HHsearch alignment for GI: 254780476 and conserved domain: cd00156
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers.
Probab=99.96 E-value=2.7e-28 Score=183.32 Aligned_cols=113 Identities=34% Similarity=0.626 Sum_probs=109.1
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 99539989999999999978989999889799999998279989999504129695999999982857689959999924
Q gi|254780476|r 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 6 LiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~--~~~~pvI~lT~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLTAH 78 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH--CCCCCEEEEECC
T ss_conf 989272999999999999889999998999999999875799999977999898726999999985--899959999787
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 99899999997699889987989899999999974
Q gi|254780476|r 86 AMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 86 ~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
T Consensus 79 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 89999999997689789969899999999999869