RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780478|ref|YP_003064891.1| hypothetical protein
CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62]
         (161 letters)



>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 610

 Score = 24.8 bits (54), Expect = 4.2
 Identities = 5/83 (6%), Positives = 20/83 (24%), Gaps = 1/83 (1%)

Query: 70  IACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDC 129
            A    H   +      I +     +      ++  + +++ +  +   +     +    
Sbjct: 65  TAAHSEHGRHIALAMQHISQGELHDYSIRDEAKLYAIAKTLGVATEGRGLLAIVGDLAAI 124

Query: 130 EKIDKMTEGIKDEQLKRALIRFG 152
              D   +   D+          
Sbjct: 125 TLGDFQNQDY-DKPCAWLAASLT 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,026
Number of extensions: 26568
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 5
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.8 bits)