12} PDB: 1vs8_1 1vs6_1 3i1p_1
          3i1r_1 3i1t_1 3i20_1 3i22_1 2qam_1* 1p85_1 1p86_1
          2awb_1 2aw4_1 2i2v_1 2j28_1 2i2t_1* 2qao_1* 2qba_1*
          2qbc_1* 2qbe_1 2qbg_1 ... (1:)
          Length = 55

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKIK 55
          MAK    KIKL+SSAGTG FY T KN RT   K+   K+DPV+R+HV +KE KIK
Sbjct: 1  MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK 55


>2j01_6 50S ribosomal protein L33; ribosome, tRNA, paromomycin,
          mRNA, translation; 2.8A {Thermus thermophilus} (6:)
          Length = 54

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 20/54 (37%), Positives = 25/54 (46%)

Query: 1  MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI 54
          MA    IK+ L  +      Y T+KN R    K+   KY P  RKH   +E KI
Sbjct: 1  MASEVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHREVKI 54


>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal
          subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
          tRNA-binding, methylation; 2.91A {Deinococcus
          radiodurans} (1:)
          Length = 55

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 25/52 (48%), Positives = 32/52 (61%)

Query: 3  KAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI 54
              I +K+ SSAGTG +Y T KN R    K+   KYDPV +KHV F+E K+
Sbjct: 4  DGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKKV 55


>2ftc_P Mitochondrial ribosomal protein L33 isoform A,
          mitochondrial 39S ribosomal protein L27; mitochondrial
          ribosome, large ribosomal subunit, ribosomal RNA;
          12.10A {Bos taurus} PDB: 3iy9_P (P:)
          Length = 52

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 2  AKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
          +K+  I ++++S AGTG  + TK+N      K+    YDPV+++ V F E K
Sbjct: 3  SKSKNILVRMVSEAGTGFCFNTKRNRLR--EKLTLLHYDPVVKQRVLFVEKK 52


>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach
          chloroplast ribosome, ribonucleoprotein particle,
          macromolecular complex; 9.40A {Spinacea oleracea} (3:)
          Length = 66

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 2  AKAATIKIKLISS----------AGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKE 51
           K   +K+ L  +          +   S Y+T+KN      ++   K+ P   KH    E
Sbjct: 4  GKDVRVKVILECTGCVRKSVNKGSRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63

Query: 52 GK 53
           K
Sbjct: 64 IK 65


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 374,767
Number of extensions: 11637
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 10
Length of query: 55
Length of database: 4,956,049
Length adjustment: 25
Effective length of query: 30
Effective length of database: 4,110,924
Effective search space: 123327720
Effective search space used: 123327720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.0 bits)