HHsearch alignment for GI: 254780476 and conserved domain: cd02068
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.87 E-value=1.4 Score=24.09 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECC--HHHHH-HHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 9999999999978989999889--79999-999827998999950412969-5999999982857689959999924998
Q gi|254780476|r 13 LNMKLFRDLIETSGYIALQTRN--GMEAL-ELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMK 88 (123)
Q Consensus 13 ~~~~~l~~~l~~~g~~v~~a~~--g~eal-~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~ 88 (123)
T Consensus 3 LGl~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~~--p~~~iv~-GG~h~t 79 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVV-GGPHAT 79 (127)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHC--CCCEEEE-CCCCCC
T ss_conf 7999999999978995799857876203999986499699999976889999999999999978--9978998-598745
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 999999976998899879898999999999
Q gi|254780476|r 89 GDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 89 ~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
T Consensus 80 ~~p~~~l~~~~~D~vv~GEGE~t~~~ll~~ 109 (127)
T cd02068 80 FFPEEILEEPGVDFVVIGEGEETFLKLLEE 109 (127)
T ss_pred CCHHHHHHCCCCCEEEECCHHHHHHHHHHH
T ss_conf 499999707587789968689999999999