HHsearch alignment for GI: 254780479 and conserved domain: TIGR03252

>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).

Probab=96.03  E-value=0.033  Score=36.05  Aligned_cols=103  Identities=17%  Similarity=0.312  Sum_probs=70.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHC---CCHH--HHHHHHHHHHHHHHH
Q ss_conf             6787046766446731161203326589987748--99789872998999999740---4634--588999877675430
Q gi|254780479|r   35 SLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKW--PTIFCLSSAKDEEILSAWAG---LGYY--TRARNLKKCADIIVK  107 (356)
Q Consensus        35 ~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~--P~~~~la~a~~~~vl~~w~g---LGyy--~Rar~l~~~a~~i~~  107 (356)
T Consensus        14 L~~~p~AlLiGMLLDQQvPmE~AF~GP~~l~~RlG~lD~~~IA~~Dpd~f~~l~~e~PAiHRfP~SMA~Riq~l~~~iv~   93 (177)
T TIGR03252        14 LSSDPFALLTGMLLDQQVPMERAFAGPHKIARRMGSLDAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYVVD   93 (177)
T ss_pred             HCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf             71392899999998233429998618599998837999899981799999999767961421728899999999999999


Q ss_pred             CCCCC--------CCCH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             05786--------8731---456888887778776677664
Q gi|254780479|r  108 KYEGN--------FPHK---VEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus       108 ~~~g~--------~P~~---~~~l~~LpGiG~yta~ai~s~  137 (356)
T Consensus        94 ~YdGda~~vW~~g~~dg~ell~Rl~~LPGFG~qKA~IFlAL  134 (177)
T TIGR03252        94 TYDGDATAVWTEGDPDGKELLRRLKALPGFGKQKAKIFLAL  134 (177)
T ss_pred             HHCCCHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             80894988740679989999999986799619999999999