RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780478|ref|YP_003064891.1| hypothetical protein CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62] (161 letters) >d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase {Rhodospirillum rubrum [TaxId: 1085]} Length = 610 Score = 24.8 bits (54), Expect = 4.2 Identities = 5/83 (6%), Positives = 20/83 (24%), Gaps = 1/83 (1%) Query: 70 IACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDC 129 A H + I + + ++ + +++ + + + + Sbjct: 65 TAAHSEHGRHIALAMQHISQGELHDYSIRDEAKLYAIAKTLGVATEGRGLLAIVGDLAAI 124 Query: 130 EKIDKMTEGIKDEQLKRALIRFG 152 D + D+ Sbjct: 125 TLGDFQNQDY-DKPCAWLAASLT 146 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.326 0.139 0.418 Gapped Lambda K H 0.267 0.0656 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 616,026 Number of extensions: 26568 Number of successful extensions: 62 Number of sequences better than 10.0: 1 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 5 Length of query: 161 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 83 Effective length of database: 1,336,656 Effective search space: 110942448 Effective search space used: 110942448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 49 (22.8 bits)