BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780478|ref|YP_003064891.1| hypothetical protein
CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62]
         (161 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780478|ref|YP_003064891.1| hypothetical protein CLIBASIA_01815 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 161

 Score =  329 bits (844), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MIHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI 60
           MIHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI
Sbjct: 1   MIHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI 60

Query: 61  SSDVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVS 120
           SSDVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVS
Sbjct: 61  SSDVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVS 120

Query: 121 IPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGCSYL 161
           IPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGCSYL
Sbjct: 121 IPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGCSYL 161


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score = 24.6 bits (52), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 119 VSIPALEKDDCEKIDKMTEG-IKDEQLKRALIRFGHA 154
           +S  ALEK+ CE +  +  G  K  ++ R L  FG A
Sbjct: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289


>gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 301

 Score = 21.6 bits (44), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 86  KIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMT 136
           +I R++   +GF  +  +   Q+  +I +    + IPAL    C + D +T
Sbjct: 105 EIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALL---CRQTDLLT 152


>gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 229

 Score = 21.2 bits (43), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 24/74 (32%)

Query: 45  EKIIWPNRTSIERQDI------------SSDVSGTLIIACEGSH-------ALFLMHDQS 85
           EK + P   S  R++             +++ SGTL+I   GSH       ++  ++D S
Sbjct: 86  EKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSS 145

Query: 86  KI-----IRNVNIF 94
            I     +RN  +F
Sbjct: 146 PIAKDFVLRNPGVF 159


>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 468

 Score = 21.2 bits (43), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 135 MTEGIKDEQLKRALIRFG 152
           M  G+K E++KRAL+  G
Sbjct: 293 MQLGLKVEEIKRALLSCG 310


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.139    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,078
Number of Sequences: 1233
Number of extensions: 3776
Number of successful extensions: 17
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 161
length of database: 328,796
effective HSP length: 67
effective length of query: 94
effective length of database: 246,185
effective search space: 23141390
effective search space used: 23141390
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 35 (18.1 bits)