RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780475|ref|YP_003064888.1| 50S ribosomal protein L33 [Candidatus Liberibacter asiaticus str. psy62] (55 letters) >gi|152994664|ref|YP_001339499.1|(2-54:56) ribosomal protein L33 [Marinomonas sp. MWYL1] gi|189042692|sp|A6VSY5.1|RL33_MARMS RecName: Full=50S ribosomal protein L33 gi|150835588|gb|ABR69564.1| ribosomal protein L33 [Marinomonas sp. MWYL1] gi|87120855|ref|ZP_01076747.1| RpmG protein [Marinomonas sp. MED121] gi|86163693|gb|EAQ64966.1| RpmG protein [Marinomonas sp. MED121] gi|92115086|ref|YP_575014.1| 50S ribosomal protein L33P [Chromohalobacter salexigens DSM 3043] gi|122419200|sp|Q1QT93.1|RL33_CHRSD RecName: Full=50S ribosomal protein L33 gi|91798176|gb|ABE60315.1| LSU ribosomal protein L33P [Chromohalobacter salexigens DSM 3043] E=1e-10 s/c=1.31 id=57% cov=102% Length = 53 Score = 64.2 bits (157), Expect = 3e-12 Identities = 27/51 (52%), Positives = 34/51 (66%) Query: 3 KAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53 K A I+++SSAGTG FY T KN R K+ K+DPV+RKHV +KE K Sbjct: 3 KGARDLIRMVSSAGTGHFYTTDKNKRNTPDKLEMKKFDPVVRKHVMYKEAK 53 >d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]} Length = 52 Score = 64.2 bits (157), Expect = 3e-12 Identities = 30/52 (57%), Positives = 36/52 (69%) Query: 2 AKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53 AK KIKL+SSAGTG FY T KN RT K+ K+DPV+R+HV +KE K Sbjct: 1 AKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 52 >d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus thermophilus [TaxId: 274]} Length = 45 Score = 37.3 bits (87), Expect = 3e-04 Identities = 14/33 (42%), Positives = 17/33 (51%) Query: 21 YVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53 Y T+KN R K+ KY P RKH +E K Sbjct: 13 YATEKNKRNTPNKLELRKYCPWCRKHTVHREVK 45 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.127 0.338 Gapped Lambda K H 0.267 0.0742 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 190,371 Number of extensions: 6261 Number of successful extensions: 10 Number of sequences better than 10.0: 1 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 4 Length of query: 55 Length of database: 2,407,596 Length adjustment: 26 Effective length of query: 29 Effective length of database: 2,050,616 Effective search space: 59467864 Effective search space used: 59467864 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 47 (21.9 bits)