HHsearch alignment for GI: 254780479 and conserved domain: cd04667
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.41 E-value=2.2e-06 Score=65.54 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=65.3
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEE--EEEEEEEEEEEECCC
Q ss_conf 000341376057764572013204744211113467215888630101000021373589983--159999999998077
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFT--HFTLTLFVWKTIVPQ 319 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fT--H~~L~i~v~~~~~~~ 319 (356)
T Consensus 3 A~vi~~~~g~vLLvrr~-----~g~W~lPGG~ve~GEt~~~Aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~f~~~~~~ 77 (112)
T cd04667 3 ATVICRRGGRVLLVRKS-----GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDGGSTRHHVFVASVPP 77 (112)
T ss_pred EEEEEECCCEEEEEEEC-----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCEEEEEEEEEECC
T ss_conf 89999709999999918-----9938898748889989999999999998693765469999990898899999999758
Q ss_pred ------CCCCCCCEEECHHHHHHCCCCHHHHHHH
Q ss_conf ------6766781332278887479987899999
Q gi|254780479|r 320 ------IVIIPDSTWHDAQNLANAALPTVMKKAL 347 (356)
Q Consensus 320 ------~~~~~~~~Wv~~~el~~~~LPs~~kKIL 347 (356)
T Consensus 78 ~~~~~~~~E~~e~rW~~~del~el~~~~~~R~iv 111 (112)
T cd04667 78 SAQPKPSNEIADCRWLSLDALGDLNASAATRLIV 111 (112)
T ss_pred CCCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHC
T ss_conf 8641899742147998699963688994672101