HHsearch alignment for GI: 254780476 and conserved domain: PRK11107
>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=99.28 E-value=1.1e-10 Score=82.08 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=95.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
T Consensus 536 g~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~~~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~il 611 (920)
T PRK11107 536 GKRLLYVEPNSLAAQATLDLLSETPLEVTYSPTLSQL----PEAHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDFLIL 611 (920)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHH----HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 8769997697789999999999749645751788775----136888799616666654066789998630035784699
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 992499899999997699889987989899999999
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
T Consensus 612 ~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~ 647 (920)
T PRK11107 612 ALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALL 647 (920)
T ss_pred EECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHH
T ss_conf 715643455788764253021127776889999872