HHsearch alignment for GI: 254780476 and conserved domain: PRK09836
>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=99.97 E-value=3.8e-29 Score=188.16 Aligned_cols=117 Identities=21% Similarity=0.464 Sum_probs=112.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~--~~~PII~Lt 79 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILLLT 79 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHC--CCCEEEEEE
T ss_conf 899993999999999999987899999989999999998518999999889999998720435677616--796099994
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
T Consensus 80 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr 118 (226)
T PRK09836 80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (226)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 458988999999769968863687679999999999662