HHsearch alignment for GI: 254780477 and conserved domain: cd03003
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=93.48 E-value=0.1 Score=30.93 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=24.8
Q ss_pred HHHHCCCCCCCEEEE--CCE---EECCCCCHHHHHHH
Q ss_conf 998618853657998--989---96189999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGN---LYLGDMSEGVFSKI 221 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~---~~~g~~~~~~~~~~ 221 (232)
T Consensus 64 lc~~~~V~~yPTl~~f~~G~~~~~Y~G~Rt~~~l~~F 100 (101)
T cd03003 64 LCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred HHCCCEEEECCEEEEECCCCEEEEEECCCCHHHHHHH
T ss_conf 4013456762489998099701455088999999955