HHsearch alignment for GI: 254780476 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.94  E-value=4.1e-26  Score=170.77  Aligned_cols=117  Identities=25%  Similarity=0.443  Sum_probs=113.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC------
Q ss_conf             78995399899999999999789899998897999999982-79989999504129695999999982857689------
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQE------   76 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~------   76 (123)
T Consensus       763 ~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p  842 (1052)
T TIGR02956       763 RVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEP  842 (1052)
T ss_pred             EEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             13246447477999999984279447208549999999854887675455157889865678999999997320444567


Q ss_pred             CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             95999992499899999997699889987989899999999974
Q gi|254780476|r   77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        77 ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
T Consensus       843 ~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l  886 (1052)
T TIGR02956       843 VKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL  886 (1052)
T ss_pred             CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             77222113344776999975302663479987788999999987