HHsearch alignment for GI: 254780476 and conserved domain: PRK11517

>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=99.96  E-value=8.1e-29  Score=186.30  Aligned_cols=116  Identities=26%  Similarity=0.467  Sum_probs=111.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
T Consensus         2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~---~~~pII~lt   78 (223)
T PRK11517          2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLT   78 (223)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC---CCCCEEEEE
T ss_conf             89999698999999999999889999998999999999852899999984999873689999999856---886489995


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             249989999999769988998798989999999997403
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
T Consensus        79 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr  117 (223)
T PRK11517         79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ  117 (223)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             655657899999839877620897789999999999641