HHsearch alignment for GI: 254780476 and conserved domain: COG3947

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].

Probab=99.80  E-value=4.5e-19  Score=130.35  Aligned_cols=114  Identities=24%  Similarity=0.457  Sum_probs=103.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
T Consensus         1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~--~~v~iifI   78 (361)
T COG3947           1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPIIFI   78 (361)
T ss_pred             CCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHH--CCCCEEEE
T ss_conf             9279984638999999999986110210068878899999843887799985237860878999998753--14868999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             92499899999997699889987989899999999974
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
T Consensus        79 ssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~  114 (361)
T COG3947          79 SSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRL  114 (361)
T ss_pred             ECCHHHHH--HHCCCCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             63056523--2035566754168888889999999874