Query gi|254780478|ref|YP_003064891.1| hypothetical protein CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 161 No_of_seqs 116 out of 644 Neff 6.7 Searched_HMMs 33803 Date Wed Jun 1 13:18:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780478.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2e0g_A Chromosomal replicatio 67.2 9.5 0.00028 18.8 7.4 62 36-112 19-82 (107) 2 >1ufw_A Synaptojanin 2; RNP do 35.0 32 0.00095 15.5 3.1 46 65-110 3-49 (83) 3 >2uva_G Fatty acid synthase be 30.3 39 0.0011 15.0 2.5 20 77-96 2-21 (67) 4 >1dgj_A Aldehyde oxidoreductas 27.0 44 0.0013 14.7 3.5 90 64-159 13-103 (121) 5 >1v97_A XD, xanthine dehydroge 25.0 48 0.0014 14.4 5.1 88 64-160 14-102 (126) 6 >1hlm_A Hemoglobin (cyano Met) 24.8 45 0.0013 14.6 2.0 28 128-155 46-73 (100) 7 >1vlb_A Aldehyde oxidoreductas 24.2 50 0.0015 14.3 2.7 90 64-159 13-103 (122) 8 >1ffv_B CUTL, molybdoprotein o 21.2 57 0.0017 14.0 6.8 88 64-160 47-135 (185) 9 >1col_A Colicin A; antibacteri 19.8 47 0.0014 14.5 1.3 75 79-157 33-107 (204) 10 >2w3s_B Xanthine dehydrogenase 18.9 64 0.0019 13.7 6.0 87 64-159 14-101 (145) No 1 >>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12} (A:) Probab=67.21 E-value=9.5 Score=18.77 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=43.2 Q ss_pred HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHH--HHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCC Q ss_conf 89994311121330554444433345678837999935906999--999899999999986273100025778557784 Q gi|254780478|r 36 SNIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEGSHALF--LMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSI 112 (161) Q Consensus 36 ~~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~~~a~e--l~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~ 112 (161) ..+..|-.|.++.. .+++|+|.|.+.++.+ -+...+.|.+-+...+|.. +..|.|+...... T Consensus 19 ~~f~~Wi~~~~~~~--------------~~~~l~l~vpn~f~~~~ie~~y~~~i~~~~~~~~g~~-~~~i~~~~~~~~~ 82 (107) T 2e0g_A 19 TEFSMWIRPLQAEL--------------SDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGAD-APQLRFEVGTKPV 82 (107) T ss_dssp CHHHHTTTTSEEEE--------------CSSEEEEEESSHHHHHHHHHTHHHHHHHHHHHHTSSS-CCEECCEESSCCC T ss_pred HHHHHHHHHCEEEE--------------ECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCC T ss_conf 99998873266888--------------7999999979889999999999999999999985899-7459999767777 No 2 >>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} (A:13-95) Probab=34.99 E-value=32 Score=15.50 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=34.5 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHC-HHHHHEEEEEECCC Q ss_conf 83799993590699999989999999998627-31000257785577 Q gi|254780478|r 65 SGTLIIACEGSHALFLMHDQSKIIRNVNIFFG-FCAIKRIRFLQRSM 110 (161) Q Consensus 65 ~g~L~i~v~~~~a~el~~~~~~Ii~riN~~~G-~~aI~~I~~~q~~~ 110 (161) +||.+|+..++.+-|=...-++|++.+-.+|+ +.-|..+||+.+.. T Consensus 3 DgTI~V~~~~~s~ee~~~fdd~~~~~L~e~f~~~GeV~lVR~~~~~~ 49 (83) T 1ufw_A 3 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQM 49 (83) T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEE T ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCEE T ss_conf 96799996268854345588799999999864176599999948818 No 3 >>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* (G:873-909,G:1008-1037) Probab=30.26 E-value=39 Score=15.01 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHC Q ss_conf 99999989999999998627 Q gi|254780478|r 77 ALFLMHDQSKIIRNVNIFFG 96 (161) Q Consensus 77 a~el~~~~~~Ii~riN~~~G 96 (161) ..+|+..++.||+|+|.-|- T Consensus 2 ~~~L~~~k~yII~rLN~Dfq 21 (67) T 2uva_G 2 VAELKKRRDYIIKKLNDDFQ 21 (67) T ss_dssp HHHHHHSHHHHHHHHHHHSS T ss_pred HHHHHHHHHHHHHHHHCCCC T ss_conf 99999869999999725566 No 4 >>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} (A:630-750) Probab=27.04 E-value=44 Score=14.67 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=48.6 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH Q ss_conf 88379999359-06999999899999999986273100025778557784443554556679846799999986039998 Q gi|254780478|r 64 VSGTLIIACEG-SHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDE 142 (161) Q Consensus 64 ~~g~L~i~v~~-~~a~el~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~ 142 (161) .+|+++|.+.. .+.+=..-...+|+...=..+|-. +.+|++.