HHsearch alignment for GI: 254780476 and conserved domain: PRK10360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.86 E-value=3.1e-20 Score=136.98 Aligned_cols=115 Identities=21% Similarity=0.299 Sum_probs=106.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 87789953998999999999997-898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
T Consensus 1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~-----~~~v 75 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK-----GMAT 75 (196)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC-----CCCE
T ss_conf 91999987979999999999812999599999899999999887449999998788788620779999843-----8748
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
T Consensus 76 ivls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~ 117 (196)
T PRK10360 76 IMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 999730759999999975998899778999999999999986