HHsearch alignment for GI: 254780476 and conserved domain: PRK11517
>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=99.96 E-value=8.1e-29 Score=186.30 Aligned_cols=116 Identities=26% Similarity=0.467 Sum_probs=111.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~---~~~pII~lt 78 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLT 78 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC---CCCCEEEEE
T ss_conf 89999698999999999999889999998999999999852899999984999873689999999856---886489995
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 655657899999839877620897789999999999641