HHsearch alignment for GI: 254780476 and conserved domain: COG4566

>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.86  E-value=5.8e-21  Score=141.19  Aligned_cols=119  Identities=22%  Similarity=0.374  Sum_probs=111.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
T Consensus         4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~--~~~PVIf   81 (202)
T COG4566           4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPVIF   81 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEE
T ss_conf             87689976848899999999983895366504799998306678897699855788885089999999539--9988799


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
T Consensus        82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~  122 (202)
T COG4566          82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR  122 (202)
T ss_pred             EECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             82788728999999742156774788548999999999998