HHsearch alignment for GI: 254780477 and conserved domain: cd03020
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=99.59 E-value=6e-15 Score=114.48 Aligned_cols=129 Identities=11% Similarity=0.210 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78411689888899997058882064433421134432000020379984332343024577766666666532124558
Q gi|254780477|r 56 KDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGF 135 (232)
Q Consensus 56 ~~~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (232)
T Consensus 68 ~~I~~~~~~~~~~i~vFtDp~CpyC~kl~~~l~~-~~~------~i~v~~~~~P~~g~~~s~~~~~~i~Ca~d~~~a~~~ 140 (197)
T cd03020 68 DAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-NAD------GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTD 140 (197)
T ss_pred CCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHH-HCC------CEEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 3768548998879999979898789999999885-458------849999982157785169999999806899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE-CCEEECCCCC
Q ss_conf 888886543321134568998764311000068898640598999999999999998618853657998-9899618999
Q gi|254780477|r 136 VSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI-GGNLYLGDMS 214 (232)
Q Consensus 136 ~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V-nG~~~~g~~~ 214 (232)
T Consensus 141 ---~~~~---------------------~~~~~~~~~c~------~~v~~~~-~l~~~lGi~GTPtiv~~dG~~v~G~~~ 189 (197)
T cd03020 141 ---AMSG---------------------GKVPPPAASCD------NPVAANL-ALGRQLGVNGTPTIVLADGRVVPGAPP 189 (197)
T ss_pred ---HHHC---------------------CCCCCCCCCCC------CHHHHHH-HHHHHHCCCCCCEEEECCCCCCCCCCC
T ss_conf ---9857---------------------99889644346------4999999-999982998477799689979779899
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780477|r 215 EGVFSKII 222 (232)
Q Consensus 215 ~~~~~~~i 222 (232)
T Consensus 190 ~~~L~~~L 197 (197)
T cd03020 190 AAQLEALL 197 (197)
T ss_pred HHHHHHHC
T ss_conf 99999439