HHsearch results for GI: 254780477 and protein with PDBid: 3gyk_A
>3gyk_A 27KDA outer membrane protein; APC61738.2, thioredoxin-like, oxidoreductase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.76A {Silicibacter pomeroyi dss-3}
Probab=99.96 E-value=1.3e-28 Score=199.45 Aligned_cols=164 Identities=16% Similarity=0.300 Sum_probs=136.0
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67841168988889999705888206443342113443200002037998433234302457776666666653212455
Q gi|254780477|r 55 MKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWG 134 (232)
Q Consensus 55 ~~~~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (232)
...+++|+++||++|+||+||.||||+++++.+.+.+++. +++.++++++|........ +.....+...+..++.
T Consensus 12 ~~~p~~G~~~A~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~----~~v~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~ 86 (175)
T 3gyk_A 12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDAD----PNVRLVYREWPILGEGSDF-AARAALAARQQGKYEA 86 (175)
T ss_dssp TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHC----TTEEEEEEECCCSCHHHHH-HHHHHHHGGGGTCHHH
T ss_pred CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC----CCEEEEEEECCCCCHHHHH-HHHHHHHHHHCCCHHH
T ss_conf 9998547999998999988999864798999999988655----9769999736432121399-9999998740320367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCC
Q ss_conf 88888865433211345689987643110000688986405989999999999999986188536579989899618999
Q gi|254780477|r 135 FVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMS 214 (232)
Q Consensus 135 ~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~~~ 214 (232)
+++.++..+.. .+.+.+..+....+++..++..|+++......|..+.+.+ +.+||+|||||||||+++.|..+
T Consensus 87 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~a-~~~gi~gTPt~~VnG~~v~g~~~ 160 (175)
T 3gyk_A 87 FHWALMGMSGK-----ANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALA-QKLGFNGTPSFVVEDALVPGFVE 160 (175)
T ss_dssp HHHHHHTCSSC-----CSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHH-HHHTCCSSSEEEETTEEECSCCC
T ss_pred HHHHHHHHCCC-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCEEEECCEEECCCCC
T ss_conf 99999852021-----0256799999984999999999863488999999999999-98598328889999999429999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999986
Q gi|254780477|r 215 EGVFSKIIDSMIQDS 229 (232)
Q Consensus 215 ~~~~~~~id~ll~~~ 229 (232)
+++|+++||+.++++
T Consensus 161 ~~~l~~~I~~~~~~~ 175 (175)
T 3gyk_A 161 QSQLQDAVDRARKAA 175 (175)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998439