HHsearch alignment for GI: 254780479 and conserved domain: cd03426
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=96.48 E-value=0.012 Score=39.28 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCEEEEEECCCC-HHHHCCCCCCCCCCCCC-CCHH------HHHHCCCCCCCCEECCCEEEEEEEEEEEEEEEEEECCCC
Q ss_conf 760577645720-13204744211113467-2158------886301010000213735899831599999999980776
Q gi|254780479|r 249 DNRILLRKRTNT-RLLEGMDELPGSAWSST-KDGN------IDTHSAPFTANWILCNTITHTFTHFTLTLFVWKTIVPQI 320 (356)
Q Consensus 249 ~~kiLL~KRp~~-gll~GLwEFP~~e~~~~-~~~~------~~~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~~~~~~ 320 (356)
T Consensus 15 ~~~ill~kRs~~l~~h~GqisfPGG~~e~~D~~~~~tAlREt~EEiGl~~~~~~~lg~L~~~~t~s~~~V~PfV~~~~~~ 94 (157)
T cd03426 15 ELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFVVTPVVGLVPPP 94 (157)
T ss_pred CEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCC
T ss_conf 67999998267667789848379960276653389999999999868991133898634871325984899999994798
Q ss_pred C-------CCCCCEEECHHHHH
Q ss_conf 7-------66781332278887
Q gi|254780479|r 321 V-------IIPDSTWHDAQNLA 335 (356)
Q Consensus 321 ~-------~~~~~~Wv~~~el~ 335 (356)
T Consensus 95 ~~~~~~~~EV~~vf~vPL~~ll 116 (157)
T cd03426 95 LPLVLNPDEVAEVFEVPLSFLL 116 (157)
T ss_pred CCCCCCHHHHHHHHHCCHHHHH
T ss_conf 7657984897888140599973