Query gi|254780478|ref|YP_003064891.1| hypothetical protein CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 161 No_of_seqs 116 out of 644 Neff 6.7 Searched_HMMs 13730 Date Wed Jun 1 05:40:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780478.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1kn0a_ d.50.1.3 (A:) The homo 44.9 6.9 0.0005 17.2 2.6 29 132-160 115-143 (184) 2 d1cola_ f.1.1.1 (A:) Colicin A 21.6 14 0.001 15.3 0.9 75 80-158 30-104 (197) 3 d1to2i_ d.40.1.1 (I:) Chymotry 15.9 11 0.00082 15.9 -0.6 12 26-37 1-12 (64) 4 d1dwma_ d.40.1.1 (A:) Trypsin 10.3 28 0.002 13.5 0.0 11 27-37 7-17 (69) 5 d1a87a_ f.1.1.1 (A:) Colicin N 9.4 33 0.0024 13.0 0.1 74 81-158 129-202 (297) 6 d1w3ia_ c.1.10.1 (A:) 2-keto-3 9.1 50 0.0036 11.9 3.3 67 78-152 222-289 (293) 7 d1nvmb2 d.81.1.1 (B:132-286) A 8.5 53 0.0039 11.8 3.9 40 67-106 79-119 (155) 8 d1rsoa_ a.194.1.1 (A:) Presyna 7.8 57 0.0041 11.6 3.2 24 129-152 12-35 (60) 9 g1hym.1 d.40.1.1 (A:,B:) Tryps 7.7 28 0.002 13.5 -0.8 10 28-37 7-16 (68) 10 d1w2za3 d.17.2.1 (A:99-206) Co 7.6 58 0.0042 11.5 2.8 29 122-152 3-31 (108) No 1 >d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]} Probab=44.92 E-value=6.9 Score=17.20 Aligned_cols=29 Identities=34% Similarity=0.563 Sum_probs=17.0 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 99986039998999999999888633202 Q gi|254780478|r 132 IDKMTEGIKDEQLKRALIRFGHAVVGCSY 160 (161) Q Consensus 132 l~~~l~~I~d~eLr~AL~rLg~~vl~~~~ 160 (161) +++..+.=....||.||..||..+=-|-| T Consensus 115 ~~~a~KeA~TDAlKRA~~~FGn~lG~~LY 143 (184) T d1kn0a_ 115 LEKARKEAVTDGLKRALRSFGNALGNCIL 143 (184) T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGTTSTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 78898888879999999997788756751 No 2 >d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]} Probab=21.62 E-value=14 Score=15.32 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9998999999999862731000257785577844435545566798467999999860399989999999998886332 Q gi|254780478|r 80 LMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGC 158 (161) Q Consensus 80 l~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg~~vl~~ 158 (161) ..-+..+|.+.++.|.|-. ||=+.......++.........+..+...+..-++.++-.++-+-|.+|+..-=++ T Consensus 30 y~~lA~elA~~~K~fqGK~----IRs~~dAl~s~eK~~~~lnkK~s~~Dr~AI~nAl~sid~~~ma~nl~~~sK~f~~~ 104 (197) T d1cola_ 30 YKAIAKDIADNIKNFQGKT----IRSFDDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMANKLGNLSKAFKVA 104 (197) T ss_dssp HHHHHHHHHHHHHTCTTCC----CCCHHHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHHHHHHHHCGGGCCT T ss_pred HHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCH T ss_conf 9999999999876505876----57799999999999846403224733999999999658999999999998653622 No 3 >d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]} Probab=15.95 E-value=11 Score=15.89 Aligned_cols=12 Identities=33% Similarity=0.960 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 996266631089 Q gi|254780478|r 26 LVSAWSEIVGSN 37 (161) Q Consensus 26 l~~~W~~IVG~~ 37 (161) +.+.|+++||.. T Consensus 1 ~K~sWPELVG~~ 12 (64) T d1to2i_ 1 MKTEWPELVGKS 12 (64) T ss_dssp -CCBCGGGTTSB T ss_pred CCCCCHHHCCCC T ss_conf 986686465988 No 4 >d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]} Probab=10.34 E-value=28 Score=13.48 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=7.9 Q ss_pred HHHHHHHHHHH Q ss_conf 96266631089 Q gi|254780478|r 27 VSAWSEIVGSN 37 (161) Q Consensus 27 ~~~W~~IVG~~ 37 (161) .+.|+++||.. T Consensus 7 K~sWPELVG~~ 17 (69) T d1dwma_ 7 KNAWPELVGKS 17 (69) T ss_dssp CSBCGGGTTSB T ss_pred CCCCHHHCCCC T ss_conf 77377777978 No 5 >d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]} Probab=9.42 E-value=33 Score=13.04 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=47.3 Q ss_pred HHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998999999999862731000257785577844435545566798467999999860399989999999998886332 Q gi|254780478|r 81 MHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGC 158 (161) Q Consensus 81 ~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg~~vl~~ 158 (161) .-+..+|-+.++.|-|-. ||=+.......