Query         gi|254780478|ref|YP_003064891.1| hypothetical protein CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 161
No_of_seqs    116 out of 644
Neff          6.7 
Searched_HMMs 13730
Date          Wed Jun  1 05:40:03 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780478.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1kn0a_ d.50.1.3 (A:) The homo  44.9     6.9  0.0005   17.2   2.6   29  132-160   115-143 (184)
  2 d1cola_ f.1.1.1 (A:) Colicin A  21.6      14   0.001   15.3   0.9   75   80-158    30-104 (197)
  3 d1to2i_ d.40.1.1 (I:) Chymotry  15.9      11 0.00082   15.9  -0.6   12   26-37      1-12  (64)
  4 d1dwma_ d.40.1.1 (A:) Trypsin   10.3      28   0.002   13.5   0.0   11   27-37      7-17  (69)
  5 d1a87a_ f.1.1.1 (A:) Colicin N   9.4      33  0.0024   13.0   0.1   74   81-158   129-202 (297)
  6 d1w3ia_ c.1.10.1 (A:) 2-keto-3   9.1      50  0.0036   11.9   3.3   67   78-152   222-289 (293)
  7 d1nvmb2 d.81.1.1 (B:132-286) A   8.5      53  0.0039   11.8   3.9   40   67-106    79-119 (155)
  8 d1rsoa_ a.194.1.1 (A:) Presyna   7.8      57  0.0041   11.6   3.2   24  129-152    12-35  (60)
  9 g1hym.1 d.40.1.1 (A:,B:) Tryps   7.7      28   0.002   13.5  -0.8   10   28-37      7-16  (68)
 10 d1w2za3 d.17.2.1 (A:99-206) Co   7.6      58  0.0042   11.5   2.8   29  122-152     3-31  (108)

No 1  
>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.92  E-value=6.9  Score=17.20  Aligned_cols=29  Identities=34%  Similarity=0.563  Sum_probs=17.0

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             99986039998999999999888633202
Q gi|254780478|r  132 IDKMTEGIKDEQLKRALIRFGHAVVGCSY  160 (161)
Q Consensus       132 l~~~l~~I~d~eLr~AL~rLg~~vl~~~~  160 (161)
                      +++..+.=....||.||..||..+=-|-|
T Consensus       115 ~~~a~KeA~TDAlKRA~~~FGn~lG~~LY  143 (184)
T d1kn0a_         115 LEKARKEAVTDGLKRALRSFGNALGNCIL  143 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCGGGTTSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             78898888879999999997788756751


No 2  
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=21.62  E-value=14  Score=15.32  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9998999999999862731000257785577844435545566798467999999860399989999999998886332
Q gi|254780478|r   80 LMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGC  158 (161)
Q Consensus        80 l~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg~~vl~~  158 (161)
                      ..-+..+|.+.++.|.|-.    ||=+.......++.........+..+...+..-++.++-.++-+-|.+|+..-=++
T Consensus        30 y~~lA~elA~~~K~fqGK~----IRs~~dAl~s~eK~~~~lnkK~s~~Dr~AI~nAl~sid~~~ma~nl~~~sK~f~~~  104 (197)
T d1cola_          30 YKAIAKDIADNIKNFQGKT----IRSFDDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMANKLGNLSKAFKVA  104 (197)
T ss_dssp             HHHHHHHHHHHHHTCTTCC----CCCHHHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHHHHHHHHCGGGCCT
T ss_pred             HHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCH
T ss_conf             9999999999876505876----57799999999999846403224733999999999658999999999998653622


No 3  
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=15.95  E-value=11  Score=15.89  Aligned_cols=12  Identities=33%  Similarity=0.960  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             996266631089
Q gi|254780478|r   26 LVSAWSEIVGSN   37 (161)
Q Consensus        26 l~~~W~~IVG~~   37 (161)
                      +.+.|+++||..
T Consensus         1 ~K~sWPELVG~~   12 (64)
T d1to2i_           1 MKTEWPELVGKS   12 (64)
T ss_dssp             -CCBCGGGTTSB
T ss_pred             CCCCCHHHCCCC
T ss_conf             986686465988


No 4  
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}
Probab=10.34  E-value=28  Score=13.48  Aligned_cols=11  Identities=45%  Similarity=1.017  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHH
Q ss_conf             96266631089
Q gi|254780478|r   27 VSAWSEIVGSN   37 (161)
Q Consensus        27 ~~~W~~IVG~~   37 (161)
                      .+.|+++||..
T Consensus         7 K~sWPELVG~~   17 (69)
T d1dwma_           7 KNAWPELVGKS   17 (69)
T ss_dssp             CSBCGGGTTSB
T ss_pred             CCCCHHHCCCC
T ss_conf             77377777978


