HHsearch alignment for GI: 254780479 and conserved domain: cd03675
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=97.06 E-value=0.006 Score=41.25 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=59.7
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCC------CCEECCCEEEEEEEE--EEEEEEE
Q ss_conf 00034137605776457201320474421111346721588863010100------002137358998315--9999999
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTA------NWILCNTITHTFTHF--TLTLFVW 313 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~------~~~~l~~ikH~fTH~--~L~i~v~ 313 (356)
T Consensus 3 Vaavv~~~gr~LLV~~~~~~--~~~~~~PgG~~e~gE~~~~a~~RE~~EEtG~~v~~~~~~g~~~~~~~~~~~~ylr~~F 80 (134)
T cd03675 3 VAAVVERDGRFLLVEEETDG--GLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAF 80 (134)
T ss_pred EEEEEEECCEEEEEEEECCC--CCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCEEEEEEE
T ss_conf 99999979999999996599--9729898227889989999999999997577677617999998755899961899999
Q ss_pred EEECCCC-------CCCCCCEEECHHHHHHCC--CCHH-HHHHHH
Q ss_conf 9980776-------766781332278887479--9878-999998
Q gi|254780479|r 314 KTIVPQI-------VIIPDSTWHDAQNLANAA--LPTV-MKKALS 348 (356)
Q Consensus 314 ~~~~~~~-------~~~~~~~Wv~~~el~~~~--LPs~-~kKIL~ 348 (356)
T Consensus 81 ~~~~~~~~~~~~~D~eI~~a~W~tldEi~~~~~~lRsPlV~~~i~ 125 (134)
T cd03675 81 AAELLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIE 125 (134)
T ss_pred EEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999778998889998602417278999865254116884999999