HHsearch alignment for GI: 254780476 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.67 E-value=2e-15 Score=109.38 Aligned_cols=116 Identities=8% Similarity=0.020 Sum_probs=101.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
T Consensus 10 g~~vlL~~dp~l~~~~~a~~l~e~l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~-~~p~~kVli 86 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSR-KNNNIKILL 86 (216)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCEEEE
T ss_conf 83899955842999999998898764763024776677644--799989984887883089999999972-599977999
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 992499899999997699889987989899999999974
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
T Consensus 87 LTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~ 125 (216)
T PRK10100 87 LNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVL 125 (216)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 968874899999976587667668999999999999998