HHsearch alignment for GI: 254780476 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.67  E-value=2e-15  Score=109.38  Aligned_cols=116  Identities=8%  Similarity=0.020  Sum_probs=101.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
T Consensus        10 g~~vlL~~dp~l~~~~~a~~l~e~l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~-~~p~~kVli   86 (216)
T PRK10100         10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSR-KNNNIKILL   86 (216)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCEEEE
T ss_conf             83899955842999999998898764763024776677644--799989984887883089999999972-599977999


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             992499899999997699889987989899999999974
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
T Consensus        87 LTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~  125 (216)
T PRK10100         87 LNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVL  125 (216)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             968874899999976587667668999999999999998