HHsearch alignment for GI: 254780476 and conserved domain: PRK10816
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=99.95 E-value=2.9e-27 Score=177.39 Aligned_cols=117 Identities=22% Similarity=0.429 Sum_probs=112.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~--~~~piI~lt 79 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLT 79 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCC--CCCCEEEEE
T ss_conf 899995989999999999997899999989999999999757998999979998988640012011048--987689994
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
T Consensus 80 a~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr 118 (223)
T PRK10816 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 445677899999869988641897778999999999665