HHsearch alignment for GI: 254780476 and conserved domain: PRK10430
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=99.94 E-value=4.2e-26 Score=170.72 Aligned_cols=118 Identities=23% Similarity=0.350 Sum_probs=108.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 87789953998999999999997-898999-988979999999--82799899995041296959999999828576899
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELA--RQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l--~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i 77 (123)
T Consensus 1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~--~~~ 78 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKS 78 (239)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCC
T ss_conf 987999929899999999998518990899998999999999965799985899789999997899999999858--998
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 59999924998999999976998899879898999999999740
Q gi|254780476|r 78 PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 78 pii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
T Consensus 79 ~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~ 122 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf 19999726889999999983950304899999999999999999