HHsearch alignment for GI: 254780476 and conserved domain: PRK10430

>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=99.94  E-value=4.2e-26  Score=170.72  Aligned_cols=118  Identities=23%  Similarity=0.350  Sum_probs=108.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             87789953998999999999997-898999-988979999999--82799899995041296959999999828576899
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELA--RQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l--~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i   77 (123)
T Consensus         1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~--~~~   78 (239)
T PRK10430          1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKS   78 (239)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCC
T ss_conf             987999929899999999998518990899998999999999965799985899789999997899999999858--998


Q ss_pred             CEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             59999924998999999976998899879898999999999740
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
T Consensus        79 ~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~  122 (239)
T PRK10430         79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ  122 (239)
T ss_pred             EEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf             19999726889999999983950304899999999999999999