RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase
[Candidatus Liberibacter asiaticus str. psy62]
(232 letters)
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 116 bits (290), Expect = 6e-27
Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 3/182 (1%)
Query: 48 LAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILRE 107
++ PS +G+ DAPVT+VE+ C C F++ F ++ +I G +++
Sbjct: 12 VSGQPSIKGQPVLGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVN 71
Query: 108 FPLD-SVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMA-KFAGF 165
S +A + + K +W F LF KQ D L ++A
Sbjct: 72 VMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKI 131
Query: 166 SKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSM 225
L+ + ++ + I +TP ++ + + I+
Sbjct: 132 KPETLKENLDKETFASQVEKDSDLN-QKMNIQATPTIYVNDKVIKNFADYDEIKETIEKE 190
Query: 226 IQ 227
++
Sbjct: 191 LK 192
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold,
oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis
wmel} PDB: 3f4r_A* 3f4t_A*
Length = 226
Score = 108 bits (270), Expect = 1e-24
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 42 VDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKL 101
+ LL P+ D +G AP+ M+EYAS+TC+HC+ FH F +++KYI TGK+
Sbjct: 19 ITSNELLLPLPN---DKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKM 75
Query: 102 RYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKN-YRDALLNMA 160
YI R FPLD A ML+ C EK+ D Y+ F +FN D W L +A
Sbjct: 76 LYIFRHFPLDYRGLKAAMLSHCYEKQED--YFNFNKAVFNSIDSWNYYNLSDLTLLQRIA 133
Query: 161 KFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGN-----------LY 209
+ ++ F+ C+ND+ I+D I K A I + P+FFI N +
Sbjct: 134 ALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKH 193
Query: 210 LGDMSEGVFSKIIDSMIQDSTRR 232
G F+ +ID + + +
Sbjct: 194 GGYKELKYFTNVIDKLYGKAIVK 216
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox
protein, protein folding, redox active centre; 1.81A
{Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Length = 186
Score = 105 bits (263), Expect = 6e-24
Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 5/179 (2%)
Query: 55 MKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVS 114
M + K+ +V Y C +C E K L YI K+ Y
Sbjct: 1 MASATTSSKNGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKD 60
Query: 115 TV-AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTC 173
++ + + F LF Q D ++ L K K +
Sbjct: 61 SIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKI 120
Query: 174 LNDQNILDDIKAGK----KRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQD 228
+ D D K+ ++D I +TP FI G + K++ I+
Sbjct: 121 IKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIKL 179
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
periplasm, redox-active center, transcription regulator;
HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 97.6 bits (242), Expect = 2e-21
Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 6/170 (3%)
Query: 54 TMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSV 113
+ + + +VE C HC F + E +R + +V
Sbjct: 14 ELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNV 73
Query: 114 STVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTC 173
+ G + +F + + + G K F +
Sbjct: 74 HGQMFLTLES-----MGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLST 128
Query: 174 LNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223
N I ++ KK A + + P + G S G + +
Sbjct: 129 YNSFAIKGQMEKAKKLA-MAYQVTGVPTMVVNGKYRFDIGSAGGPEETLK 177
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, PSI,
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Enterococcus
faecalis V583} SCOP: c.47.1.13
Length = 175
Score = 96.2 bits (238), Expect = 6e-21
Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 13/184 (7%)
Query: 41 VVDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGK 100
+D + A +T + IG+ +APV M+E+ ++ C +C ++ + + L + +K+GK
Sbjct: 3 AMDISVIDATKVNTETGLHIGESNAPVKMIEFINVRCPYCRKWF-EESEELLAQSVKSGK 61
Query: 101 LRYILREFPLDSVSTVAVMLARCAEKRMD-GGYWGFVSLLFNKQDDWINSKNYRDALLNM 159
+ I++ F + S + + +F QD+W N + +
Sbjct: 62 VERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLT--LEEVATY 119
Query: 160 AKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFS 219
A+ K D L I + A I P IG ++ ++E
Sbjct: 120 AEKNLGLKEQKDATLVSAVIAEANAAH---------IQFVPTIIIGEYIFDESVTEEELR 170
