RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780478|ref|YP_003064891.1| hypothetical protein
CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62]
(161 letters)
>gnl|CDD|34951 COG5389, COG5389, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 181
Score = 141 bits (357), Expect = 7e-35
Identities = 67/153 (43%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 5 SQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISSDV 64
+ V + +LDP LR+RAGI+ +L+ +W EI G +A RPE+IIWP R E
Sbjct: 29 ADVANGILDPVLRKRAGINTALLQSWEEIAGDTLADRTRPERIIWPRRGREE----GPFQ 84
Query: 65 SGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPAL 124
G L+IACEG+ ALFL H+ +II VN F GF AI RIR +Q+ + + PS P L
Sbjct: 85 PGVLVIACEGAAALFLQHETGEIIARVNGFLGFGAIGRIRIVQKPVKAPAKRPSTRPPPL 144
Query: 125 EKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVG 157
+ + +++D M EGI+D+ L++AL R G AV+
Sbjct: 145 DAAEEKRLDDMMEGIEDDALRQALERLGRAVLS 177
>gnl|CDD|147452 pfam05258, DUF721, Protein of unknown function (DUF721). This
family contains several actinomycete proteins of unknown
function.
Length = 88
Score = 63.8 bits (156), Expect = 2e-11
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 3 HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISS 62
++ +LL ++A L+ AW EIVG +A RP I
Sbjct: 1 SLGDLLGELLKSRGLKKALALARLLQAWPEIVGPELAGHTRPVNI--------------- 45
Query: 63 DVSGTLIIACE-GSHALFLMHDQSKIIRNVNIFFGFCAIKRIRF 105
GTL++ + + A L + + +++ +N G A++RIRF
Sbjct: 46 -RDGTLVVEVDSAAWATELRYQKPELLERLNERLGEEAVRRIRF 88
>gnl|CDD|146351 pfam03666, NPR3, Nitrogen Permease regulator of amino acid
transport activity 3. This family, also known in yeasts
as Rmd11, complexes with NPR2, pfam06218. This complex
heterodimer is responsible for inactivating TORC1. an
evolutionarily conserved protein complex that controls
cell size via nutritional input signals, specifically,
in response to amino acid starvation.
Length = 424
Score = 29.7 bits (67), Expect = 0.39
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 76 HALFLMHDQSKIIRNVNIF---FGFCAIKRIRFLQRSMSIVNQAPSVSIPALE 125
AL L+ D+ KII+++ K IR ++ + S++ A S +P +
Sbjct: 260 FALLLLDDEKKIIKDLPTADSSPALALAKFIRHIKPTKSLLQLAQSSGLPLSQ 312
>gnl|CDD|29944 cd00951, KDGDH, 5-dehydro-4-deoxyglucarate dehydratase, also called
5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is
member of dihydrodipicolinate synthase (DHDPS) family
that comprises several pyruvate-dependent class I
aldolases. The enzyme is involved in glucarate
metabolism, and its mechanism presumbly involves a
Schiff-base intermediate similar to members of DHDPS
family. While in the case of Pseudomonas sp.
5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to
2,5-dioxopentanoate, in certain species of
Enterobacteriaceae it is degraded instead to pyruvate
and glycerate..
Length = 289
Score = 27.9 bits (62), Expect = 1.2
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 6 QVIDDLLDPFLR---RRAGISMSLVSAWSEIVGSN 37
+++ D P++ RR G ++S+V A + +VG +
Sbjct: 230 RLLRDFFLPYVDIRNRRKGYAVSIVKAGARLVGRD 264
>gnl|CDD|39753 KOG4553, KOG4553, KOG4553, Uncharacterized conserved protein
[Function unknown].
Length = 1398
Score = 26.9 bits (59), Expect = 2.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 1 MIHFSQVIDDLLDPFLRRRAGISMSLVSA 29
+++ S+++D+L D R IS+ L+ A
Sbjct: 479 ILNNSKLVDELFDYVCFMRGDISVRLIRA 507
>gnl|CDD|37820 KOG2609, KOG2609, KOG2609, Cyclin D-interacting protein GCIP [Cell
cycle control, cell division, chromosome partitioning,
RNA processing and modification].
Length = 228
Score = 26.1 bits (57), Expect = 4.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 126 KDDCEKIDKMTEGIKDEQLKR 146
K D E IDK+ + ++ + KR
Sbjct: 158 KPDTEAIDKLVKDLEKQIKKR 178
>gnl|CDD|29465 cd02769, MopB_DMSOR-BSOR-TMAOR, The MopB_DMSOR-BSOR-TMAOR CD
contains dimethylsulfoxide reductase (DMSOR), biotin
sulfoxide reductase (BSOR), trimethylamine N-oxide
reductase (TMAOR) and other related proteins. DMSOR
always catalyzes the reduction of DMSO to
dimethylsulfide, but its cellular location and
oligomerization state are organism-dependent. For
example, in Rhodobacter sphaeriodes and Rhodobacter
capsulatus, it is an 82-kDa monomeric soluble protein
found in the periplasmic space; in E. coli, it is
membrane-bound and exists as a heterotrimer. BSOR
catalyzes the reduction of biotin sulfixode to biotin,
and is unique among Mo enzymes because no additional
auxiliary proteins or cofactors are required. TMAOR is
similar to DMSOR, but its only natural substrate is
TMAO. Members of this CD belong to the
molybdopterin_binding (MopB) superfamily of proteins..
Length = 609
Score = 25.5 bits (56), Expect = 7.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 42 CRPEKIIWPNRTSIERQDISSDVSGTLIIA 71
R I+ P TS+ER DI I+A
Sbjct: 450 ARHADIVLPATTSLERNDIGGSGDNRYIVA 479
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.326 0.139 0.418
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,968,728
Number of extensions: 94132
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 10
Length of query: 161
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,405,363
Effective search space: 330402225
Effective search space used: 330402225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)