HHsearch alignment for GI: 254780477 and conserved domain: cd03023
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.97 E-value=1.9e-30 Score=212.45 Aligned_cols=153 Identities=26% Similarity=0.452 Sum_probs=129.2
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6898888999970588820644334211344320000203799843323430245-777666666665321245588888
Q gi|254780477|r 61 GQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST-VAVMLARCAEKRMDGGYWGFVSLL 139 (232)
Q Consensus 61 G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 139 (232)
T Consensus 1 G~~~A~v~ivef~d~~Cp~C~~~~~~l~~~~~~~----~~v~~~~~~~P~~~~~~~~aa~~~~~~~~~~~~~f~~~~~~l 76 (154)
T cd03023 1 GNPNGDVTIVEFFDYNCGYCKKLAPELEKLLKED----PDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNAL 76 (154)
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 9999999999988999863788889999999858----870488550642564639999999999986812599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCHHHHH
Q ss_conf 86543321134568998764311000068898640598999999999999998618853657998989961899999999
Q gi|254780477|r 140 FNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFS 219 (232)
Q Consensus 140 ~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~~ 219 (232)
T Consensus 77 ~~~~~~-----~~~~~l~~~a~~~gld~~~f~~~~~s~~~~~~v~~~~~~a-~~~gI~gTPt~~Ing~~~~G~~~~~~l~ 150 (154)
T cd03023 77 MATRGR-----LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLA-RALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHCCC-----CHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCCCCEEEECCEEECCCCCHHHHH
T ss_conf 983642-----0389999999983998899998865888999999989999-9859978998989999943889999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780477|r 220 KIID 223 (232)
Q Consensus 220 ~~id 223 (232)
T Consensus 151 ~~ie 154 (154)
T cd03023 151 EAID 154 (154)
T ss_pred HHHC
T ss_conf 9759