HHsearch alignment for GI: 254780479 and conserved domain: cd04669

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.70  E-value=0.00016  Score=52.45  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE--ECCCEEEEEEEEE-----EEEEEE
Q ss_conf             200034137605776457201320474421111346721588863010100002--1373589983159-----999999
Q gi|254780479|r  241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI--LCNTITHTFTHFT-----LTLFVW  313 (356)
Q Consensus       241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~--~l~~ikH~fTH~~-----L~i~v~  313 (356)
T Consensus         3 a~~ii~~~~~~vLl~~r~~~~--~~~w~~PGG~ve~gEt~~~a~~RE~~EE~g~~v~~~~~~~~~~~~~~~~~~F~~~i~   80 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKPG--KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQNGRTEHYFLARVI   80 (121)
T ss_pred             EEEEEEECCCEEEEEEECCCC--CCEEECCCCEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCEEEEEEEEEE
T ss_conf             899999779999999984899--986989960605999999999999887609889965599999747980699999998


Q ss_pred             EEECC--CCC----CC-C---CCEEECHHHHHHCCC
Q ss_conf             99807--767----66-7---813322788874799
Q gi|254780479|r  314 KTIVP--QIV----II-P---DSTWHDAQNLANAAL  339 (356)
Q Consensus       314 ~~~~~--~~~----~~-~---~~~Wv~~~el~~~~L  339 (356)
T Consensus        81 ~g~~~~~~~~e~~~~~~~~~~e~~WvpldeL~~l~l  116 (121)
T cd04669          81 SGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPL  116 (121)
T ss_pred             CCEECCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCC
T ss_conf             147815878423577888728999977999272898