RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780475|ref|YP_003064888.1| 50S ribosomal protein L33
[Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>gi|152994664|ref|YP_001339499.1|(2-54:56) ribosomal protein L33
          [Marinomonas sp. MWYL1] 
          gi|189042692|sp|A6VSY5.1|RL33_MARMS RecName: Full=50S
          ribosomal protein L33   gi|150835588|gb|ABR69564.1|
          ribosomal protein L33 [Marinomonas sp. MWYL1] 
          gi|87120855|ref|ZP_01076747.1| RpmG protein
          [Marinomonas sp. MED121]   gi|86163693|gb|EAQ64966.1|
          RpmG protein [Marinomonas sp. MED121] 
          gi|92115086|ref|YP_575014.1| 50S ribosomal protein L33P
          [Chromohalobacter salexigens DSM 3043] 
          gi|122419200|sp|Q1QT93.1|RL33_CHRSD RecName: Full=50S
          ribosomal protein L33   gi|91798176|gb|ABE60315.1| LSU
          ribosomal protein L33P [Chromohalobacter salexigens DSM
          3043]  E=1e-10 s/c=1.31 id=57% cov=102%
          Length = 53

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query: 3  KAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
          K A   I+++SSAGTG FY T KN R    K+   K+DPV+RKHV +KE K
Sbjct: 3  KGARDLIRMVSSAGTGHFYTTDKNKRNTPDKLEMKKFDPVVRKHVMYKEAK 53


>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia
          coli [TaxId: 562]}
          Length = 52

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 30/52 (57%), Positives = 36/52 (69%)

Query: 2  AKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
          AK    KIKL+SSAGTG FY T KN RT   K+   K+DPV+R+HV +KE K
Sbjct: 1  AKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 52


>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus
          thermophilus [TaxId: 274]}
          Length = 45

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 21 YVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
          Y T+KN R    K+   KY P  RKH   +E K
Sbjct: 13 YATEKNKRNTPNKLELRKYCPWCRKHTVHREVK 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 190,371
Number of extensions: 6261
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 4
Length of query: 55
Length of database: 2,407,596
Length adjustment: 26
Effective length of query: 29
Effective length of database: 2,050,616
Effective search space: 59467864
Effective search space used: 59467864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (21.9 bits)