Query gi|254780478|ref|YP_003064891.1| hypothetical protein CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 161
No_of_seqs 116 out of 644
Neff 6.7
Searched_HMMs 23785
Date Mon May 30 11:43:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780478.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e0g_A Chromosomal replication 67.4 6.6 0.00028 18.8 7.7 59 37-110 20-80 (107)
2 1w3i_A EDA, 2-keto-3-deoxy glu 39.6 19 0.00081 15.9 3.4 68 77-152 221-289 (293)
3 3bh1_A UPF0371 protein DIP2346 19.0 45 0.0019 13.7 2.2 17 136-152 440-456 (507)
4 1col_A Colicin A; antibacteria 15.8 47 0.002 13.5 1.3 76 79-158 33-108 (204)
5 1to2_I Chymotrypsin inhibitor 15.1 21 0.00089 15.7 -0.6 11 27-37 2-12 (64)
6 1cq4_A Protein (serine protein 14.1 31 0.0013 14.7 0.0 12 27-38 2-13 (47)
7 1jjr_A KU70, thyroid autoantig 14.0 53 0.0022 13.2 1.2 14 84-97 84-97 (151)
8 2d28_C XPSE, type II secretion 12.8 64 0.0027 12.7 5.1 12 65-76 103-114 (149)
9 3bhp_A UPF0291 protein YNZC; N 12.1 41 0.0017 13.9 0.1 14 83-96 2-15 (60)
10 2do5_A Splicing factor 3B subu 11.3 42 0.0018 13.9 0.0 22 74-95 9-42 (58)
No 1
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12}
Probab=67.39 E-value=6.6 Score=18.79 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHH--HHHHHHHHHHHHHHHHCHHHHHEEEEEECCC
Q ss_conf 9994311121330554444433345678837999935906999--9998999999999862731000257785577
Q gi|254780478|r 37 NIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEGSHALF--LMHDQSKIIRNVNIFFGFCAIKRIRFLQRSM 110 (161)
Q Consensus 37 ~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~~~a~e--l~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~ 110 (161)
.+..|-.|+++.. .+++|+|.|.+.+.-+ -++..+.|.+.+-..+|.. +.+|.|..+..
T Consensus 20 ~f~tWi~pl~~~~--------------~~~~l~l~vPn~F~~~wi~~~Y~~~I~~~~~~~~g~~-~~~i~~~v~~~ 80 (107)
T 2e0g_A 20 EFSMWIRPLQAEL--------------SDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGAD-APQLRFEVGTK 80 (107)
T ss_dssp HHHHTTTTSEEEE--------------CSSEEEEEESSHHHHHHHHHTHHHHHHHHHHHHTSSS-CCEECCEESSC
T ss_pred HHHHHHCCCEEEE--------------ECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCC
T ss_conf 9997517877998--------------7999999979889999999999999999999985899-73599997478
No 2
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A*
Probab=39.57 E-value=19 Score=15.94 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHEEEEE-ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999899999999986273100025778-5577844435545566798467999999860399989999999998
Q gi|254780478|r 77 ALFLMHDQSKIIRNVNIFFGFCAIKRIRFL-QRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFG 152 (161)
Q Consensus 77 a~el~~~~~~Ii~riN~~~G~~aI~~I~~~-q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg 152 (161)
|.++|..-..+++-++.+.++.++.+.... +|. . -.....+..+++.++.+++.+.++. |+..|..+|
T Consensus 221 A~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~-~--~g~~R~P~~~l~~~~~~~l~~~l~~-----l~~~l~e~~ 289 (293)
T 1w3i_A 221 ALKLQFLHDEVIEASRIFGSLSSNYVLTKYFQGY-D--LGYPRPPIFPLDDEEERQLIKKVEG-----IRAKLVELK 289 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-C--CBCCCTTSCCCCHHHHHHHHHHHHH-----HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-C--CCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHCC
T ss_conf 9999999999999998617617999999997599-9--9995999999999999999999999-----999999768
No 3
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure initiative, PSI-2; 2.51A {Corynebacterium diphtheriae NCTC13129}
Probab=19.03 E-value=45 Score=13.69 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHCCCCHHHHHHHHHHH
Q ss_conf 60399989999999998
Q gi|254780478|r 136 TEGIKDEQLKRALIRFG 152 (161)
Q Consensus 136 l~~I~d~eLr~AL~rLg 152 (161)
+....||.-+.||..|.
