HHsearch results for GI: 254780477 and protein with PDBid: 3hd5_A
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=99.97 E-value=3.6e-29 Score=203.04 Aligned_cols=171 Identities=15% Similarity=0.179 Sum_probs=132.6
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66784116898888999970588820644334211344320000203799843323430245777666666665321245
Q gi|254780477|r 54 TMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYW 133 (232)
Q Consensus 54 ~~~~~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 133 (232)
..+.++.|+++|||+|+||+||.||||+.|++.+.+++++...+ +.++..+++.+......++...+ .....++
T Consensus 14 ~l~~P~~~~~~akvtIvef~dy~Cp~C~~~e~~l~~~~~~~~~~---v~~~~~p~~~~~~~~~~a~~~~a---~~~~~~~ 87 (195)
T 3hd5_A 14 NINPPMPSDTPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD---VVLKQVPIAFNAGMKPLQQLYYT---LQALERP 87 (195)
T ss_dssp ECSSCCCCSSTTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECCSSGGGHHHHHHHHH---HHHTTCT
T ss_pred ECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC---EEEEEEECCCCHHHHHHHHHHHH---HHHCHHH
T ss_conf 87899878999976999988889863798979999999737787---58999743540549999999999---9964157
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCC-
Q ss_conf 5888888654332113456899876431100006889864059899999999999999861885365799898996189-
Q gi|254780477|r 134 GFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGD- 212 (232)
Q Consensus 134 ~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~- 212 (232)
.++..+|.............+.+..++...|++..++..|+++......|.++...+ +++||+|||||+|||+++.+.
T Consensus 88 ~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~gid~~~~~~~~~s~~~~~~v~~~~~~~-~~~gi~gTPtfiVnGky~~~~~ 166 (195)
T 3hd5_A 88 DLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLA-EAAHIDGTPAFAVGGRYMTSPV 166 (195)
T ss_dssp THHHHHHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHH-HHTTCCSSSEEEETTTEEECTT
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH-HHHCCCCCCEEEECCEEECCCC
T ss_conf 889999999998523634299999999981999999999972966789999999999-9809843478999999963755
Q ss_pred ---CCHHHHHHHHHHHHHHHHC
Q ss_conf ---9999999999999998603
Q gi|254780477|r 213 ---MSEGVFSKIIDSMIQDSTR 231 (232)
Q Consensus 213 ---~~~~~~~~~id~ll~~~~~ 231 (232)
.+++++.++||+||+|+||
T Consensus 167 ~~~~~~~~~~~~id~ll~k~~~ 188 (195)
T 3hd5_A 167 LAGNDYAGALKVVDQLIVQSRE 188 (195)
T ss_dssp TTTGGGTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHC
T ss_conf 6764799999999999999967