HHsearch alignment for GI: 254780476 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.62  E-value=1.2e-15  Score=110.62  Aligned_cols=114  Identities=14%  Similarity=0.141  Sum_probs=99.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
T Consensus        19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe--~~p~lP~Il~t   96 (674)
T PRK13558         19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQ--THAEFPVVVVP   96 (674)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHH--CCCCCCEEEEE
T ss_conf             9999468887775234566677421276323888986531589876996565788867999999861--38999889995


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             24998999999976998899879898999999999740
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
T Consensus        97 ~~gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~  132 (674)
T PRK13558         97 TAVDEDVARRAVDADATGLVPA--VSEDATAAIADRIE  132 (674)
T ss_pred             CCCCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf             6785899999875163643344--71768999999999