HHsearch alignment for GI: 254780477 and conserved domain: cd03023

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.97  E-value=1.9e-30  Score=212.45  Aligned_cols=153  Identities=26%  Similarity=0.452  Sum_probs=129.2

Q ss_pred             CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6898888999970588820644334211344320000203799843323430245-777666666665321245588888
Q gi|254780477|r   61 GQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST-VAVMLARCAEKRMDGGYWGFVSLL  139 (232)
Q Consensus        61 G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~  139 (232)
T Consensus         1 G~~~A~v~ivef~d~~Cp~C~~~~~~l~~~~~~~----~~v~~~~~~~P~~~~~~~~aa~~~~~~~~~~~~~f~~~~~~l   76 (154)
T cd03023           1 GNPNGDVTIVEFFDYNCGYCKKLAPELEKLLKED----PDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNAL   76 (154)
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             9999999999988999863788889999999858----870488550642564639999999999986812599999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCHHHHH
Q ss_conf             86543321134568998764311000068898640598999999999999998618853657998989961899999999
Q gi|254780477|r  140 FNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFS  219 (232)
Q Consensus       140 ~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~~  219 (232)
T Consensus        77 ~~~~~~-----~~~~~l~~~a~~~gld~~~f~~~~~s~~~~~~v~~~~~~a-~~~gI~gTPt~~Ing~~~~G~~~~~~l~  150 (154)
T cd03023          77 MATRGR-----LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLA-RALGITGTPAFIIGDTVIPGAVPADTLK  150 (154)
T ss_pred             HHHCCC-----CHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCCCCEEEECCEEECCCCCHHHHH
T ss_conf             983642-----0389999999983998899998865888999999989999-9859978998989999943889999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780477|r  220 KIID  223 (232)
Q Consensus       220 ~~id  223 (232)
T Consensus       151 ~~ie  154 (154)
T cd03023         151 EAID  154 (154)
T ss_pred             HHHC
T ss_conf             9759