Query: 220 KIID 223
I+
Sbjct: 171 GYIE 174
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.76A
{Novosphingobium aromaticivorans DSM12444}
Length = 205
Score = 92.1 bits (227), Expect = 9e-20
Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 26/195 (13%)
Query: 57 DVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTV 116
+G A + +VE+ S TC HC+ F ++ L+ ++ GK +R F D +
Sbjct: 7 HHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMT 66
Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDW-----------------------INSKNYR 153
++ C ++ + Q W +
Sbjct: 67 VALITNCVPPSR---FFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASD 123
Query: 154 DALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDM 213
+ G ++ D CL+++ + + A A + + TP F I G L G
Sbjct: 124 FRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTH 183
Query: 214 SEGVFSKIIDSMIQD 228
I + + +
Sbjct: 184 DWASLRPQILARLNE 198
>3gyk_A 27KDA outer membrane protein; APC61738.2, thioredoxin-like,
oxidoreductase, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.76A {Silicibacter
pomeroyi dss-3}
Length = 175
Score = 91.8 bits (227), Expect = 1e-19
Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 11/167 (6%)
Query: 57 DVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTV 116
+G + VT+VE+ C +C ++ +R + RE+P+ +
Sbjct: 14 APVLGNPEGDVTVVEFFDYNCPYCRRAM----AEVQGLVDADPNVRLVYREWPILGEGSD 69
Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLND 176
A R G Y F L +L +A+ G +
Sbjct: 70 FAARAAL-AARQQGKYEAFHWALMGMSGKA-----NETGVLRIAREVGLDTEQLQRDMEA 123
Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223
+ I A + + TP F + L G + + +D
Sbjct: 124 PEVTAHIAQSMALA-QKLGFNGTPSFVVEDALVPGFVEQSQLQDAVD 169
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural
genomics, protein structure initiative; 2.50A
{Pseudomonas syringae PV}
Length = 182
Score = 91.2 bits (225), Expect = 2e-19
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 9/173 (5%)
Query: 59 SIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAV 118
++ P + TC + K L +R L+ P S V V
Sbjct: 8 ALSWGHGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIV 67
Query: 119 MLARCAEK--RMDGGYWGFVSLLFNKQDDWINSKN------YRDALLNMAKFAGFSKNDF 170
A ++ + + ++++ + +A+ +S
Sbjct: 68 RCILAAATLEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLAL 127
Query: 171 DTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223
+ + +K K A I +P F I G + G S SK +
Sbjct: 128 AEAFANPELEHAVKWHTKYA-RQNGIHVSPTFMINGLVQPGMSSGDPVSKWVS 179
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 85.0 bits (209), Expect = 1e-17
Identities = 22/172 (12%), Positives = 43/172 (25%), Gaps = 3/172 (1%)
Query: 56 KDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST 115
+ +VE TC HCA F +K + + +
Sbjct: 16 DGRPFAPLAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFA 75
Query: 116 VAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLN 175
A + A + +++ D L G + F N
Sbjct: 76 RAYLAADVLGV--AKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFN 133
Query: 176 DQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQ 227
+ +A + + TP + G + +I D ++
Sbjct: 134 GPEVEKRFQAARA-YALKVRPVGTPTIVVNGRYMVTGHDFEDTLRITDYLVS 184
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 83.7 bits (206), Expect = 4e-17
Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 11/172 (6%)
Query: 60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119
+ ++E+ + TC HCA + + KT +L++ P+ +
Sbjct: 20 PSDTPGKIEVLEFFAYTCPHCAAIEPMV-----EDWAKTAPQDVVLKQVPIA-FNAGMKP 73
Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNI 179
L + +F + A+ A G + FD+ + ++
Sbjct: 74 LQQLYYTLQALERPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSV 133
Query: 180 LDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEG----VFSKIIDSMIQ 227
++ + A E ID TP F +GG + G K++D +I
Sbjct: 134 QTQVQRASQLA-EAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIV 184
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
plasmid, oxidoreductase; HET: PE8 P4C P6G; 2.15A
{Salmonella enterica subsp}
Length = 189
Score = 81.2 bits (199), Expect = 2e-16
Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 7/145 (4%)
Query: 64 DAPVTMVEYASMTCFHCAEFHN--KTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLA 121
DAP +VE+ S C C F + + + ++ + A
Sbjct: 14 DAPA-VVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWA 72
