HHsearch alignment for GI: 254780479 and conserved domain: PRK01229
>PRK01229 N-glycosylase/DNA lyase; Provisional.
Probab=96.13 E-value=0.0075 Score=40.59 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=76.5
Q ss_pred HHHHHHHHHH----HHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCC--CHH-HHHHHHHHHHHHH------H
Q ss_conf 4676644673----1161203326589987748997898729989999997404--634-5889998776754------3
Q gi|254780479|r 40 YKVWISEIML----QQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGL--GYY-TRARNLKKCADII------V 106 (356)
Q Consensus 40 y~v~vseiml----qqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gL--Gyy-~Rar~l~~~a~~i------~ 106 (356)
T Consensus 34 e~~iF~EL~FCILTanssA~~~~ka~-~~l~-----~g~~~~~~eel~~~l~~~g~RF~n~rAkyIv~aR~~~~~lk~i~ 107 (208)
T PRK01229 34 EEDLFSELSFCILTANSSAEGGIKAQ-KEIG-----DGFLYLSEEELREKLKEVGHRFPNLRAEYIVEARKLIGKLKEII 107 (208)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH-HHHH-----HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999938874077899999-9987-----40025999999999998496784226899999999988999999
Q ss_pred HCCCCCCCCHHHHHHH-HHHHHHHHHHHHH-HHHCCCEEEECCCCHHHHHHHHHCCCC
Q ss_conf 0057868731456888-8877787766776-643496313124314666576519754
Q gi|254780479|r 107 KKYEGNFPHKVEILKK-LPGIGDYTASAIV-AIAFNHFAVVVDTNIERIISRYFDIIK 162 (356)
Q Consensus 107 ~~~~g~~P~~~~~l~~-LpGiG~yta~ai~-s~a~~~~~~~vD~Nv~RVl~R~~~~~~ 162 (356)
T Consensus 108 ~~~-~~~~e~Re~Lv~nIKG~G~KEASHFLRNiG~-~dlAIlDrHILr~l~~~g~i~~ 163 (208)
T PRK01229 108 KAD-KDQFEAREFLVKNIKGIGYKEASHFLRNVGF-EDLAILDRHILRFLKRYGLIKE 163 (208)
T ss_pred HCC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCC
T ss_conf 706-8778999999985647667999999996585-2357769999999998289765