HHsearch alignment for GI: 254780476 and conserved domain: PRK10840

>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.83  E-value=3.7e-19  Score=130.83  Aligned_cols=117  Identities=14%  Similarity=0.148  Sum_probs=107.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC---CCHHHHHHHHHHCCCCCCC
Q ss_conf             77899539989999999999978-98999-9889799999998279989999504129---6959999999828576899
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQE---ISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~---~dG~el~~~ir~~~~~~~i   77 (123)
T Consensus         4 irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~--~p~~   81 (216)
T PRK10840          4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRH--FPSL   81 (216)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf             88999889799999999998159996899987999999999862398989982677999887899999999985--8998


Q ss_pred             CEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             59999924998999999976998899879898999999999740
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
T Consensus        82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~  125 (216)
T PRK10840         82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK  125 (216)
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             08998477878999999858974899878999999999999987