++...........-......-.-..+....+ T Consensus 13 ~dG~v~v~~g~~e~GQG~~T~~~qi~Ae~L~~~Gi~-~~~I~v~~~DT~~~p~~~gt~gSr~t~~~g~a~~~Aa~----- 86 (121) T 1dgj_A 13 DDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGIT-PENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAIRVACE----- 86 (121) T ss_dssp TTSCEEEEECCCCSSSCHHHHHHHHHHHHTGGGTCC-GGGEEEEESBTTTSCCCCCSCTTCTTTHHHHHHHHHHH----- T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-HHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----- T ss_conf 893799997875667870378999999999984999-76769970787888998986347789999999999999----- Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999988863320 Q gi|254780478|r 143 QLKRALIRFGHAVVGCS 159 (161) Q Consensus 143 eLr~AL~rLg~~vl~~~ 159 (161) +||+.|.+.++..+|++ T Consensus 87 ~lr~~l~~~aa~~~~v~ 103 (121) T 1dgj_A 87 MLIEGMRKPGGGFFTPA 103 (121) T ss_dssp HHHHHTBCSSSSBCCHH T ss_pred HHHHHHHHHCCCCCCHH T ss_conf 99998675435347734 No 5 >>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:1012-1137) Probab=24.98 E-value=48 Score=14.43 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=50.6 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH Q ss_conf 88379999359-06999999899999999986273100025778557784443554556679846799999986039998 Q gi|254780478|r 64 VSGTLIIACEG-SHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDE 142 (161) Q Consensus 64 ~~g~L~i~v~~-~~a~el~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~ 142 (161) .+|++.|.+.. .+.+=....-.+|.. ..+|-. ..+|++.++...........-.......--..+.+..+ T Consensus 14 ~dG~v~v~~g~~e~GQG~~T~~~qi~A---e~Lgi~-~~~V~v~~~DT~~~p~~~gt~gSrst~~~g~Av~~Aa~----- 84 (126) T 1v97_A 14 TDGSVLVSHGGTEMGQGLHTKMVQVAS---KALKIP-ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQ----- 84 (126) T ss_dssp TTSCEEEEESCCCSSSCHHHHHHHHHH---HHHTSC-GGGEECCCEETTTSCSCCCSCTTCHHHHHHHHHHHHHH----- T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHH---HHHCCC-HHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH----- T ss_conf 798789985775678775789999999---996998-77689971687778898997421688989999999999----- Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999888633202 Q gi|254780478|r 143 QLKRALIRFGHAVVGCSY 160 (161) Q Consensus 143 eLr~AL~rLg~~vl~~~~ 160 (161) +||+.|..++...+++++ T Consensus 85 ~lr~~l~~~aa~~~~~~~ 102 (126) T 1v97_A 85 TILKRLEPFKKKNPDGSW 102 (126) T ss_dssp HHHHHHHHHHHHSTTCCH T ss_pred HHHHHHHHHHHHCCCCCH T ss_conf 999999999865779988 No 6 >>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} (A:32-131) Probab=24.81 E-value=45 Score=14.61 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=23.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 7999999860399989999999998886 Q gi|254780478|r 128 DCEKIDKMTEGIKDEQLKRALIRFGHAV 155 (161) Q Consensus 128 ~~~~l~~~l~~I~d~eLr~AL~rLg~~v 155 (161) -...+...++.++|++|...|.+||..= T Consensus 46 v~~~l~~~i~~ld~~~l~~~l~~Lg~~H 73 (100) T 1hlm_A 46 VSALMTTYIDEMDTEVLPELLATLTRTH 73 (100) T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 9999998601221677768999999987 No 7 >>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} (A:628-749) Probab=24.19 E-value=50 Score=14.34 Aligned_cols=90 Identities=12% Similarity=0.030 Sum_probs=49.6 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH Q ss_conf 88379999359-06999999899999999986273100025778557784443554556679846799999986039998 Q gi|254780478|r 64 VSGTLIIACEG-SHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDE 142 (161) Q Consensus 64 ~~g~L~i~v~~-~~a~el~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~ 142 (161) .+|+..|.+.. .+.+-....-.+|+...=..+|.. +.+|.+.++...........-.......--..+....+ T Consensus 13 ~dG~v~v~~~~~e~GqG~~T~~aqi~Ae~L~~~Gi~-~~~v~v~~~DT~~~p~~~~t~gSr~t~~~g~a~~~A~~----- 86 (122) T 1vlb_A 13 ADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVA-PEKIKFTWPNTATTPNSGPSGGSRQQVMTGNAIRVACE----- 86 (122) T ss_dssp TTSCEEEECCCCCSSSCHHHHHHHHHHHHHGGGTCC-GGGEEECCCBTTTSCCCCCSCTTCHHHHHHHHHHHHHH----- T ss_pred CCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCC-HHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHH----- T ss_conf 267521203533455553112222112331025868-78832335677678898765440232114635899999----- Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999988863320 Q gi|254780478|r 143 QLKRALIRFGHAVVGCS 159 (161) Q Consensus 143 eLr~AL~rLg~~vl~~~ 159 (161) +||+.