T Consensus 440 isA~tn~~A~~Al~qL~ 456 (507)
T 3bh1_A 440 VSAATDSNAQKALDQLK 456 (507)
T ss_dssp HHTTTCHHHHHHHTTGG
T ss_pred HHHCCCHHHHHHHHHHH
T ss_conf 88438999999998556
No 4
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=15.80 E-value=47 Score=13.54 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999862731000257785577844435545566798467999999860399989999999998886332
Q gi|254780478|r 79 FLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGC 158 (161)
Q Consensus 79 el~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg~~vl~~ 158 (161)
+......+|-+.++.|=|-. ||=.+......+..........+..+...+...++.++-.++-+-|.+|+..-=.+
T Consensus 33 ky~~~A~elA~~~KnfqGKk----IRs~~dAl~s~eK~k~nlnkKi~~kDr~AI~nAles~d~~~~A~nl~~~sK~f~~~ 108 (204)
T 1col_A 33 KYKAIAKDIADNIKNFQGKT----IRSFDDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMANKLGNLSKAFKVA 108 (204)
T ss_dssp HHHHHHHHHHHHHHTCTTCC----CCCHHHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHHHHHHHHCGGGCCT
T ss_pred HHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCH
T ss_conf 99999999999877505873----57899999999998746655513514999999999748999999999998760533
No 5
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=15.12 E-value=21 Score=15.68 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 96266631089
Q gi|254780478|r 27 VSAWSEIVGSN 37 (161)
Q Consensus 27 ~~~W~~IVG~~ 37 (161)
.+.|+++||..
T Consensus 2 K~sWPELVG~~ 12 (64)
T 1to2_I 2 KTEWPELVGKS 12 (64)
T ss_dssp CCBCGGGTTSB
T ss_pred CCCCHHHCCCC
T ss_conf 86683115979
No 6
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=14.11 E-value=31 Score=14.69 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 962666310899
Q gi|254780478|r 27 VSAWSEIVGSNI 38 (161)
Q Consensus 27 ~~~W~~IVG~~~ 38 (161)
.+.|+++||...
T Consensus 2 K~sWPELVG~~~ 13 (47)
T 1cq4_A 2 KTEWPELVGKSV 13 (47)
T ss_dssp CCBCGGGTTSBH
T ss_pred CCCCHHHCCCCH
T ss_conf 876764439749
No 7
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=13.95 E-value=53 Score=13.20 Aligned_cols=14 Identities=7% Similarity=0.244 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHCH
Q ss_conf 99999999986273
Q gi|254780478|r 84 QSKIIRNVNIFFGF 97 (161)
Q Consensus 84 ~~~Ii~riN~~~G~ 97 (161)
+.++|+||..||..
T Consensus 84 K~~Li~rl~~~~~~ 97 (151)
T 1jjr_A 84 KQELLEALTKHFQD 97 (151)
T ss_dssp SHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999986
No 8
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=12.85 E-value=64 Score=12.71 Aligned_cols=12 Identities=17% Similarity=0.100 Sum_probs=8.8
Q ss_pred CCEEEEEECCCH
Q ss_conf 837999935906
Q gi|254780478|r 65 SGTLIIACEGSH 76 (161)
Q Consensus 65 ~g~L~i~v~~~~ 76 (161)
+++|+|.+..+.
T Consensus 103 ~~~l~VA~~dP~ 114 (149)
T 2d28_C 103 DGRLDLWIADPY 114 (149)
T ss_dssp TTEEEEEESCTT
T ss_pred CCEEEEEEECCC
T ss_conf 886899987999
No 9
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=12.10 E-value=41 Score=13.94 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 89999999998627
Q gi|254780478|r 83 DQSKIIRNVNIFFG 96 (161)
Q Consensus 83 ~~~~Ii~riN~~~G 96 (161)
+.++.|+|||.+.-
T Consensus 2 ~~~e~I~RINeLak 15 (60)
T 3bhp_A 2 ISNAKIARINELAA 15 (60)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 86889999999999
No 10
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=11.34 E-value=42 Score=13.86 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=12.6
Q ss_pred CCH-HHHHHHH-----------HHHHHHHHHHHH
Q ss_conf 906-9999998-----------999999999862
Q gi|254780478|r 74 GSH-ALFLMHD-----------QSKIIRNVNIFF 95 (161)
Q Consensus 74 ~~~-a~el~~~-----------~~~Ii~riN~~~ 95 (161)
++| ++|||.. +.++++|+..|.
T Consensus 9 ~~W~~~ELQaKLaE~GAP~~G~REElidRLk~Y~ 42 (58)
T 2do5_A 9 GAWAAQELQAKLAEIGAPIQGNREELVERLQSYT 42 (58)
T ss_dssp CSSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 4322889999999828987687899999999876
Done!