HHsearch alignment for GI: 254780476 and conserved domain: COG4566
>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.86 E-value=5.8e-21 Score=141.19 Aligned_cols=119 Identities=22% Similarity=0.374 Sum_probs=111.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~--~~~PVIf 81 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPVIF 81 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEE
T ss_conf 87689976848899999999983895366504799998306678897699855788885089999999539--9988799
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 82788728999999742156774788548999999999998