++.........+..+...+...++.|+-.++-+-|.+||..-=++ T Consensus 129 k~lA~eLA~~aKnfqGKk----IRsvdeALks~eK~~~n~nkKinakDR~AI~nALksid~~~mAkNL~kfsK~Fk~~ 202 (297) T d1a87a_ 129 KNVAKEVANDIKNFHGRN----IRSYNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDMANKIGNLGKAFKVA 202 (297) T ss_dssp HHHHHHHHHHHHTCCGGG----CCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHTCCHHHHHHHHHTTCGGGCCT T ss_pred HHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC T ss_conf 999999998765404774----47899999999998607041155107999999999648999999999997542751 No 6 >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} Probab=9.13 E-value=50 Score=11.92 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHEEE-EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 999998999999999862731000257-785577844435545566798467999999860399989999999998 Q gi|254780478|r 78 LFLMHDQSKIIRNVNIFFGFCAIKRIR-FLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFG 152 (161) Q Consensus 78 ~el~~~~~~Ii~riN~~~G~~aI~~I~-~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg 152 (161) .++|..-..+++-.+.+-++....+.. ..+|-.. .....+..+++.++..++.+.++. ++..|..|| T Consensus 222 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~~---g~~R~Pl~~l~~e~~~~l~~~l~~-----i~~~l~e~~ 289 (293) T d1w3ia_ 222 LKLQFLHDEVIEASRIFGSLSSNYVLTKYFQGYDL---GYPRPPIFPLDDEEERQLIKKVEG-----IRAKLVELK 289 (293) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCC---BCCCTTSCCCCHHHHHHHHHHHHH-----HHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC---CCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHCC T ss_conf 99999999999999862760799999999659999---996999999999999999999999-----999998768 No 7 >d1nvmb2 d.81.1.1 (B:132-286) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Probab=8.48 E-value=53 Score=11.76 Aligned_cols=40 Identities=10% Similarity=0.315 Sum_probs=32.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHH-CHHHHHEEEEE Q ss_conf 79999359069999998999999999862-73100025778 Q gi|254780478|r 67 TLIIACEGSHALFLMHDQSKIIRNVNIFF-GFCAIKRIRFL 106 (161) Q Consensus 67 ~L~i~v~~~~a~el~~~~~~Ii~riN~~~-G~~aI~~I~~~ 106 (161) |++..++.+-.-.+.-.-..+++++.+|. ||+...+..|- T Consensus 79 Tv~~~~~~~d~~~i~~sv~~mv~~Vq~YVPGYrlk~~~~f~ 119 (155) T d1nvmb2 79 TVYVLSAAADQAAVAASVAEMVQAVQAYVPGYRLKQQVQFD 119 (155) T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHHHTTCTTEEESSCCEEE T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC T ss_conf 79998679999999999999999999878995550242000 No 8 >d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=7.80 E-value=57 Score=11.57 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=18.1 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 999999860399989999999998 Q gi|254780478|r 129 CEKIDKMTEGIKDEQLKRALIRFG 152 (161) Q Consensus 129 ~~~l~~~l~~I~d~eLr~AL~rLg 152 (161) .+....++..-+|..||.+++++= T Consensus 12 Le~Y~~~L~~~~D~~lr~~iervI 35 (60) T d1rsoa_ 12 LEEYRSKLSQTEDRQLRSSIERVI 35 (60) T ss_dssp HHHHHHTTSSSSCHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 999998669944188999999999 No 9 >g1hym.1 d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [TaxId: 3661]} Probab=7.69 E-value=28 Score=13.47 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=7.3 Q ss_pred HHHHHHHHHH Q ss_conf 6266631089 Q gi|254780478|r 28 SAWSEIVGSN 37 (161) Q Consensus 28 ~~W~~IVG~~ 37 (161) +.|+++||.. T Consensus 7 ~sWPELVG~~ 16 (68) T g1hym.1 7 SSWPHLVGVG 16 (68) T ss_dssp SBCCCCTTSC T ss_pred CCCHHHCCCC T ss_conf 8376776986 No 10 >d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]} Probab=7.59 E-value=58 Score=11.51 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=0.0 Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 6798467999999860399989999999998 Q gi|254780478|r 122 PALEKDDCEKIDKMTEGIKDEQLKRALIRFG 152 (161) Q Consensus 122 ~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg 152 (161) |.++.++.....+.+.. ||+..+||++.| T Consensus 3 P~lt~eE~~~a~~~~~~--dp~~~~al~~RG 31 (108) T d1w2za3 3 PILSVDEQSLAIKLPLK--YPPFIDSVKKRG 31 (108) T ss_dssp CCCCHHHHHHHTTGGGG--CHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHH--CHHHHHHHHHCC T ss_conf 83479999999999875--999999999849 Done!