No 5  
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=9.42  E-value=33  Score=13.04  Aligned_cols=74  Identities=15%  Similarity=0.208  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998999999999862731000257785577844435545566798467999999860399989999999998886332
Q gi|254780478|r   81 MHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGC  158 (161)
Q Consensus        81 ~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg~~vl~~  158 (161)
                      .-+..+|-+.++.|-|-.    ||=+.......++.........+..+...+...++.|+-.++-+-|.+||..-=++
T Consensus       129 k~lA~eLA~~aKnfqGKk----IRsvdeALks~eK~~~n~nkKinakDR~AI~nALksid~~~mAkNL~kfsK~Fk~~  202 (297)
T d1a87a_         129 KNVAKEVANDIKNFHGRN----IRSYNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDMANKIGNLGKAFKVA  202 (297)
T ss_dssp             HHHHHHHHHHHHTCCGGG----CCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHTCCHHHHHHHHHTTCGGGCCT
T ss_pred             HHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf             999999998765404774----47899999999998607041155107999999999648999999999997542751


No 6  
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}
Probab=9.13  E-value=50  Score=11.92  Aligned_cols=67  Identities=19%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHEEE-EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             999998999999999862731000257-785577844435545566798467999999860399989999999998
Q gi|254780478|r   78 LFLMHDQSKIIRNVNIFFGFCAIKRIR-FLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFG  152 (161)
Q Consensus        78 ~el~~~~~~Ii~riN~~~G~~aI~~I~-~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg  152 (161)
                      .++|..-..+++-.+.+-++....+.. ..+|-..   .....+..+++.++..++.+.++.     ++..|..||
T Consensus       222 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~~---g~~R~Pl~~l~~e~~~~l~~~l~~-----i~~~l~e~~  289 (293)
T d1w3ia_         222 LKLQFLHDEVIEASRIFGSLSSNYVLTKYFQGYDL---GYPRPPIFPLDDEEERQLIKKVEG-----IRAKLVELK  289 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCC---BCCCTTSCCCCHHHHHHHHHHHHH-----HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC---CCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHCC
T ss_conf             99999999999999862760799999999659999---996999999999999999999999-----999998768


No 7  
>d1nvmb2 d.81.1.1 (B:132-286) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}
Probab=8.48  E-value=53  Score=11.76  Aligned_cols=40  Identities=10%  Similarity=0.315  Sum_probs=32.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHH-CHHHHHEEEEE
Q ss_conf             79999359069999998999999999862-73100025778
Q gi|254780478|r   67 TLIIACEGSHALFLMHDQSKIIRNVNIFF-GFCAIKRIRFL  106 (161)
Q Consensus        67 ~L~i~v~~~~a~el~~~~~~Ii~riN~~~-G~~aI~~I~~~  106 (161)
                      |++..++.+-.-.+.-.-..+++++.+|. ||+...+..|-
T Consensus        79 Tv~~~~~~~d~~~i~~sv~~mv~~Vq~YVPGYrlk~~~~f~  119 (155)
T d1nvmb2          79 TVYVLSAAADQAAVAASVAEMVQAVQAYVPGYRLKQQVQFD  119 (155)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHHHHTTCTTEEESSCCEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf             79998679999999999999999999878995550242000


No 8  
>d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.80  E-value=57  Score=11.57  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=18.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             999999860399989999999998
Q gi|254780478|r  129 CEKIDKMTEGIKDEQLKRALIRFG  152 (161)
Q Consensus       129 ~~~l~~~l~~I~d~eLr~AL~rLg  152 (161)
                      .+....++..-+|..||.+++++=
T Consensus        12 Le~Y~~~L~~~~D~~lr~~iervI   35 (60)
T d1rsoa_          12 LEEYRSKLSQTEDRQLRSSIERVI   35 (60)
T ss_dssp             HHHHHHTTSSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             999998669944188999999999


No 9  
>g1hym.1 d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [TaxId: 3661]}
Probab=7.69  E-value=28  Score=13.47  Aligned_cols=10  Identities=40%  Similarity=1.016  Sum_probs=7.3

Q ss_pred             HHHHHHHHHH
Q ss_conf             6266631089
Q gi|254780478|r   28 SAWSEIVGSN   37 (161)
Q Consensus        28 ~~W~~IVG~~   37 (161)
                      +.|+++||..
T Consensus         7 ~sWPELVG~~   16 (68)
T g1hym.1           7 SSWPHLVGVG   16 (68)
T ss_dssp             SBCCCCTTSC
T ss_pred             CCCHHHCCCC
T ss_conf             8376776986


No 10 
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=7.59  E-value=58  Score=11.51  Aligned_cols=29  Identities=17%  Similarity=0.151  Sum_probs=0.0

Q ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             6798467999999860399989999999998
Q gi|254780478|r  122 PALEKDDCEKIDKMTEGIKDEQLKRALIRFG  152 (161)
Q Consensus       122 ~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg  152 (161)
                      |.++.++.....+.+..  ||+..+||++.|
T Consensus         3 P~lt~eE~~~a~~~~~~--dp~~~~al~~RG   31 (108)
T d1w2za3           3 PILSVDEQSLAIKLPLK--YPPFIDSVKKRG   31 (108)
T ss_dssp             CCCCHHHHHHHTTGGGG--CHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH--CHHHHHHHHHCC
T ss_conf             83479999999999875--999999999849


Done!