Query: 122 RCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILD 181
+ F + D G S+ ++D + + D
Sbjct: 73 LAM---VMKETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVND 129
Query: 182 DIKAGKKRASEDFAIDSTPVFFIGG 206
+ ++ +++ + TP ++ G
Sbjct: 130 MVALQERLF-KEYGVRGTPSVYVRG 153
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli}
Length = 195
Score = 80.1 bits (196), Expect = 4e-16
Identities = 24/186 (12%), Positives = 60/186 (32%), Gaps = 17/186 (9%)
Query: 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVA 117
+ +A T+++ S C C ++ + +K E + +
Sbjct: 10 LEKPIPNADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQAS 69
Query: 118 VMLARC-------------AEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAG 164
+ A A + + + + +K++ W + K+ + AG
Sbjct: 70 EVFAVLINKDKAAGISLFDANSQFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAG 129
Query: 165 FSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL---GDMSEGVFSKI 221
S+ DF+ L + + + ++ K + I P + + G + S + +
Sbjct: 130 MSQADFEAALKEPAVQETLEKWKASY-DVAKIQGVPAYVVNGKYLIYTKSIKSIDAMADL 188
Query: 222 IDSMIQ 227
I +
Sbjct: 189 IRELAS 194
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A
Length = 193
Score = 79.6 bits (195), Expect = 5e-16
Identities = 23/169 (13%), Positives = 42/169 (24%), Gaps = 5/169 (2%)
Query: 60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119
Q+ V ++E+ C HCA K+ +
Sbjct: 19 PQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEH---VVWQKEMLTLAR 75
Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALL-NMAKFAGFSKNDFDTCLNDQN 178
LA + S +F+ + + L + + F
Sbjct: 76 LAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPE 135
Query: 179 ILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQ 227
++ +E F ID P +GG + ID +
Sbjct: 136 SQARADKMQE-LTETFQIDGVPTVIVGGKYKVEFADWESGMNTIDLLAD 183
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.76A
{Vibrio fischeri ES114}
Length = 185
Score = 77.8 bits (190), Expect = 2e-15
Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 10/174 (5%)
Query: 59 SIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAV 118
+ + D + E +++C HC N ++ GK+ + +
Sbjct: 16 TSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAHIASMFYYA 75
Query: 119 MLARCAEKRMDGGYWGFVSLLFNKQDDWINSK--NYRDALLNMAKFAGFSKNDFDTCLND 176
+ F+ LF + ++A G
Sbjct: 76 AEMQVDGAP----DHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQR 131
Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL---GDMSEGVFSKIIDSMIQ 227
++ + K SE I S P F + G + G + I +++
Sbjct: 132 DTLIKKVDNA-KMLSEKSGISSVPTFVVNGKYNVLIGGHDDPKQIADTIRYLLE 184
>3l9s_A Thiol:disulfide interchange protein DSBA; thioredoxin-fold,
thiol-disulfide oxidoreductase, disulfide bond,
periplasm; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2zup_A* 3e9j_B*
1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 76.5 bits (187), Expect = 5e-15
Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 9/167 (5%)
Query: 64 DAPVTMVEYASMTCFHCAEFHN--KTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLA 121
++E+ S C HC +F ++ K + K+ EF + A
Sbjct: 20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWA 79
Query: 122 RCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILD 181
++ + + + + AG D+D N +
Sbjct: 80 VAMALGVEDKVTVP----LFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKS 135
Query: 182 DIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQD 228
+ +K A D + P F+ G + +G+ + +D +Q
Sbjct: 136 LVAQQEKAA-ADLQLQGVPAMFVNGKYQIN--PQGMDTSSMDVFVQQ 179
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 74.3 bits (181), Expect = 2e-14
Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 4/161 (2%)
Query: 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLAR 122
+ + E+ S C HC F + + + K + F ++
Sbjct: 16 ASSSPVVSEFFSFYCPHCNTFEPIIAQLK-QQLPEGAKFQKNHVSFMGGNMGQAMSKAYA 74
Query: 123 CAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDD 182
V ++FN+ L + G FD N +
Sbjct: 75 TMIAL--EVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSM 132
Query: 183 IKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223
++ K+ +D + P + + S + D
Sbjct: 133 VRRFDKQF-QDSGLTGVPAVVVNNRYLVQGQSVKSLDEYFD 172
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 73.4 bits (179), Expect = 4e-14
Identities = 20/169 (11%), Positives = 46/169 (27%), Gaps = 6/169 (3%)
