HHsearch alignment for GI: 254780476 and conserved domain: COG3707

>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms].
Probab=99.61  E-value=1.1e-14  Score=105.22  Aligned_cols=116  Identities=28%  Similarity=0.456  Sum_probs=100.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             987789953998999999999997898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
T Consensus         4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd--~~e~-~~~~~~~~~~pi   80 (194)
T COG3707           4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRD--IIEA-LLLASENVARPI   80 (194)
T ss_pred             CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCC--HHHH-HHHHHCCCCCCE
T ss_conf             6653034241135556789899875973876541344750677852998799966787732--8999-898605899878


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             9999249989999999769988998798989999999997
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY  119 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~  119 (123)
T Consensus        81 v~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA  120 (194)
T COG3707          81 VALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVA  120 (194)
T ss_pred             EEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             9997167858999999738749883476542104799999