HHsearch alignment for GI: 254780477 and conserved domain: TIGR02738
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; InterPro: IPR014109 This entry includes thiol-disulphide isomerase (TrbB), a protein that is involved in conjugative transfer of plasmid DNA, specifically in the F-type system. TrbB has been predicted to contain a thioredoxin fold, it also contains a conserved pair of cysteines and has been shown to function as a thiol disulphide isomerase by complementation of Escherichia coli DsbA mutants . TtbB is believed to be involved in pilin assembly . TrbB is closely related to TraF (IPR014110 from INTERPRO) though somewhat longer lacking the cysteine motif and is apparently not functional as a disulphide bond isomerase..
Probab=91.86 E-value=0.093 Score=31.12 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=21.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8899997058882064433421134432
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
T Consensus 72 ~~~~vfF~~S~CPyCh~FAP~LK~f~~~ 99 (176)
T TIGR02738 72 DYALVFFYQSTCPYCHQFAPVLKRFSQQ 99 (176)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 3507888628896400226577878876