HHsearch results for GI: 254780477 and protein with PDBid: 1nsw_A
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=97.83 E-value=2.3e-05 Score=52.52 Aligned_cols=83 Identities=14% Similarity=0.292 Sum_probs=56.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999970588820644334211344320000203799843323430245777666666665321245588888865433
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDD 145 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~ 145 (232)
+.+++.|....||+|+.+.+.+.+..+++ .+. +.++....
T Consensus 18 k~vvv~F~a~wC~~C~~~~~~~~~~~~~~-~~~--v~f~~vd~------------------------------------- 57 (105)
T 1nsw_A 18 GPVLVDFWAAWCGPCRMMAPVLEEFAEAH-ADK--VTVAKLNV------------------------------------- 57 (105)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHHHHS-TTT--CEEEEEET-------------------------------------
T ss_pred CCEEEEEECCCCCCHHCCCCCHHHHHHHC-CCC--EEEEEEEC-------------------------------------
T ss_conf 98999998999822232284079998754-896--69999999-------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHH
Q ss_conf 21134568998764311000068898640598999999999999998618853657998--9899---618999999999
Q gi|254780477|r 146 WINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSK 220 (232)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~ 220 (232)
+ .. ...++++||.|+||+++ ||+. +.|..+.+++++
T Consensus 58 --------------------d--------~~-----------~~~~~~~~V~~~Pt~~~f~~G~~v~~~~G~~~~~~l~~ 98 (105)
T 1nsw_A 58 --------------------D--------EN-----------PETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEA 98 (105)
T ss_dssp --------------------T--------TC-----------HHHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHH
T ss_pred --------------------C--------CC-----------HHHHHHCCCCCCCEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf --------------------8--------78-----------64698678310638999989979889978899999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780477|r 221 IIDSMIQ 227 (232)
Q Consensus 221 ~id~ll~ 227 (232)
.|+++|+
T Consensus 99 ~i~~~L~ 105 (105)
T 1nsw_A 99 QLADVLQ 105 (105)
T ss_dssp HTTTTTC
T ss_pred HHHHHHC
T ss_conf 9999749