RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] (232 letters) >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated. Length = 523 Score = 29.5 bits (67), Expect = 0.79 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%) Query: 45 RALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHN 85 RAL+A S + + D P+ ++ +HCA+ Sbjct: 194 RALIAEYVSCIVAGDMSADDIPL-----HALPLYHCAQLDV 229 >gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional. Length = 427 Score = 26.6 bits (59), Expect = 5.6 Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 202 FFIGGNLYLGDMSEGVFSKI 221 FIG L D S+ VF+ I Sbjct: 244 LFIGLRWRLADRSDPVFAAI 263 >gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional. Length = 936 Score = 26.7 bits (59), Expect = 5.7 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 40 GVVDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTC 77 G+ D AL A P+ +K + + +A +++ A C Sbjct: 764 GINDIAALARADPADLKKAGLSEAEA-ASLLAEAKSLC 800 >gnl|CDD|129981 TIGR00903, 2A0129, major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. Length = 368 Score = 26.1 bits (57), Expect = 7.5 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 1 MVMSTTRIGVLGGIVLLFIASYFFYTRKGSALNELPIP----DGVVDFRALLAASPSTMK 56 +V+S + GI+ A YT G L +PI G++ A L A P Sbjct: 114 LVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQ-A 172 Query: 57 DVSIGQKDA 65 G KDA Sbjct: 173 AEGFGFKDA 181 >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional. Length = 396 Score = 25.8 bits (57), Expect = 8.5 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%) Query: 163 AGFSKNDFDTCLNDQNIL---DDIKAGKKRASEDFAID---STPVFFIGGNLYLGDMSEG 216 GF K + C ++N+L D+I+ G R + FA D TP +I G G G Sbjct: 206 EGFLKAARELC-KEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGG----G 260 Query: 217 VF 218 VF Sbjct: 261 VF 262 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.138 0.410 Gapped Lambda K H 0.267 0.0644 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,760,857 Number of extensions: 232432 Number of successful extensions: 515 Number of sequences better than 10.0: 1 Number of HSP's gapped: 515 Number of HSP's successfully gapped: 15 Length of query: 232 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 142 Effective length of database: 4,049,753 Effective search space: 575064926 Effective search space used: 575064926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.1 bits)