|..+++..+++. T Consensus 87 ~lr~~L~~~Aa~~~~v~ 103 (122) T 1vlb_A 87 NLLKACEKPGGGYYTYD 103 (122) T ss_dssp HHHHHHBCTTSSBCCHH T ss_pred HHHHHHHHHHCCCCCHH T ss_conf 99999975405555577 No 8 >>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} (B:1-30,B:493-647) Probab=21.24 E-value=57 Score=13.98 Aligned_cols=88 Identities=9% Similarity=0.010 Sum_probs=52.8 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH Q ss_conf 88379999359-06999999899999999986273100025778557784443554556679846799999986039998 Q gi|254780478|r 64 VSGTLIIACEG-SHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDE 142 (161) Q Consensus 64 ~~g~L~i~v~~-~~a~el~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~ 142 (161) .+|+..|.+.. .+.+=..-.-.+|.... +|-. +.+|++.++...........-.......--..+....+ T Consensus 47 ~DG~v~v~~g~~e~GQG~~T~laqIaAe~---Lgi~-~d~V~v~~gDT~~~p~~~gt~gSrst~~~g~Av~~Aa~----- 117 (185) T 1ffv_B 47 PTGSAIARMGTITQGQGHQTTYAQIIATE---LGIP-SEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIALAAR----- 117 (185) T ss_dssp TTSCEEEEESCCCSSSCHHHHHHHHHHHH---HTCC-GGGEEEECCBTTTSCCCCCSCTTCHHHHHHHHHHHHHH----- T ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHH---HCCC-CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----- T ss_conf 28968997345456887400257889998---5898-30789852688877788987654664454689999999----- Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999888633202 Q gi|254780478|r 143 QLKRALIRFGHAVVGCSY 160 (161) Q Consensus 143 eLr~AL~rLg~~vl~~~~ 160 (161) +||+.|..+++..++++. T Consensus 118 ~lr~~L~~~AA~~l~~~~ 135 (185) T 1ffv_B 118 KIHAKARKIAAHMLEVNE 135 (185) T ss_dssp HHHHHHHHHHHHHTTSCG T ss_pred HHHHHHHHHHHHHCCCCH T ss_conf 999976777887618982 No 9 >>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} (A:) Probab=19.84 E-value=47 Score=14.48 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=49.8 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999899999999986273100025778557784443554556679846799999986039998999999999888633 Q gi|254780478|r 79 FLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVG 157 (161) Q Consensus 79 el~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg~~vl~ 157 (161) .......+|.+.++.|=|-. ||=.+..+...+..........+..+...+...++.++-.+|-+-|.+|+..-=. T Consensus 33 Ky~~~A~elA~~iKnfqGKk----IRs~~eAl~s~eK~k~n~~~Ki~~kDr~AI~~Al~si~~~~la~nl~~~sK~f~~ 107 (204) T 1col_A 33 KYKAIAKDIADNIKNFQGKT----IRSFDDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMANKLGNLSKAFKV 107 (204) T ss_dssp HHHHHHHHHHHHHHTCTTCC----CCCHHHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHHHHHHHHCGGGCC T ss_pred HHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC T ss_conf 99999999999876505876----5779999999999983641322473399999999966899999999999865163 No 10 >>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* (B:462-606) Probab=18.87 E-value=64 Score=13.66 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=49.0 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH Q ss_conf 88379999359-06999999899999999986273100025778557784443554556679846799999986039998 Q gi|254780478|r 64 VSGTLIIACEG-SHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDE 142 (161) Q Consensus 64 ~~g~L~i~v~~-~~a~el~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~ 142 (161) .+|.+.|.+.. .+.+=.+..-.+|... .+|-. +.+|+++++...........-...-..---..+....+ T Consensus 14 ~DG~v~v~~g~~e~GQG~~T~~aqi~Ae---~LGi~-~~~V~v~~~DT~~~p~~~~t~aSr~t~~~g~Av~~Aa~----- 84 (145) T 2w3s_B 14 TDGSVALNHGGTEMGQGLHAKMVQVAAA---VLGID-PVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACE----- 84 (145) T ss_dssp TTSCEEEEESCCCSSSCHHHHHHHHHHH---HHTSC-GGGEEECCEETTTSCSCCCSCTTCHHHHHHHHHHHHHH----- T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHH---HHCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----- T ss_conf 7997799836756778678899999999---96899-62699982798778886644686531123689999999----- Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999988863320 Q gi|254780478|r 143 QLKRALIRFGHAVVGCS 159 (161) Q Consensus 143 eLr~AL~rLg~~vl~~~ 159 (161) +||+.|..+++..+||. T Consensus 85 ~lr~~l~~~Aa~~~~~~ 101 (145) T 2w3s_B 85 TLRGRLAGFVAAREGCA 101 (145) T ss_dssp HHHHHHHHHHHHHHTSC T ss_pred HHHHHHHHHHHHHCCCC T ss_conf 99999999988761998 Done!