RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase
[Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)



>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
          Length = 523

 Score = 29.5 bits (67), Expect = 0.79
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)

Query: 45  RALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHN 85
           RAL+A   S +    +   D P+      ++  +HCA+   
Sbjct: 194 RALIAEYVSCIVAGDMSADDIPL-----HALPLYHCAQLDV 229


>gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional.
          Length = 427

 Score = 26.6 bits (59), Expect = 5.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 202 FFIGGNLYLGDMSEGVFSKI 221
            FIG    L D S+ VF+ I
Sbjct: 244 LFIGLRWRLADRSDPVFAAI 263


>gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional.
          Length = 936

 Score = 26.7 bits (59), Expect = 5.7
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 40  GVVDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTC 77
           G+ D  AL  A P+ +K   + + +A  +++  A   C
Sbjct: 764 GINDIAALARADPADLKKAGLSEAEA-ASLLAEAKSLC 800


>gnl|CDD|129981 TIGR00903, 2A0129, major facilitator 4 family protein.  This family
           of proteins are uncharacterized proteins from archaea.
           This family includes proteins from Archaeoglobus
           fulgidus and Aeropyrum pernix.
          Length = 368

 Score = 26.1 bits (57), Expect = 7.5
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 1   MVMSTTRIGVLGGIVLLFIASYFFYTRKGSALNELPIP----DGVVDFRALLAASPSTMK 56
           +V+S     +  GI+    A    YT  G  L  +PI      G++   A L A P    
Sbjct: 114 LVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQ-A 172

Query: 57  DVSIGQKDA 65
               G KDA
Sbjct: 173 AEGFGFKDA 181


>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
          Length = 396

 Score = 25.8 bits (57), Expect = 8.5
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 163 AGFSKNDFDTCLNDQNIL---DDIKAGKKRASEDFAID---STPVFFIGGNLYLGDMSEG 216
            GF K   + C  ++N+L   D+I+ G  R  + FA D    TP  +I G    G    G
Sbjct: 206 EGFLKAARELC-KEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGG----G 260

Query: 217 VF 218
           VF
Sbjct: 261 VF 262


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,760,857
Number of extensions: 232432
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 15
Length of query: 232
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,049,753
Effective search space: 575064926
Effective search space used: 575064926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)