Query: 60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119
++ + ++E+ C HC F K + + + + + +
Sbjct: 17 PQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVV-WQPEMLGLARMA 75
Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNI 179
A ++ ++ N A GF +
Sbjct: 76 AAVNLSGLKYQANPAVFKAVYEQKIRLENRS---VAGKWALSQKGFDGKKLMRAYDSPEX 132
Query: 180 LDDIKAGKKRASEDFAIDSTPVFFIGGNLYL-GDMSEGVFSKIIDSMIQ 227
++ +E + IDSTP +GG + + I ++
Sbjct: 133 XXXXLKM-QKLTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVA 180
>1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active
center; 1.90A {Escherichia coli} SCOP: c.47.1.13 PDB:
1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 1ac1_A
1fvj_A 3dks_A 1bq7_A 1u3a_A* 1ti1_A* 2hi7_A* 2zup_A*
3e9j_B* 2b6m_A 2b3s_A
Length = 189
Score = 70.4 bits (171), Expect = 3e-13
Identities = 22/166 (13%), Positives = 40/166 (24%), Gaps = 4/166 (2%)
Query: 64 DAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARC 123
++E+ S C C +F K ++ +
Sbjct: 17 AGAPQVLEFFSFFCPSCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAW 76
Query: 124 AEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDI 183
A G LF + ++ AG ++D N + +
Sbjct: 77 AVAMALGVEDKVTVPLFEGVQKTQT-IRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLV 135
Query: 184 KAGKKRASEDFAIDSTPVFFIGGN--LYLGDMSEGVFSKIIDSMIQ 227
+K A D + P F+ G L M +
Sbjct: 136 AQQEKAA-ADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYAD 180
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 55.1 bits (132), Expect = 1e-08
Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 36/188 (19%)
Query: 45 RALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYI 104
+ + G+KDAPV + +A C +C +F + ++ +GK++
Sbjct: 77 GREMWQRMEQSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQA-----RPWVDSGKVQLR 131
Query: 105 LREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAG 164
+ + A I + + +G
Sbjct: 132 TLLVGVIKPESPATA-------------------------AAILASKDPAKTWQQYEASG 166
Query: 165 FSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGV-----FS 219
+ + +K +D + TP + + G+ +
Sbjct: 167 GKLKLNVPANVSTEQMKVLSDNEKLM-DDLGANVTPAIYYMSKENTLQQAVGLPDQKTLN 225
Query: 220 KIIDSMIQ 227
I+ + +Q
Sbjct: 226 IIMGNKLQ 233
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 54.6 bits (131), Expect = 2e-08
Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 41/191 (21%)
Query: 45 RALLAASPSTMKDVSI--GQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLR 102
+L + ++ I + + +TC +C + H + + D +R
Sbjct: 64 NKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLH----EQMADYNALGITVR 119
Query: 103 YILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKF 162
Y+ FP + + A + D DD + K+ A
Sbjct: 120 YLA--FPRQGLDSDAEKEMKAIWCAKDKNKA---------FDDVMAGKSVAPA------- 161
Query: 163 AGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKI 221
+C D +I D G + + TP + G L G +
Sbjct: 162 ---------SC--DVDIADHYALGVQ-----LGVSGTPAVVLSNGTLVPGYQPPKEMKEF 205
Query: 222 IDSMIQDSTRR 232
+D + ++ +
Sbjct: 206 LDEHQKMTSGK 216
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain ATCC
700825 / FA 1090), DSBC, structural genomics, unknown
function; 2.00A {Neisseria gonorrhoeae fa 1090}
Length = 147
Score = 43.6 bits (102), Expect = 4e-05
Identities = 19/173 (10%), Positives = 40/173 (23%), Gaps = 39/173 (22%)
Query: 56 KDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST 115
K + + + + + ++ C C ++ K + +++ L +
Sbjct: 5 KAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKMTDVTVY-----SFMMPIAGLHPDAA 59
Query: 116 VAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLN 175
+ C R G C
Sbjct: 60 RKAQILWCQPDRAK--------------------------AWTDWMRKGKFPVGGSIC-- 91
Query: 176 DQNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKIIDSMIQ 227
D + + G++ F + TP G G +II Q
Sbjct: 92 DNPVAETTSLGEQ-----FGFNGTPTLVFPNGRTQSGYSPMPQLEEIIRKNQQ 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.7 bits (95), Expect = 3e-04
Identities = 36/256 (14%), Positives = 70/256 (27%), Gaps = 96/256 (37%)
Query: 19 IASYFFYTRKGSALNELPIPDGVVDFRALLAASPSTMKDVSI-----GQKDAPVTMVEYA 73
I +Y P AL A + + GQ + +
Sbjct: 123 IKNYI---TARIMAKR-PFDKKSNS--ALFRAVGE--GNAQLVAIFGGQGNT-----D-- 167
Query: 74 SMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYW 133
F E + L Y ++ + + + L R
Sbjct: 168 --DYF--EELRD-----LYQTY------HVLVGDL-IKFSAETLSELIRTTLDAEK---- 207
Query: 134 GFVSLLFNKQDD---WINSKNYR-D--------------ALLNMAKFA------GFSKND 169
+F + + W+ + + D ++ +A + GF+ +
Sbjct: 208 -----VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 170 FDTCL-----NDQNILDDIKAGKKRAS---EDF------AIDSTPVFFIG--GNLYLGDM 213
+ L + Q + + A + E F AI T +FFIG +
Sbjct: 263 LRSYLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNT 317
Query: 214 SEGVFSKIIDSMIQDS 229
S + S+++DS
Sbjct: 318 S------LPPSILEDS 327
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 40.3 bits (94), Expect = 4e-04
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 154 DALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDM 213
+ ++ AG ++D N + + +K A D + P F+ G L
Sbjct: 7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAA-ADVQLRGVPAMFVNGKYQLNPQ 65
Query: 214 SEGVFSKII 222
+ +
Sbjct: 66 GMDTSNMDV 74
Score = 33.8 bits (77), Expect = 0.034
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 4/81 (4%)
Query: 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDS--VSTVAVML 120
++E+ S C HC +F K ++ +
Sbjct: 111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQA 170
Query: 121 ARCAEKRMDGGYWGFVSLLFN 141
A G LF
Sbjct: 171 WAVAMAL--GVEDKVTVPLFE 189
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase
SCO1869, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Length = 239
Score = 35.0 bits (79), Expect = 0.016
Identities = 26/214 (12%), Positives = 52/214 (24%), Gaps = 17/214 (7%)
Query: 21 SYFFYTRKGSALNELPIPDGV-VDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFH 79
Y R AL P DGV V R+ V+
Sbjct: 16 CYVGKARFEKALAAFPHRDGVEVVHRSFE------------LDPGRAKDDVQPVLTMLTA 63
Query: 80 CAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLL 139
+ + ED + + + + G + +
Sbjct: 64 KYGMSQEQAQAGEDNLGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERGRHEALLDAF 123
Query: 140 FNKQDDWINSKNYRDALLNMAKFAGFSKND--FDTCLNDQNILDDIKAGKKRASEDFAID 197
+ S D L + + D+++A ++ A++
Sbjct: 124 YRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLG-AT 182
Query: 198 STPVFFIGGNLYL-GDMSEGVFSKIIDSMIQDST 230
P F + + G VF++ + + T
Sbjct: 183 GVPFFVLDRAYGVSGAQPAEVFTQALTQAWGERT 216
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 33.6 bits (76), Expect = 0.037
Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 41/172 (23%)
Query: 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPL-DSVSTV 116
+ K+ + + +TC +C H + +Y + +RY+ ++ +
Sbjct: 79 IVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI----TVRYLAFPRAGMNNQTAK 134
Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLND 176
+ A+ A N
Sbjct: 135 QMEAIWTAKDP------------------------------VFALNEAEKGNLPKEVKTP 164
Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKIIDSMIQ 227
+ + G + F + TP G L G + + ++ Q
Sbjct: 165 NIVKKHYELGIQ-----FGVRGTPSIVTSTGELIGGYLKPADLLRALEETAQ 211
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.15
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 184 KAGKK-RAS-EDFAIDSTPVFFIGGNL 208
+A KK +AS + +A DS P I +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
Score = 29.2 bits (64), Expect = 0.84
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 92 EDKYIKTGKLRYILREFPLDSVSTVAV 118
E + +K KL+ L+ + DS +A+
Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAI 42
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} SCOP:
a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B*
3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B*
3hxf_B*
Length = 331
Score = 27.2 bits (60), Expect = 3.6
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 16/86 (18%)
Query: 94 KYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYR 153
YI Y ++ + + + RM G YWG + Q +N +
Sbjct: 25 DYIA----SYGSKKDDYEYCMSEYL--------RMSGVYWGLTVMDLMGQLHRMNKEEIL 72
Query: 154 DALLNMAK----FAGFSKNDFDTCLN 175
+ + + +D
Sbjct: 73 VFIKSCQHECGGVSASIGHDPHLLYT 98
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.138 0.410
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,980,226
Number of extensions: 87737
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 36
Length of query: 232
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 143
Effective length of database: 3,535,514
Effective search space: 505578502
Effective search space used: 505578502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)